Search of human proteins with 134019487

Search of human proteins with 134019487

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|134019487 chromatin modifying protein 1A isoform 1 [Homo
sapiens]
         (240 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134019487 chromatin modifying protein 1A isoform 1 [Homo sapi...   520   e-148
gi|239743123 PREDICTED: hypothetical protein [Homo sapiens]            44   1e-04
gi|57864582 hornerin [Homo sapiens]                                    44   2e-04
gi|169171388 PREDICTED: hypothetical protein [Homo sapiens]            43   2e-04
gi|239749096 PREDICTED: hypothetical protein [Homo sapiens]            43   2e-04
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]      43   3e-04
gi|78190492 retinitis pigmentosa GTPase regulator isoform C [Hom...    41   0.001
gi|7710121 engrailed homeobox 2 [Homo sapiens]                         40   0.002
gi|31324577 molecule interacting with Rab13 [Homo sapiens]             40   0.002
gi|73427806 v-maf musculoaponeurotic fibrosarcoma oncogene homol...    39   0.005
gi|5453736 v-maf musculoaponeurotic fibrosarcoma oncogene homolo...    39   0.005
gi|74136883 heterogeneous nuclear ribonucleoprotein U isoform a ...    38   0.007
gi|169212742 PREDICTED: similar to hCG1654128 [Homo sapiens]           38   0.009
gi|56243590 WD repeat domain 33 isoform 1 [Homo sapiens]               38   0.009
gi|115527070 alpha 2 type VI collagen isoform 2C2a' precursor [H...    37   0.012
gi|115527066 alpha 2 type VI collagen isoform 2C2a precursor [Ho...    37   0.012
gi|115527062 alpha 2 type VI collagen isoform 2C2 precursor [Hom...    37   0.012
gi|89257348 homeo box HB9 [Homo sapiens]                               37   0.012
gi|17402904 homolog of yeast mRNA transport regulator 3 [Homo sa...    37   0.012
gi|154355000 KH-type splicing regulatory protein [Homo sapiens]        37   0.020
gi|32140760 collagen, type XXVII, alpha 1 [Homo sapiens]               37   0.020
gi|21735552 mitogen-activated protein kinase kinase kinase 12 [H...    36   0.026
gi|169213065 PREDICTED: similar to hCG1654128 [Homo sapiens]           36   0.026
gi|113204617 skeletal muscle ryanodine receptor isoform 2 [Homo ...    36   0.026
gi|113204615 skeletal muscle ryanodine receptor isoform 1 [Homo ...    36   0.026
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]      36   0.034
gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens]       36   0.034
gi|150378478 PR domain containing 8 [Homo sapiens]                     36   0.034
gi|150378439 PR domain containing 8 [Homo sapiens]                     36   0.034
gi|169213233 PREDICTED: similar to hCG1654128 [Homo sapiens]           35   0.044

>gi|134019487 chromatin modifying protein 1A isoform 1 [Homo
           sapiens]
          Length = 240

 Score =  520 bits (1338), Expect = e-148
 Identities = 240/240 (100%), Positives = 240/240 (100%)

Query: 1   MDVHGEAAGEAGQEGGEGLQGGAGQSEEGPSAEKCRVCPCVCRERHPQEERRCELASDGV 60
           MDVHGEAAGEAGQEGGEGLQGGAGQSEEGPSAEKCRVCPCVCRERHPQEERRCELASDGV
Sbjct: 1   MDVHGEAAGEAGQEGGEGLQGGAGQSEEGPSAEKCRVCPCVCRERHPQEERRCELASDGV 60

Query: 61  PRRRSGLQGADSCDYEGGDQEYGPGDQSPGQGPEHHGPAEGLLSDGQVRAAGAEPGRPYI 120
           PRRRSGLQGADSCDYEGGDQEYGPGDQSPGQGPEHHGPAEGLLSDGQVRAAGAEPGRPYI
Sbjct: 61  PRRRSGLQGADSCDYEGGDQEYGPGDQSPGQGPEHHGPAEGLLSDGQVRAAGAEPGRPYI 120

Query: 121 GDGGLHELGHHPDHAAGAGGQPHHADRRGEWPGGAGPAQPAARGRLCRGRELCAQPGGPA 180
           GDGGLHELGHHPDHAAGAGGQPHHADRRGEWPGGAGPAQPAARGRLCRGRELCAQPGGPA
Sbjct: 121 GDGGLHELGHHPDHAAGAGGQPHHADRRGEWPGGAGPAQPAARGRLCRGRELCAQPGGPA 180

Query: 181 VTEVGRLEELAVPRRCAPPLPRDVLEGSCPLPTASCLCADPAGLRPAATLRLSPARPAWP 240
           VTEVGRLEELAVPRRCAPPLPRDVLEGSCPLPTASCLCADPAGLRPAATLRLSPARPAWP
Sbjct: 181 VTEVGRLEELAVPRRCAPPLPRDVLEGSCPLPTASCLCADPAGLRPAATLRLSPARPAWP 240


>gi|239743123 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 123

 Score = 43.9 bits (102), Expect = 1e-04
 Identities = 36/115 (31%), Positives = 45/115 (39%), Gaps = 10/115 (8%)

Query: 4   HGEAAGEAGQEGGEGLQGGAGQSEEGPSAEKCRVCPCVCRERHPQ-EERRCELASDGVPR 62
           H    G  G  G EG  GGAG++ E   AE  R C    R RHPQ E    E   DG   
Sbjct: 18  HKGGGGGGGAGGAEGGAGGAGRARE--RAESGRPCG---RRRHPQAEPAPKEFQGDGAAA 72

Query: 63  RRSGLQGADSCDYEGGDQEYGPGDQSPGQGPEHHGPAEGLLSDGQVRAAGAEPGR 117
           R   L    S +   G +    G++S  +      P  G       R++  EP R
Sbjct: 73  RADALTAGKSAEPAPGGEGGERGEESASERESERAPGRG----PGARSSAGEPER 123


>gi|57864582 hornerin [Homo sapiens]
          Length = 2850

 Score = 43.5 bits (101), Expect = 2e-04
 Identities = 47/175 (26%), Positives = 63/175 (36%), Gaps = 31/175 (17%)

Query: 4   HGEAAGEAGQEGGEGLQG-GAGQSEEGPSAEKCRVCPCVCRERHPQEERRCELASDGVPR 62
           +G+    + Q  G G QG G+G S   PS           R RH          S    +
Sbjct: 752 YGQHGSGSHQSSGHGRQGSGSGHS---PS-----------RVRHGSSSGH----SSSHGQ 793

Query: 63  RRSGLQGADSCD-YEGGDQE---YGPGDQSPGQGPEHHGPAEGLLSD----GQVRAAGAE 114
             SG   + SC  YE G  +   +G  +   GQG   HG A G  S     G      + 
Sbjct: 794 HGSGTSCSSSCGHYESGSGQASGFGQHESGSGQGYSQHGSASGHFSSQGRHGSTSGQSSS 853

Query: 115 PGRPYIGDGGLHELGHHPDHAAGAGGQPHHADRRGEWPG----GAGPAQPAARGR 165
            G+     G     G H   +  A G+  H    G+ PG    G+G  Q  + GR
Sbjct: 854 SGQHDSSSGQSSSYGQHESASHHASGRGRHGSGSGQSPGHGQRGSGSGQSPSYGR 908



 Score = 27.7 bits (60), Expect = 9.2
 Identities = 31/139 (22%), Positives = 44/139 (31%), Gaps = 6/139 (4%)

Query: 4    HGEAAGEAGQEGGEGLQGGAGQSEEGPSAEKCRVCPCVCRERHPQEERRCELASDGVPRR 63
            HG  +G +   G  G   G+G+S      E       V  +           +  G    
Sbjct: 2188 HGSGSGHSSSHGQHG--SGSGRSSSRGPYESRSGHSSVFGQHESGSGHSSAYSQHGSGSG 2245

Query: 64   R---SGLQGADSCDYEGGDQEYGPGDQSPGQGPEHHGPAEGLLSDGQVRAAGAEPGRPYI 120
                 G  G+ S      DQE     QS   G    G ++      Q   +G  P R   
Sbjct: 2246 HFCSQGQHGSTSGQSSTFDQEGSSTGQSSSHGQHGSGSSQSSSYGQQGSGSGQSPSRGRH 2305

Query: 121  GDGGLHELGHHPDHAAGAG 139
            G G  H    +  H +G+G
Sbjct: 2306 GSGSGHS-SSYGQHGSGSG 2323


>gi|169171388 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 154

 Score = 43.1 bits (100), Expect = 2e-04
 Identities = 37/117 (31%), Positives = 47/117 (40%), Gaps = 11/117 (9%)

Query: 2   DVHGEAAGEAGQEGGEGLQGGAGQSEEGPSAEKCRVCPCVCRERHPQEERRC-ELASDGV 60
           D+ G   G  G  G EG  GGAG++ E   AE  R C    R RHPQ E    E   DG 
Sbjct: 48  DIKGGGGG-GGAGGAEGGAGGAGRARE--RAESGRPCG---RRRHPQAEPAPKEFQGDGA 101

Query: 61  PRRRSGLQGADSCDYEGGDQEYGPGDQSPGQGPEHHGPAEGLLSDGQVRAAGAEPGR 117
             R   L    S +   G +    G++S  +      P  G       R++  EP R
Sbjct: 102 AARADALTAGKSAEPAPGGEGGERGEESASERESERAPGRG----PGARSSAGEPER 154


>gi|239749096 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 154

 Score = 43.1 bits (100), Expect = 2e-04
 Identities = 37/117 (31%), Positives = 47/117 (40%), Gaps = 11/117 (9%)

Query: 2   DVHGEAAGEAGQEGGEGLQGGAGQSEEGPSAEKCRVCPCVCRERHPQEERRC-ELASDGV 60
           D+ G   G  G  G EG  GGAG++ E   AE  R C    R RHPQ E    E   DG 
Sbjct: 48  DIKGGGGG-GGAGGAEGGAGGAGRARE--RAESGRPCG---RRRHPQAEPAPKEFQGDGA 101

Query: 61  PRRRSGLQGADSCDYEGGDQEYGPGDQSPGQGPEHHGPAEGLLSDGQVRAAGAEPGR 117
             R   L    S +   G +    G++S  +      P  G       R++  EP R
Sbjct: 102 AARADALTAGKSAEPAPGGEGGERGEESASERESERAPGRG----PGARSSAGEPER 154


>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
          Length = 1466

 Score = 42.7 bits (99), Expect = 3e-04
 Identities = 53/171 (30%), Positives = 67/171 (39%), Gaps = 35/171 (20%)

Query: 9   GEAGQEGGEGLQGGAGQSEEGPSAEKCRVCPCVCRERHPQEERRCELASDGVPRRRSGLQ 68
           G AG  G  GL+GGAG  E G +  K         E  P+ ER  E    GVP    G +
Sbjct: 417 GPAGANGAPGLRGGAG--EPGKNGAK--------GEPGPRGERG-EAGIPGVP----GAK 461

Query: 69  GADSCDYEGGD-----------QEYGPGDQSPGQG---PEHHGPA--EGLLSDGQVRAAG 112
           G D  D   G+           +   PG + P      P   GPA   G       R A 
Sbjct: 462 GEDGKDGSPGEPGANGLPGAAGERGAPGFRGPAGPNGIPGEKGPAGERGAPGPAGPRGAA 521

Query: 113 AEPGRPYI-GDGGLHELGHHPDHAAGAGGQPHHADRRGE--WPGGAGPAQP 160
            EPGR  + G  G+  +   P    G+ G+P     +GE   PG  GP+ P
Sbjct: 522 GEPGRDGVPGGPGMRGMPGSPG-GPGSDGKPGPPGSQGESGRPGPPGPSGP 571



 Score = 34.7 bits (78), Expect = 0.076
 Identities = 53/187 (28%), Positives = 65/187 (34%), Gaps = 32/187 (17%)

Query: 9   GEAGQEGGEGLQGGAGQ-SEEGPSAEKCRVCPCVCRERHPQEERRCELASDGVPRRRS-- 65
           G  G+ G  G QG +G+    GPS  + +  P V     P+        +DG P +    
Sbjct: 546 GSDGKPGPPGSQGESGRPGPPGPSGPRGQ--PGVMGFPGPK-------GNDGAPGKNGER 596

Query: 66  ------GLQGADSCDYEGGDQ----EYGPGDQSPGQGPEHHGPAEGLLSDGQVRAAGAEP 115
                 G QG    + E G Q      GPG      GP      +GL   G       +P
Sbjct: 597 GGPGGPGPQGPPGKNGETGPQGPPGPTGPGGDKGDTGPPGPQGLQGLPGTGGPPGENGKP 656

Query: 116 GRP-YIGDGGLHEL--GHHPDHAAGAGGQPHHADRRGEWPGGAGPAQPAARGRLCRGREL 172
           G P   GD G      G     A G  G P  A   G   GGAGP  P        G+  
Sbjct: 657 GEPGPKGDAGAPGAPGGKGDAGAPGERGPPGLAGAPG-LRGGAGPPGPEG------GKGA 709

Query: 173 CAQPGGP 179
              PG P
Sbjct: 710 AGPPGPP 716



 Score = 30.4 bits (67), Expect = 1.4
 Identities = 44/150 (29%), Positives = 53/150 (35%), Gaps = 48/150 (32%)

Query: 8    AGEAGQEGGEGLQGGAGQSEEGPSAEKCRVCPCVCRERHPQEERRCELASDGVPRRRSGL 67
            +GE G  G +GL G AG + E              R+ +P         SDG+P      
Sbjct: 989  SGERGPPGPQGLPGLAGTAGEPG------------RDGNP--------GSDGLP------ 1022

Query: 68   QGADSCDYEGGDQEYGPGDQSPGQGPEHHGPAEGLLSDGQVRAAGAEPGRPYIGDGGLHE 127
             G D      GD+       +PG  P H GP       G V  AG    R   G+ G   
Sbjct: 1023 -GRDGSPGGKGDRGENGSPGAPG-APGHPGP------PGPVGPAGKSGDR---GESG--- 1068

Query: 128  LGHHPDHAAGAGGQPHHADRRGEWPGGAGP 157
                    AG  G P  A  RG  PG  GP
Sbjct: 1069 -------PAGPAGAPGPAGSRGA-PGPQGP 1090



 Score = 29.6 bits (65), Expect = 2.4
 Identities = 48/181 (26%), Positives = 58/181 (32%), Gaps = 26/181 (14%)

Query: 9   GEAGQEGGEGLQGGAGQSEEGPSAEKCRVCPCVCRERHPQEERRCELAS--------DGV 60
           GE G  G  G  G  GQ+ E P  +  R  P    E  P         S         GV
Sbjct: 801 GETGPPGPAGFPGAPGQNGE-PGGKGERGAPGEKGEGGPPGVAGPPGGSGPAGPPGPQGV 859

Query: 61  PRRRSGLQGADSCDYEGGDQEYGPGDQSPGQGPEHHGPAEGLLSDGQVRAAG--AEPGRP 118
              R    G  +  + G     GP   +   GP   GP+     DG    AG    PG P
Sbjct: 860 KGERGSPGGPGAAGFPGARGLPGPPGSNGNPGPP--GPSGSPGKDGPPGPAGNTGAPGSP 917

Query: 119 YIGDGGLHELGHHPDHAAGAGGQPHHADRRGEWPGGAGPAQPAARGRLCRGRELCAQPGG 178
            +           P   AG  G+      +G  PG  GP   A    +   R L   PG 
Sbjct: 918 GVSG---------PKGDAGQPGEKGSPGAQGP-PGAPGPLGIAG---ITGARGLAGPPGM 964

Query: 179 P 179
           P
Sbjct: 965 P 965


>gi|78190492 retinitis pigmentosa GTPase regulator isoform C [Homo
            sapiens]
          Length = 1152

 Score = 40.8 bits (94), Expect = 0.001
 Identities = 41/162 (25%), Positives = 58/162 (35%), Gaps = 22/162 (13%)

Query: 5    GEAAGEAGQEGGEGLQGGAGQSEEGPSAEKCRVCPCVCRERHPQEERRCELASDGVPRRR 64
            GE  GE  +  GEG + G G+ EE     K         E    E    E   +G     
Sbjct: 891  GEGEGEEEEGEGEGEEEGEGEGEEEEGEGKGE------EEGEEGEGEGEEEEGEGEGEDG 944

Query: 65   SGLQGADSCDYEGGDQE---------YGPGDQSPGQGPEHHGPAEGL----LSDGQVRAA 111
             G    +  ++EG ++E          G G++  G+G E  G  EG       +G+    
Sbjct: 945  EGEGEEEEGEWEGEEEEGEGEGEEEGEGEGEEGEGEGEEEEGEGEGEEEEGEEEGEEEGE 1004

Query: 112  GAEPGRPYIGDGGLHELGHHPDHAAGAGGQPHHADRRGEWPG 153
            G E G    G+G   E G       G  G+    +  GE  G
Sbjct: 1005 GEEEGE---GEGEEEEEGEVEGEVEGEEGEGEGEEEEGEEEG 1043



 Score = 38.1 bits (87), Expect = 0.007
 Identities = 47/185 (25%), Positives = 65/185 (35%), Gaps = 42/185 (22%)

Query: 5   GEAAGEAGQ-EGGEGLQG----------GAGQSEEGPSAEKCRVCPCVCRERHPQEERRC 53
           GE   E G+ EGGE  +G          G G+ EEG   E          E    EE   
Sbjct: 805 GEEKEEGGEVEGGEVEEGKGEREEEEEEGEGEEEEGEGEE----------EEGEGEEEEG 854

Query: 54  ELASDGVPRRRSGLQGADSCDYEGGDQE---------YGPGDQSPGQGP-EHHGPAEGLL 103
           E   +       G +  +  + EG ++E          G G++  G+G  E  G  EG  
Sbjct: 855 EGKGEEEGEEGEGEEEGEEGEGEGEEEEGEGEGEEEGEGEGEEEEGEGEGEEEGEGEGEE 914

Query: 104 SDGQVRAAGAEPGRPYIGDGGLHELGHHPDHAAGAGGQPHHADRRGEWPG----GAGPAQ 159
            +G+    G E G    G+G   E         G  G+    +  GEW G    G G  +
Sbjct: 915 EEGE--GKGEEEGEEGEGEGEEEE-----GEGEGEDGEGEGEEEEGEWEGEEEEGEGEGE 967

Query: 160 PAARG 164
               G
Sbjct: 968 EEGEG 972



 Score = 35.4 bits (80), Expect = 0.044
 Identities = 39/164 (23%), Positives = 57/164 (34%), Gaps = 12/164 (7%)

Query: 5   GEAAGEAGQEGGEGLQGGAGQSEEGPSAEKCRVCPCVCRERHPQEERRCELASDGVPRRR 64
           GE  G+ G+   E  +G   + EEG   E   V          +EE   E   +G     
Sbjct: 787 GEEEGDQGEGEEEETEGRGEEKEEGGEVEGGEVEEGKGEREEEEEEGEGE-EEEGEGEEE 845

Query: 65  SGLQGADSCDYEGGDQEYGPGDQSPGQGPEHHGPAEGLLSDGQVRAAGAEPGRPYIGDG- 123
            G +G +  + EG  +E G   +   +G E  G  E    +G+    G   G    G+G 
Sbjct: 846 EG-EGEEE-EGEGKGEEEGEEGEGEEEGEEGEGEGEEEEGEGEGEEEGEGEGEEEEGEGE 903

Query: 124 --------GLHELGHHPDHAAGAGGQPHHADRRGEWPGGAGPAQ 159
                   G  E G       G  G+    +  GE  G  G  +
Sbjct: 904 GEEEGEGEGEEEEGEGKGEEEGEEGEGEGEEEEGEGEGEDGEGE 947



 Score = 30.4 bits (67), Expect = 1.4
 Identities = 30/113 (26%), Positives = 43/113 (38%), Gaps = 25/113 (22%)

Query: 2    DVHGEAAGEAGQ-EG------GEGLQGGAGQSEEGPSAEKCRVCPCVCRERHPQEERRCE 54
            D  GE   E G+ EG      GEG + G G+ EEG              E   +E     
Sbjct: 943  DGEGEGEEEEGEWEGEEEEGEGEGEEEGEGEGEEGEG------------EGEEEEGEGEG 990

Query: 55   LASDGVPRRRSGLQGADSCDYEGGDQEYG------PGDQSPGQGPEHHGPAEG 101
               +G        +G +  + EG ++E G       G++  G+G E  G  EG
Sbjct: 991  EEEEGEEEGEEEGEGEEEGEGEGEEEEEGEVEGEVEGEEGEGEGEEEEGEEEG 1043


>gi|7710121 engrailed homeobox 2 [Homo sapiens]
          Length = 333

 Score = 39.7 bits (91), Expect = 0.002
 Identities = 45/173 (26%), Positives = 57/173 (32%), Gaps = 13/173 (7%)

Query: 3   VHGEAAGEAGQEGGEGLQGGAGQSEEGPSAEKCRVCPCVCRE--RHPQEERRCELASDGV 60
           V G+   E+   GG G  GG+   E      +  + P V +    H    R      D +
Sbjct: 15  VEGQRQPESSPGGGSGGGGGSSPGEADTGRRRALMLPAVLQAPGNHQHPHRITNFFIDNI 74

Query: 61  PRRRSGLQ--GADSCDYEGGDQEYGPGDQSPGQGPEHHGPAEG---LLSDGQVRAAGAEP 115
            R   G +      C   GG +  G G +    G E  G A G   LL  G        P
Sbjct: 75  LRPEFGRRKDAGTCCAGAGGGRGGGAGGEGGASGAEGGGGAGGSEQLLGSGSREPRQNPP 134

Query: 116 GRPYIGDGGLHELGHHPDHAAGAGGQP----HHADRRGEWPGGAGPAQPAARG 164
             P  G GG            G GG      H   ++G  PGG       ARG
Sbjct: 135 CAP--GAGGPLPAAGSDSPGDGEGGSKTLSLHGGAKKGGDPGGPLDGSLKARG 185



 Score = 31.2 bits (69), Expect = 0.84
 Identities = 44/141 (31%), Positives = 55/141 (39%), Gaps = 31/141 (21%)

Query: 5   GEAAGEAGQEGGEGLQGGAGQSEEGPSAEKCRVCPCVCRERHPQEERRCELASDG-VPRR 63
           G A GE G  G EG  GGAG SE+   +            R P++   C   + G +P  
Sbjct: 98  GGAGGEGGASGAEG-GGGAGGSEQLLGS----------GSREPRQNPPCAPGAGGPLP-- 144

Query: 64  RSGLQGADSCDYEGGDQEYGPGDQSPGQGPEHHGPAEGLLSDGQVRAAGAEPGRPYIGDG 123
                G+DS     GD E G    S   G +  G   G L DG ++A G       +G G
Sbjct: 145 ---AAGSDS----PGDGEGGSKTLSLHGGAKKGGDPGGPL-DGSLKARG-------LGGG 189

Query: 124 GLHELGHHPDHAAGA--GGQP 142
            L          AGA  G QP
Sbjct: 190 DLSVSSDSDSSQAGANLGAQP 210


>gi|31324577 molecule interacting with Rab13 [Homo sapiens]
          Length = 863

 Score = 39.7 bits (91), Expect = 0.002
 Identities = 50/181 (27%), Positives = 65/181 (35%), Gaps = 22/181 (12%)

Query: 24  GQSEEGPSAEKCRVCPCVCRERHPQEERRCELASDGVPRRRSGLQGA-DSCDYEGGDQEY 82
           G  E GP  E   VC   C    P             P+++   Q A D+ D  GG    
Sbjct: 201 GAYENGPE-EGTFVCAEHCARLGPGTRSGTRPGPFSQPKQQHQQQLAEDAKDVPGG---- 255

Query: 83  GPGDQSPGQGPEHHGPAEGLLSDGQVRAAGAEPGRPYIGDGGLHELGHHPDHAAGAGGQP 142
           GP   +P  G E  GP     +  Q+      PG+       L EL   P       G+P
Sbjct: 256 GPSSSAPA-GAEADGPKASPEARPQIPTKPRVPGK-------LQELASPP------AGRP 301

Query: 143 HHADRRGEWPGGAGPAQPAARGRLCRGRELCAQPGGPAVTEVGRLEELAVPRRCAPPLPR 202
             A R+        PA P  R R    +E   +  G +    GRL EL VP+    P P 
Sbjct: 302 TPAPRKAS--ESTTPAPPTPRPRSSLQQENLVEQAGSSSLVNGRLHELPVPKPRGTPKPS 359

Query: 203 D 203
           +
Sbjct: 360 E 360


>gi|73427806 v-maf musculoaponeurotic fibrosarcoma oncogene homolog
           isoform b [Homo sapiens]
          Length = 373

 Score = 38.5 bits (88), Expect = 0.005
 Identities = 28/82 (34%), Positives = 32/82 (39%), Gaps = 1/82 (1%)

Query: 83  GPGDQSPGQGPEHHGPAEGLLSDGQVRAAGAEPGRPYIGDGGLHELGHHPDHAAGAGGQP 142
           G G    G G E  GPA  ++S     AA      P+      H  GHH    AGA G  
Sbjct: 145 GAGASLGGSG-EEMGPAAAVVSAVIAAAAAQSGAGPHYHHHHHHAAGHHHHPTAGAPGAA 203

Query: 143 HHADRRGEWPGGAGPAQPAARG 164
             A       GGAG   PA+ G
Sbjct: 204 GSAAASAGGAGGAGGGGPASAG 225


>gi|5453736 v-maf musculoaponeurotic fibrosarcoma oncogene homolog
           isoform a [Homo sapiens]
          Length = 403

 Score = 38.5 bits (88), Expect = 0.005
 Identities = 28/82 (34%), Positives = 32/82 (39%), Gaps = 1/82 (1%)

Query: 83  GPGDQSPGQGPEHHGPAEGLLSDGQVRAAGAEPGRPYIGDGGLHELGHHPDHAAGAGGQP 142
           G G    G G E  GPA  ++S     AA      P+      H  GHH    AGA G  
Sbjct: 145 GAGASLGGSG-EEMGPAAAVVSAVIAAAAAQSGAGPHYHHHHHHAAGHHHHPTAGAPGAA 203

Query: 143 HHADRRGEWPGGAGPAQPAARG 164
             A       GGAG   PA+ G
Sbjct: 204 GSAAASAGGAGGAGGGGPASAG 225


>gi|74136883 heterogeneous nuclear ribonucleoprotein U isoform a
           [Homo sapiens]
          Length = 825

 Score = 38.1 bits (87), Expect = 0.007
 Identities = 43/172 (25%), Positives = 62/172 (36%), Gaps = 11/172 (6%)

Query: 1   MDVHGEAAGEAGQEGGEGLQGGAGQSEEGPSAEKCRVCPCVCRERHPQEERRCELASDGV 60
           +D+ G++AG +G    +    G  + EE    E+  +      +    EE     A+D  
Sbjct: 60  LDLGGDSAGRSGAGLEQEAAAGGDEEEEEEEEEEEGISALDGDQMELGEENGAAGAADSG 119

Query: 61  PRRRSGL---------QGADSCDYEGGDQEYGPGDQSPGQGPEHHGPAEGLLSDGQVRAA 111
           P               QG    + E GD+E G GD++     +   PA       Q R A
Sbjct: 120 PMEEEEAASEDENGDDQGFQEGEDELGDEEEGAGDENGHGEQQPQPPATQQQQPQQQRGA 179

Query: 112 GAEPGRPYIGDGGLHELGHHPDHAAGAGGQPHHADRRGEWPGGAG-PAQPAA 162
             E      G   L  +   P   A  G Q     ++ E  GG G P  PAA
Sbjct: 180 AKEAAGKSSGPTSLFAVTVAPP-GARQGQQQAGGKKKAEGGGGGGRPGAPAA 230


>gi|169212742 PREDICTED: similar to hCG1654128 [Homo sapiens]
          Length = 1015

 Score = 37.7 bits (86), Expect = 0.009
 Identities = 39/161 (24%), Positives = 55/161 (34%), Gaps = 30/161 (18%)

Query: 4   HGEAAGEAGQEGGEGLQGGAGQSEEGPSAEKCRVCPCVCRERHPQEERRCELASDGVPRR 63
           HG    E G E     +   GQ E+GP             +  P E         GV ++
Sbjct: 227 HGVGQEEDGPEDASPTEHDVGQEEDGP------------EDASPTEH--------GVDQQ 266

Query: 64  RSGLQGADSCDYEGGDQEYGPGDQSP---GQGPEHHGPAEGLLSDGQV--RAAGAEPGRP 118
             G + A   ++    QE GP D  P   G   E  GP +  L++  V  +  G E   P
Sbjct: 267 EDGPEDASPTEHGVDQQEDGPEDARPTEHGVDQEEDGPEDASLTEHGVDQQEDGPEDASP 326

Query: 119 YIGDGGLHELGHHPDHAAGAGGQPHHADRRGEWPGGAGPAQ 159
                  H +    D    A    H  D+  + P  A P +
Sbjct: 327 -----TEHGIDQEEDGPEDASPTEHGVDQEEDGPEDASPTE 362


>gi|56243590 WD repeat domain 33 isoform 1 [Homo sapiens]
          Length = 1336

 Score = 37.7 bits (86), Expect = 0.009
 Identities = 44/172 (25%), Positives = 60/172 (34%), Gaps = 35/172 (20%)

Query: 14   EGGEGLQGGAGQSEEGPSAEKCRVCPCVCRERHP--------QEERRCELASDGV----P 61
            EGG       G  E GP  E  R  P   R  HP          ER   L    +    P
Sbjct: 1174 EGGRKPDSWDGNREPGPGHEHFRDTP---RPDHPPHDGHSPASRERSSSLQGMDMASLPP 1230

Query: 62   RRRSGLQGADSCDYEGGDQEYGPGDQSPGQGPEHHGPAEGLLSDGQVRAAGAEPGRPYIG 121
            R+R    G  + ++   +   GP +   G+G    GPA+ +   G+  +   E       
Sbjct: 1231 RKRPWHDGPGTSEHREMEAPGGPSEDRGGKGRGGPGPAQRVPKSGRSSSLDGE------- 1283

Query: 122  DGGLHELGHHPDHAAG---AGGQPHHADRRG-EWPGGAG-----PAQPAARG 164
                H  G+H D   G     G P    R G  W  G+      P + A+RG
Sbjct: 1284 ----HHDGYHRDEPFGGPPGSGTPSRGGRSGSNWGRGSNMNSGPPRRGASRG 1331



 Score = 29.6 bits (65), Expect = 2.4
 Identities = 39/160 (24%), Positives = 55/160 (34%), Gaps = 21/160 (13%)

Query: 5    GEAAGEAGQEGGEGLQGGAG-QSEEGPSAEKCRVCPCVCRERHPQEERRCELASDGVPRR 63
            G   G  G     G+QG  G Q ++ P+       P   +   P ++++  L  DG PR 
Sbjct: 863  GPPQGSLGPPPQGGMQGPPGPQGQQNPARG-----PHPSQGPIPFQQQKTPLLGDG-PRA 916

Query: 64   RSGLQGADSCDYEGGDQEYGPGDQSPGQGPEHHGPAEGLLSDGQVRAAGAEPGRPYIGDG 123
                +G          Q  GP    PG G +        L+ GQ    G  P +      
Sbjct: 917  PFNQEG----------QSTGPPPLIPGLGQQGAQGRIPPLNPGQ----GPGPNKGDSRGP 962

Query: 124  GLHELGHHPDHAAGAGGQPHHADRRGEWPGGAGPAQPAAR 163
              H +G   +      G P H   RG + GG     P  R
Sbjct: 963  PNHHMGPMSERRHEQSGGPEHGPERGPFRGGQDCRGPPDR 1002


>gi|115527070 alpha 2 type VI collagen isoform 2C2a' precursor [Homo
           sapiens]
          Length = 828

 Score = 37.4 bits (85), Expect = 0.012
 Identities = 53/183 (28%), Positives = 67/183 (36%), Gaps = 20/183 (10%)

Query: 9   GEAGQEGGEGLQGGAGQSEEGPSAEKCRVCPCVCRERHPQEERRCELASDGVPRRRSGLQ 68
           GE G+ G  G +G  G   +GP  EK    P   R    +   +      G+P  R G Q
Sbjct: 421 GEPGRRGDPGTKGSPGS--DGPKGEKGDPGPEGPRGLAGEVGNKGAKGDRGLPGPR-GPQ 477

Query: 69  GA----DSCDYEGGDQEYGPGDQSPGQGPEHHGPAEGLLSDGQVRAAG--AEPGRPYIGD 122
           GA          G   + GP   S   GP+      G    G   A G   EPG P   +
Sbjct: 478 GALGEPGKQGSRGDPGDAGPRGDSGQPGPKGDPGRPGFSYPGPRGAPGEKGEPG-PRGPE 536

Query: 123 GGLHELGHHPDHAAGAGGQPHHADRRGEWPGGAGPAQPAARG-RLCRGRE-LCAQPGGPA 180
           GG  + G          G+P     +GE      P +P  RG R   G E     PG P 
Sbjct: 537 GGRGDFG--------LKGEPGRKGEKGEPADPGPPGEPGPRGPRGVPGPEGEPGPPGDPG 588

Query: 181 VTE 183
           +TE
Sbjct: 589 LTE 591



 Score = 31.6 bits (70), Expect = 0.64
 Identities = 52/175 (29%), Positives = 63/175 (36%), Gaps = 43/175 (24%)

Query: 9   GEAGQEGGEGLQGGAGQ----SEEGPSAEKCRVCPCVCRERHPQEERRCELASDGV---- 60
           GEAG  G  G QGG G        GP  E         +     +       S GV    
Sbjct: 358 GEAGSPGERGDQGGKGDPGRPGRRGPPGE------IGAKGSKGYQGNSGAPGSPGVKGAK 411

Query: 61  -------PRRRSGLQGADSCDYEGGDQEYGPGDQSPGQGPEHHGPAEGLLSDGQVRAAGA 113
                  P+   G +G      +G     GP  +    GPE  GP  GL   G+V   GA
Sbjct: 412 GGPGPRGPKGEPGRRGDPGT--KGSPGSDGPKGEKGDPGPE--GP-RGLA--GEVGNKGA 464

Query: 114 EPGRPYIGDGGLHELGHHPDHAAGAGGQPHHADRRGEWPGGAGP----AQPAARG 164
           +      GD GL      P    GA G+P     RG+ PG AGP     QP  +G
Sbjct: 465 K------GDRGL----PGPRGPQGALGEPGKQGSRGD-PGDAGPRGDSGQPGPKG 508


>gi|115527066 alpha 2 type VI collagen isoform 2C2a precursor [Homo
           sapiens]
          Length = 918

 Score = 37.4 bits (85), Expect = 0.012
 Identities = 53/183 (28%), Positives = 67/183 (36%), Gaps = 20/183 (10%)

Query: 9   GEAGQEGGEGLQGGAGQSEEGPSAEKCRVCPCVCRERHPQEERRCELASDGVPRRRSGLQ 68
           GE G+ G  G +G  G   +GP  EK    P   R    +   +      G+P  R G Q
Sbjct: 421 GEPGRRGDPGTKGSPGS--DGPKGEKGDPGPEGPRGLAGEVGNKGAKGDRGLPGPR-GPQ 477

Query: 69  GA----DSCDYEGGDQEYGPGDQSPGQGPEHHGPAEGLLSDGQVRAAG--AEPGRPYIGD 122
           GA          G   + GP   S   GP+      G    G   A G   EPG P   +
Sbjct: 478 GALGEPGKQGSRGDPGDAGPRGDSGQPGPKGDPGRPGFSYPGPRGAPGEKGEPG-PRGPE 536

Query: 123 GGLHELGHHPDHAAGAGGQPHHADRRGEWPGGAGPAQPAARG-RLCRGRE-LCAQPGGPA 180
           GG  + G          G+P     +GE      P +P  RG R   G E     PG P 
Sbjct: 537 GGRGDFG--------LKGEPGRKGEKGEPADPGPPGEPGPRGPRGVPGPEGEPGPPGDPG 588

Query: 181 VTE 183
           +TE
Sbjct: 589 LTE 591



 Score = 31.6 bits (70), Expect = 0.64
 Identities = 52/175 (29%), Positives = 63/175 (36%), Gaps = 43/175 (24%)

Query: 9   GEAGQEGGEGLQGGAGQ----SEEGPSAEKCRVCPCVCRERHPQEERRCELASDGV---- 60
           GEAG  G  G QGG G        GP  E         +     +       S GV    
Sbjct: 358 GEAGSPGERGDQGGKGDPGRPGRRGPPGE------IGAKGSKGYQGNSGAPGSPGVKGAK 411

Query: 61  -------PRRRSGLQGADSCDYEGGDQEYGPGDQSPGQGPEHHGPAEGLLSDGQVRAAGA 113
                  P+   G +G      +G     GP  +    GPE  GP  GL   G+V   GA
Sbjct: 412 GGPGPRGPKGEPGRRGDPGT--KGSPGSDGPKGEKGDPGPE--GP-RGLA--GEVGNKGA 464

Query: 114 EPGRPYIGDGGLHELGHHPDHAAGAGGQPHHADRRGEWPGGAGP----AQPAARG 164
           +      GD GL      P    GA G+P     RG+ PG AGP     QP  +G
Sbjct: 465 K------GDRGL----PGPRGPQGALGEPGKQGSRGD-PGDAGPRGDSGQPGPKG 508


>gi|115527062 alpha 2 type VI collagen isoform 2C2 precursor [Homo
           sapiens]
          Length = 1019

 Score = 37.4 bits (85), Expect = 0.012
 Identities = 53/183 (28%), Positives = 67/183 (36%), Gaps = 20/183 (10%)

Query: 9   GEAGQEGGEGLQGGAGQSEEGPSAEKCRVCPCVCRERHPQEERRCELASDGVPRRRSGLQ 68
           GE G+ G  G +G  G   +GP  EK    P   R    +   +      G+P  R G Q
Sbjct: 421 GEPGRRGDPGTKGSPGS--DGPKGEKGDPGPEGPRGLAGEVGNKGAKGDRGLPGPR-GPQ 477

Query: 69  GA----DSCDYEGGDQEYGPGDQSPGQGPEHHGPAEGLLSDGQVRAAG--AEPGRPYIGD 122
           GA          G   + GP   S   GP+      G    G   A G   EPG P   +
Sbjct: 478 GALGEPGKQGSRGDPGDAGPRGDSGQPGPKGDPGRPGFSYPGPRGAPGEKGEPG-PRGPE 536

Query: 123 GGLHELGHHPDHAAGAGGQPHHADRRGEWPGGAGPAQPAARG-RLCRGRE-LCAQPGGPA 180
           GG  + G          G+P     +GE      P +P  RG R   G E     PG P 
Sbjct: 537 GGRGDFG--------LKGEPGRKGEKGEPADPGPPGEPGPRGPRGVPGPEGEPGPPGDPG 588

Query: 181 VTE 183
           +TE
Sbjct: 589 LTE 591



 Score = 31.6 bits (70), Expect = 0.64
 Identities = 52/175 (29%), Positives = 63/175 (36%), Gaps = 43/175 (24%)

Query: 9   GEAGQEGGEGLQGGAGQ----SEEGPSAEKCRVCPCVCRERHPQEERRCELASDGV---- 60
           GEAG  G  G QGG G        GP  E         +     +       S GV    
Sbjct: 358 GEAGSPGERGDQGGKGDPGRPGRRGPPGE------IGAKGSKGYQGNSGAPGSPGVKGAK 411

Query: 61  -------PRRRSGLQGADSCDYEGGDQEYGPGDQSPGQGPEHHGPAEGLLSDGQVRAAGA 113
                  P+   G +G      +G     GP  +    GPE  GP  GL   G+V   GA
Sbjct: 412 GGPGPRGPKGEPGRRGDPGT--KGSPGSDGPKGEKGDPGPE--GP-RGLA--GEVGNKGA 464

Query: 114 EPGRPYIGDGGLHELGHHPDHAAGAGGQPHHADRRGEWPGGAGP----AQPAARG 164
           +      GD GL      P    GA G+P     RG+ PG AGP     QP  +G
Sbjct: 465 K------GDRGL----PGPRGPQGALGEPGKQGSRGD-PGDAGPRGDSGQPGPKG 508


>gi|89257348 homeo box HB9 [Homo sapiens]
          Length = 401

 Score = 37.4 bits (85), Expect = 0.012
 Identities = 48/156 (30%), Positives = 53/156 (33%), Gaps = 20/156 (12%)

Query: 7   AAGEAGQEGGEGLQGGAGQSEEGPSAEKCRVCPCVCRERHPQEERRCELASDGVPRRRSG 66
           A+G  G  GG G  GG   S    S+E         R   P   R   LA+      + G
Sbjct: 38  ASGTGGGGGGGGASGGTSGSCSPASSEPPAAPADRLRAESPSPPRL--LAAHCALLPKPG 95

Query: 67  LQGADSCDYEGGDQEYGPGDQSPGQGPEHHGPAEGLLSDGQVRAAGAEPGRPYIGDGGLH 126
             GA      GG    G G    G G  HH    G  +     AA A  G       GL 
Sbjct: 96  FLGA------GG----GGGGTGGGHGGPHHHAHPGAAAAAAAAAAAAAAG-------GL- 137

Query: 127 ELGHHPDHAAGAGGQPHHADRRGEWPGGAGPAQPAA 162
            LG HP  A G  G P  A   G    G   A  AA
Sbjct: 138 ALGLHPGGAQGGAGLPAQAALYGHPVYGYSAAAAAA 173



 Score = 28.1 bits (61), Expect = 7.1
 Identities = 33/110 (30%), Positives = 39/110 (35%), Gaps = 20/110 (18%)

Query: 77  GGDQEYGPGDQSPGQGPEHHGPAEGLLSDG----QVRAAGA----EPGRPYIGDGGLHEL 128
           GG      G  SP        PA+ L ++     ++ AA      +PG    G GG    
Sbjct: 48  GGASGGTSGSCSPASSEPPAAPADRLRAESPSPPRLLAAHCALLPKPGFLGAGGGGGGTG 107

Query: 129 GHHPDHAAGAGGQPHHADRRGEWPGGAGPAQPAARGRLCRGRELCAQPGG 178
           G H       GG  HHA      PG A  A  AA      G  L   PGG
Sbjct: 108 GGH-------GGPHHHAH-----PGAAAAAAAAAAAAAAGGLALGLHPGG 145


>gi|17402904 homolog of yeast mRNA transport regulator 3 [Homo
           sapiens]
          Length = 272

 Score = 37.4 bits (85), Expect = 0.012
 Identities = 50/163 (30%), Positives = 62/163 (38%), Gaps = 25/163 (15%)

Query: 59  GVPRRRSGLQGADSCDYEGGDQEYGPGDQSPGQGPEHHGPAEGLLSDGQVRAAGAEPGRP 118
           G  RR  G + +        D+E  PG + P +    +  A GLLS  +        G  
Sbjct: 3   GDHRRIRGPEESQPPQLYAADEEEAPGTRDPTRLRPVYARA-GLLSQAK--------GSA 53

Query: 119 YIGDGGLHELGHHPDHAAGAGGQPHHADRRGEWPGGAGPAQPAA-RGRLC--------RG 169
           Y+  GG   L       A +G +      RG  P GAG   PAA RGRL          G
Sbjct: 54  YLEAGGTKVL------CAVSGPRQAEGGERGGGPAGAGGEAPAALRGRLLCDFRRAPFAG 107

Query: 170 RELCAQPGGPAVTEVG-RLEELAVPRRCAPPLPRDVLEGSCPL 211
           R   A PGG    E+   L+E   P       PR  LE S  L
Sbjct: 108 RRRRAPPGGCEERELALALQEALEPAVRLGRYPRAQLEVSALL 150


>gi|154355000 KH-type splicing regulatory protein [Homo sapiens]
          Length = 711

 Score = 36.6 bits (83), Expect = 0.020
 Identities = 35/106 (33%), Positives = 42/106 (39%), Gaps = 14/106 (13%)

Query: 81  EYGPGDQSPGQGPEHHGPAEGLLSDGQVRAAGAEPGRPYIGDGGLHELGHHPDHAAGAGG 140
           +Y  G   PG  P    PA G    G     G  PG P  GD G    G  P      GG
Sbjct: 3   DYSTGGPPPGPPP----PAGGGGGAGGA-GGGPPPGPPGAGDRG----GGGPGGGGPGGG 53

Query: 141 QPHHADRRGEWPGGAGPA--QPAARGRLCRGRELCAQPGGPAVTEV 184
               A    + PGG GP   + A    + R R++ A+ GG A T V
Sbjct: 54  S---AGGPSQPPGGGGPGIRKDAFADAVQRARQIAAKIGGDAATTV 96


>gi|32140760 collagen, type XXVII, alpha 1 [Homo sapiens]
          Length = 1860

 Score = 36.6 bits (83), Expect = 0.020
 Identities = 51/176 (28%), Positives = 68/176 (38%), Gaps = 23/176 (13%)

Query: 9    GEAGQEGGEGLQGGAGQSEE----------GPSAEKCRVCPCVCRERHPQEERRCELASD 58
            G  GQEG +GL+G  GQ  +          GP   K    P   + +     RR      
Sbjct: 1364 GYPGQEGVQGLRGKPGQQGQPGHPGPRGWPGPKGSKGAEGPKGKQGKAGAPGRRGVQGLQ 1423

Query: 59   GVPR-----RRSGLQGADSCD-YEGGDQEYG-PGDQSPGQGPEHHGPAEGLLSDGQVRAA 111
            G+P       R GL+G    D   G D + G  G+Q     P   GPA    + G     
Sbjct: 1424 GLPGPRGVVGRQGLEGIAGPDGLPGRDGQAGQQGEQGDDGDPGPMGPAGKRGNPGVAGLP 1483

Query: 112  GAEPGRPYIGDGGL-HELGHHPDHAAGAGGQPHHADRRGEWPGGAGPAQPAARGRL 166
            GA+    + G+ GL  +LG  P    G  G+      +GE PG  G  QP   G +
Sbjct: 1484 GAQGPPGFKGESGLPGQLG--PPGKRGTEGRTGLPGNQGE-PGSKG--QPGDSGEM 1534



 Score = 27.7 bits (60), Expect = 9.2
 Identities = 50/156 (32%), Positives = 62/156 (39%), Gaps = 35/156 (22%)

Query: 9    GEAGQEGGEGLQGGAG-QSEEGPSAEKCRVCPCVCRERHPQEERRCELASDGVP--RRRS 65
            G AG++G  GL+G  G Q   G   ++      V  ER         L S G P     S
Sbjct: 1072 GPAGEQGSRGLKGPPGPQGRPGRPGQQ-----GVAGERG-------HLGSRGFPGIPGPS 1119

Query: 66   GLQGADSCDYEGGDQEYGPGDQSPGQGPEHHGPAEGLLSDGQVRAAGAEPGRPYIGDGGL 125
            G  G      E       PG Q P QGP   GP   +   G   A G EPG P  G+ G+
Sbjct: 1120 GPPGTKGLPGE-------PGPQGP-QGP--IGPPGEMGPKGPPGAVG-EPGLP--GEAGM 1166

Query: 126  H-ELGHHPDHAAGAGGQPHHADRRGEWPGGAGPAQP 160
              +LG       G  G+     +RGE PG  G + P
Sbjct: 1167 KGDLG-----PLGTPGEQGLIGQRGE-PGLEGDSGP 1196


>gi|21735552 mitogen-activated protein kinase kinase kinase 12 [Homo
           sapiens]
          Length = 859

 Score = 36.2 bits (82), Expect = 0.026
 Identities = 37/128 (28%), Positives = 46/128 (35%), Gaps = 7/128 (5%)

Query: 13  QEGGEGLQGGAGQSEEGPSAEKCRVCPCVCRERHPQEERRCELASDGVPRRRSGLQGADS 72
           + GG G  GG G    GPSA +   CP   R  H   +      S   P   S   G+  
Sbjct: 570 EPGGPGSPGGLGG---GPSAWEA--CPPALRGLH--HDLLLRKMSSSSPDLLSAALGSRG 622

Query: 73  CDYEGGDQEYGPGDQSPGQGPEHHGPAEGLLSDGQVRAAGAEPGRPYIGDGGLHELGHHP 132
               GG  + G    + G  P   G A G  S      A  EP  P     G+  LG   
Sbjct: 623 RGATGGAGDPGSPPPARGDTPPSEGSAPGSTSPDSPGGAKGEPPPPVGPGEGVGLLGTGR 682

Query: 133 DHAAGAGG 140
           +  +G GG
Sbjct: 683 EGTSGRGG 690


>gi|169213065 PREDICTED: similar to hCG1654128 [Homo sapiens]
          Length = 851

 Score = 36.2 bits (82), Expect = 0.026
 Identities = 34/125 (27%), Positives = 47/125 (37%), Gaps = 17/125 (13%)

Query: 4   HGEAAGEAGQEGGEGLQGGAGQSEEGPSAEKCRVCPCVCRERHPQEERRCELASDGVPRR 63
           HG    E G E     + G  Q E+GP            +E  P++    E    G+ + 
Sbjct: 114 HGVDQQEDGPEDARPTEHGIDQEEDGPEDASLTEHGVDQQEDGPEDASPTE---HGIDQE 170

Query: 64  RSGLQGADSCDYEGG--DQEYGPGDQSPGQ--------GPEHHGPAEGLLSDGQVRAAGA 113
             G + A   ++E G   +E GP D SP +        GPE   P E     G  +  G 
Sbjct: 171 EDGPEDASPTEHEHGVDQEEDGPEDASPTEHGVDQEEDGPEDASPTE----HGVDQEDGP 226

Query: 114 EPGRP 118
           E  RP
Sbjct: 227 EDARP 231



 Score = 28.5 bits (62), Expect = 5.4
 Identities = 26/85 (30%), Positives = 36/85 (42%), Gaps = 6/85 (7%)

Query: 4   HGEAAGEAGQEGGEGLQGGAGQSEEGPSAEKCRVCPCVCRERHPQEERRCELASDGVPRR 63
           HG    E G E     + G  Q E+GP  +       V +E  P++ R  E   D    +
Sbjct: 184 HGVDQEEDGPEDASPTEHGVDQEEDGPE-DASPTEHGVDQEDGPEDARPTEHGVD----Q 238

Query: 64  RSGLQGADSCDYEGGDQEYGPGDQS 88
             G + A   ++ G DQE GP D S
Sbjct: 239 EDGPEDARPTEH-GVDQEDGPEDAS 262


>gi|113204617 skeletal muscle ryanodine receptor isoform 2 [Homo
            sapiens]
          Length = 5033

 Score = 36.2 bits (82), Expect = 0.026
 Identities = 32/97 (32%), Positives = 38/97 (39%), Gaps = 17/97 (17%)

Query: 2    DVHGEA-AGEAGQEGGEGLQGGAGQSEEGPSAEKCRVCPCVCRERHPQEERRCELASDGV 60
            +VHGE  AG  G   GEG   GAG + EG   E+  V      E  P         +DG 
Sbjct: 4385 EVHGEQPAGPGGDADGEGASEGAGDAAEGAGDEEEAV-----HEAGPGGADGAVAVTDGG 4439

Query: 61   PRRRSGLQGADSCDYEGGDQEYGPGDQSPGQGPEHHG 97
            P R  G  G        GD     GD +P + P   G
Sbjct: 4440 PFRPEGAGGL-------GDM----GDTTPAEPPTPEG 4465


>gi|113204615 skeletal muscle ryanodine receptor isoform 1 [Homo
            sapiens]
          Length = 5038

 Score = 36.2 bits (82), Expect = 0.026
 Identities = 32/97 (32%), Positives = 38/97 (39%), Gaps = 17/97 (17%)

Query: 2    DVHGEA-AGEAGQEGGEGLQGGAGQSEEGPSAEKCRVCPCVCRERHPQEERRCELASDGV 60
            +VHGE  AG  G   GEG   GAG + EG   E+  V      E  P         +DG 
Sbjct: 4390 EVHGEQPAGPGGDADGEGASEGAGDAAEGAGDEEEAV-----HEAGPGGADGAVAVTDGG 4444

Query: 61   PRRRSGLQGADSCDYEGGDQEYGPGDQSPGQGPEHHG 97
            P R  G  G        GD     GD +P + P   G
Sbjct: 4445 PFRPEGAGGL-------GDM----GDTTPAEPPTPEG 4470


>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
          Length = 1464

 Score = 35.8 bits (81), Expect = 0.034
 Identities = 46/160 (28%), Positives = 56/160 (35%), Gaps = 24/160 (15%)

Query: 7   AAGEAGQEGGEGLQGGAGQSEEGPSAEKCRVCPCVCRERHPQEERRCELASDGVPRRRSG 66
           A G+AG  G  G QG  G                   +  P E     L      R  +G
Sbjct: 708 AKGDAGAPGAPGSQGAPG------------------LQGMPGERGAAGLPGPKGDRGDAG 749

Query: 67  LQGADSCDYEGGDQEY-GP-GDQSPGQGPEHHGPAEGLLSDGQVRAAGAEPGRPYIGDGG 124
            +GAD    + G +   GP G   P   P   G +      G   A GA   R   G  G
Sbjct: 750 PKGADGSPGKDGVRGLTGPIGPPGPAGAPGDKGESGPSGPAGPTGARGAPGDRGEPGPPG 809

Query: 125 LHELGHHP--DHAAGAGGQPHHADRRGEW--PGGAGPAQP 160
                  P  D   GA G+P  A  +G+   PG AGPA P
Sbjct: 810 PAGFAGPPGADGQPGAKGEPGDAGAKGDAGPPGPAGPAGP 849



 Score = 32.7 bits (73), Expect = 0.29
 Identities = 47/187 (25%), Positives = 65/187 (34%), Gaps = 24/187 (12%)

Query: 9    GEAGQEGGEGLQGGAGQSEEGPSAEKCRVCP-----CVCRERHPQEERRCELASDGVPRR 63
            G AG+EGG+G +G     E GP+     V P         +  P  +          P+ 
Sbjct: 899  GPAGKEGGKGPRG-----ETGPAGRPGEVGPPGPPGPAGEKGSPGADGPAGAPGTPGPQG 953

Query: 64   RSGLQGADSCDYEGGDQEYGPGDQSPGQGPEHHGPAEGLLSDGQVRAAGAEPGRPYIGDG 123
             +G +G      + G++ + PG   P   P   GP+      G     G        G+ 
Sbjct: 954  IAGQRGVVGLPGQRGERGF-PGLPGPSGEPGKQGPSGASGERGPPGPMGPPGLAGPPGES 1012

Query: 124  GLHELGHHPDHAAGAGGQPHHADRRGEW-----------PGGAGPAQPAARGRLCRGREL 172
            G  E     + + G  G P     RGE            PG  GP  PA +    RG   
Sbjct: 1013 G-REGAPGAEGSPGRDGSPGAKGDRGETGPAGPPGAPGAPGAPGPVGPAGKSG-DRGETG 1070

Query: 173  CAQPGGP 179
             A P GP
Sbjct: 1071 PAGPAGP 1077



 Score = 28.5 bits (62), Expect = 5.4
 Identities = 54/184 (29%), Positives = 64/184 (34%), Gaps = 21/184 (11%)

Query: 5   GEAA--GEAGQEGGEGLQGGAGQSEEGPSAEKCRVCPCVCRERHPQEERRCELASDGVPR 62
           GEA   GEAG  G +GL G  G    GP  +     P        Q+ R       G  R
Sbjct: 524 GEAGRPGEAGLPGAKGLTGSPG--SPGPDGKTGPPGPA------GQDGRPGPPGPPGA-R 574

Query: 63  RRSGLQGADSCDYEGGDQEYGPGDQSPGQGPEHHGPAEGLLSDGQVRAAGAEPGRPYIGD 122
            ++G+ G        G+         PG  P   GPA     DG+  A G        G+
Sbjct: 575 GQAGVMGFPGPKGAAGEPGKAGERGVPGP-PGAVGPAG---KDGEAGAQGPPGPAGPAGE 630

Query: 123 GGLHELGHHPDHAA--GAGGQPHHADRRGEW--PGGAG-PAQPAARG-RLCRGRELCAQP 176
            G       P      G  G P  A + GE   PG  G P    ARG R   G      P
Sbjct: 631 RGEQGPAGSPGFQGLPGPAGPPGEAGKPGEQGVPGDLGAPGPSGARGERGFPGERGVQGP 690

Query: 177 GGPA 180
            GPA
Sbjct: 691 PGPA 694


>gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens]
          Length = 1499

 Score = 35.8 bits (81), Expect = 0.034
 Identities = 52/184 (28%), Positives = 64/184 (34%), Gaps = 15/184 (8%)

Query: 4    HGEAA--GEAGQEGGEGLQGGAGQS-EEGPSAEKCRVCPCVCRERHPQEERRCELASDGV 60
            HG     G AG  GG G +G  G+  + GP            R       +R E    G+
Sbjct: 950  HGRVGDRGPAGPPGGPGDKGDPGEDGQPGPDGPPGPAGTTGQRGIVGMPGQRGERGMPGL 1009

Query: 61   PRRRSGLQGADSCDYEGGDQEYG-----PGDQSPGQGPEHHGPAEGLLSDGQVRAAGAEP 115
            P   +G  G        GD+        PG   P   P   GPA    + G+  A G   
Sbjct: 1010 PGP-AGTPGKVGPTGATGDKGPPGPVGPPGSNGPVGEPGPEGPAGNDGTPGRDGAVGERG 1068

Query: 116  GRPYIGDGGLHELGHHPDHAAGAGGQPHHADRRGEWPGGAGPAQPAARGRLCRGRELCAQ 175
             R   G  GL      P    G  G P  A +RG+ PG  GP  P  R     G+     
Sbjct: 1069 DRGDPGPAGLPGSQGAPG-TPGPVGAPGDAGQRGD-PGSRGPIGPPGRA----GKRGLPG 1122

Query: 176  PGGP 179
            P GP
Sbjct: 1123 PQGP 1126



 Score = 29.3 bits (64), Expect = 3.2
 Identities = 43/136 (31%), Positives = 48/136 (35%), Gaps = 38/136 (27%)

Query: 61  PRRRSGLQGADSCDYEGGDQEYGP----GDQSP-----GQGPEHHGPAEGLLSDGQ---- 107
           PR   GLQG      +GG    GP    GD  P      +GPE  GP      DG+    
Sbjct: 220 PRGPQGLQGQ-----QGGAGPTGPPGEPGDPGPMGPIGSRGPE--GPPGKPGEDGEPGRN 272

Query: 108 -----VRAAGAEPGRPYIGDGGLHELGHHPDH--------AAGAGGQPHHADRRGEWPGG 154
                V  AG+   R + G  GL  L  H  H          GA G    A   G   G 
Sbjct: 273 GNPGEVGFAGSPGARGFPGAPGLPGLKGHRGHKGLEGPKGEVGAPGSKGEAGPTGPM-GA 331

Query: 155 AGP----AQPAARGRL 166
            GP      P  RGRL
Sbjct: 332 MGPLGPRGMPGERGRL 347


>gi|150378478 PR domain containing 8 [Homo sapiens]
          Length = 689

 Score = 35.8 bits (81), Expect = 0.034
 Identities = 33/118 (27%), Positives = 44/118 (37%), Gaps = 11/118 (9%)

Query: 47  PQEERRCELASDGVPRRRSGLQGADSCDYEGGDQE--YGPGDQSPGQGPEHHGPAEGLLS 104
           PQ+E+       GV  +  G  G    D +   QE   GPG +    GP HH P+    S
Sbjct: 189 PQDEQ-----GGGVGTKDHGGGGGGGKDQQQQQQEAPLGPGPKFCKAGPLHHYPSPSPES 243

Query: 105 DGQVRAAGAEPGRPYIGDGGLHELGHHPDHAAGAGG-QPHHADRRGEWPGGAGPAQPA 161
                AAG    +P       H L    +++ G     P  +   G   GG G  Q A
Sbjct: 244 SNPSAAAGGSSAKP---STDFHNLARELENSRGGSSCSPAQSLSSGSGSGGGGGHQEA 298


>gi|150378439 PR domain containing 8 [Homo sapiens]
          Length = 689

 Score = 35.8 bits (81), Expect = 0.034
 Identities = 33/118 (27%), Positives = 44/118 (37%), Gaps = 11/118 (9%)

Query: 47  PQEERRCELASDGVPRRRSGLQGADSCDYEGGDQE--YGPGDQSPGQGPEHHGPAEGLLS 104
           PQ+E+       GV  +  G  G    D +   QE   GPG +    GP HH P+    S
Sbjct: 189 PQDEQ-----GGGVGTKDHGGGGGGGKDQQQQQQEAPLGPGPKFCKAGPLHHYPSPSPES 243

Query: 105 DGQVRAAGAEPGRPYIGDGGLHELGHHPDHAAGAGG-QPHHADRRGEWPGGAGPAQPA 161
                AAG    +P       H L    +++ G     P  +   G   GG G  Q A
Sbjct: 244 SNPSAAAGGSSAKP---STDFHNLARELENSRGGSSCSPAQSLSSGSGSGGGGGHQEA 298


>gi|169213233 PREDICTED: similar to hCG1654128 [Homo sapiens]
          Length = 1070

 Score = 35.4 bits (80), Expect = 0.044
 Identities = 32/123 (26%), Positives = 45/123 (36%), Gaps = 15/123 (12%)

Query: 4   HGEAAGEAGQEGGEGLQGGAGQSEEGPSAEKCRVCPCVCRERHPQEERRCELASDGVPRR 63
           HG    E G E     + G  Q E+GP            +E  P++    E    G+ + 
Sbjct: 335 HGVDQQEDGPEDARPTEHGIDQEEDGPEDASLTEHGVDQQEDGPEDASPTE---HGIDQE 391

Query: 64  RSGLQGADSCDYEGGDQEYGPGDQSPGQ--------GPEHHGPAEGLLSDGQVRAAGAEP 115
             G + A   ++    +E GP D SP +        GPE   P E     G  +  G E 
Sbjct: 392 EDGPEDASPTEHGVDQEEDGPEDASPTEHGVDQEEDGPEDASPTE----HGVDQEDGPED 447

Query: 116 GRP 118
            RP
Sbjct: 448 ARP 450



 Score = 28.5 bits (62), Expect = 5.4
 Identities = 26/85 (30%), Positives = 36/85 (42%), Gaps = 6/85 (7%)

Query: 4   HGEAAGEAGQEGGEGLQGGAGQSEEGPSAEKCRVCPCVCRERHPQEERRCELASDGVPRR 63
           HG    E G E     + G  Q E+GP  +       V +E  P++ R  E   D    +
Sbjct: 403 HGVDQEEDGPEDASPTEHGVDQEEDGPE-DASPTEHGVDQEDGPEDARPTEHGVD----Q 457

Query: 64  RSGLQGADSCDYEGGDQEYGPGDQS 88
             G + A   ++ G DQE GP D S
Sbjct: 458 EDGPEDARPTEH-GVDQEDGPEDAS 481


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.314    0.138    0.453 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,979,252
Number of Sequences: 37866
Number of extensions: 920497
Number of successful extensions: 3706
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 346
Number of HSP's that attempted gapping in prelim test: 3213
Number of HSP's gapped (non-prelim): 776
length of query: 240
length of database: 18,247,518
effective HSP length: 99
effective length of query: 141
effective length of database: 14,498,784
effective search space: 2044328544
effective search space used: 2044328544
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.