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Search of human proteins with 13399330
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|13399330 uroplakin 3B isoform a [Homo sapiens]
(320 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|13399330 uroplakin 3B isoform a [Homo sapiens] 687 0.0
gi|33149306 uroplakin 3B isoform b [Homo sapiens] 292 2e-79
gi|167555123 uroplakin-like protein [Homo sapiens] 91 1e-18
gi|148833506 obscurin, cytoskeletal calmodulin and titin-interac... 38 0.010
gi|5902152 uroplakin 3A precursor [Homo sapiens] 37 0.031
gi|45331217 zinc finger protein 526 [Homo sapiens] 35 0.068
gi|5902108 SRY-box 21 [Homo sapiens] 34 0.20
gi|169207217 PREDICTED: zinc finger homeobox 2 [Homo sapiens] 33 0.34
gi|169207592 PREDICTED: zinc finger homeobox 2 [Homo sapiens] 33 0.34
gi|169207014 PREDICTED: zinc finger homeobox 2 [Homo sapiens] 33 0.34
gi|19924099 synapsin I isoform Ia [Homo sapiens] 33 0.34
gi|19924097 synapsin I isoform Ib [Homo sapiens] 33 0.34
gi|119220564 one cut domain, family member 2 [Homo sapiens] 33 0.34
gi|30089935 transmembrane protein 132A isoform a [Homo sapiens] 33 0.34
gi|30089937 transmembrane protein 132A isoform b [Homo sapiens] 33 0.34
gi|239751558 PREDICTED: similar to hCG1790759 [Homo sapiens] 33 0.44
gi|169212818 PREDICTED: similar to hCG1790759 [Homo sapiens] 33 0.44
gi|75677325 kinase suppressor of ras [Homo sapiens] 33 0.44
gi|158420731 chromodomain helicase DNA binding protein 3 isoform... 33 0.44
gi|110832843 TBP-associated factor 4 [Homo sapiens] 32 0.58
gi|122891870 melanoma inhibitory activity family, member 3 [Homo... 32 0.58
gi|139394646 iroquois homeobox protein 5 [Homo sapiens] 32 0.58
gi|85797660 limkain b1 [Homo sapiens] 32 0.58
gi|41281981 toll-like receptor adaptor molecule 1 [Homo sapiens] 32 0.75
gi|119943102 CREB binding protein isoform b [Homo sapiens] 32 0.98
gi|119943104 CREB binding protein isoform a [Homo sapiens] 32 0.98
gi|5174711 T-box 1 isoform B [Homo sapiens] 32 0.98
gi|18104952 T-box 1 isoform C [Homo sapiens] 32 0.98
gi|18104950 T-box 1 isoform A [Homo sapiens] 32 0.98
gi|11968019 p53 target zinc finger protein isoform 1 [Homo sapiens] 32 0.98
>gi|13399330 uroplakin 3B isoform a [Homo sapiens]
Length = 320
Score = 687 bits (1773), Expect = 0.0
Identities = 320/320 (100%), Positives = 320/320 (100%)
Query: 1 MGLPWGQPHLGLQMLLLALNCLRPSLSLGEWGSWMDASSQTQGAGGPAGVIGPWAPAPLR 60
MGLPWGQPHLGLQMLLLALNCLRPSLSLGEWGSWMDASSQTQGAGGPAGVIGPWAPAPLR
Sbjct: 1 MGLPWGQPHLGLQMLLLALNCLRPSLSLGEWGSWMDASSQTQGAGGPAGVIGPWAPAPLR 60
Query: 61 LGEAAPGTPTPVSVAHLLSPVATELVPYTPQITAWDLEGKVTATTFSLEQPRCVFDGLAS 120
LGEAAPGTPTPVSVAHLLSPVATELVPYTPQITAWDLEGKVTATTFSLEQPRCVFDGLAS
Sbjct: 61 LGEAAPGTPTPVSVAHLLSPVATELVPYTPQITAWDLEGKVTATTFSLEQPRCVFDGLAS 120
Query: 121 ASDTVWLVVAFSNASRGFQNPETLADIPASPQLLTDGHYMTLPLSPDQLPCGDPMAGSGG 180
ASDTVWLVVAFSNASRGFQNPETLADIPASPQLLTDGHYMTLPLSPDQLPCGDPMAGSGG
Sbjct: 121 ASDTVWLVVAFSNASRGFQNPETLADIPASPQLLTDGHYMTLPLSPDQLPCGDPMAGSGG 180
Query: 181 APVLRVGHDHGCHQQPFCNAPLPGPGPYREDPRIHRHLARAAKWQHDRHYLHPLFSGRPP 240
APVLRVGHDHGCHQQPFCNAPLPGPGPYREDPRIHRHLARAAKWQHDRHYLHPLFSGRPP
Sbjct: 181 APVLRVGHDHGCHQQPFCNAPLPGPGPYREDPRIHRHLARAAKWQHDRHYLHPLFSGRPP 240
Query: 241 TLGLLGSLYHALLQPVVAGGGPGAAADRLLHGQALHDPPHPTQRGRHTAGGLQAWPGPPP 300
TLGLLGSLYHALLQPVVAGGGPGAAADRLLHGQALHDPPHPTQRGRHTAGGLQAWPGPPP
Sbjct: 241 TLGLLGSLYHALLQPVVAGGGPGAAADRLLHGQALHDPPHPTQRGRHTAGGLQAWPGPPP 300
Query: 301 QPQPLAWPLCMGLGEMGRRE 320
QPQPLAWPLCMGLGEMGRRE
Sbjct: 301 QPQPLAWPLCMGLGEMGRRE 320
>gi|33149306 uroplakin 3B isoform b [Homo sapiens]
Length = 276
Score = 292 bits (748), Expect = 2e-79
Identities = 151/209 (72%), Positives = 151/209 (72%), Gaps = 55/209 (26%)
Query: 1 MGLPWGQPHLGLQMLLLALNCLRPSLSLGEWGSWMDASSQTQGAGGPAGVIGPWAPAPLR 60
MGLPWGQPHLGLQMLLLALNCLRPSLSL
Sbjct: 1 MGLPWGQPHLGLQMLLLALNCLRPSLSL-------------------------------- 28
Query: 61 LGEAAPGTPTPVSVAHLLSPVATELVPYTPQITAWDLEGKVTATTFSLEQPRCVFDGLAS 120
E P T PQITAWDLEGKVTATTFSLEQPRCVFDGLAS
Sbjct: 29 --ELVPYT---------------------PQITAWDLEGKVTATTFSLEQPRCVFDGLAS 65
Query: 121 ASDTVWLVVAFSNASRGFQNPETLADIPASPQLLTDGHYMTLPLSPDQLPCGDPMAGSGG 180
ASDTVWLVVAFSNASRGFQNPETLADIPASPQLLTDGHYMTLPLSPDQLPCGDPMAGSGG
Sbjct: 66 ASDTVWLVVAFSNASRGFQNPETLADIPASPQLLTDGHYMTLPLSPDQLPCGDPMAGSGG 125
Query: 181 APVLRVGHDHGCHQQPFCNAPLPGPGPYR 209
APVLRVGHDHGCHQQPFCNAPLPGPGPYR
Sbjct: 126 APVLRVGHDHGCHQQPFCNAPLPGPGPYR 154
>gi|167555123 uroplakin-like protein [Homo sapiens]
Length = 263
Score = 90.9 bits (224), Expect = 1e-18
Identities = 65/165 (39%), Positives = 84/165 (50%), Gaps = 16/165 (9%)
Query: 54 WAPAPLRLGEAAPGTPTPVSVAHLLSPV-------ATELVPYTPQITAWDLEGKVTATTF 106
W P +G +A + VS+ LL+ V A E + Y PQ++ L G++T +TF
Sbjct: 5 WRLGPA-IGLSAGQSQLLVSLLLLLTRVQPGTDVAAPEHISYVPQLSNDTLAGRLTLSTF 63
Query: 107 SLEQPRCVFDGL-ASASDTVWLVVAFSNASRGFQNPETLADIPASPQLLTDGHYMTLPLS 165
+LEQP F S DT+WLVVA SNA++ F P T DIPA G+Y+TL +
Sbjct: 64 TLEQPLGQFSSHNISDLDTIWLVVALSNATQSFTAPRTNQDIPAPANFSQRGYYLTLRAN 123
Query: 166 PDQLPCGDPMAGSGGAPVLRVGHDHGCHQQPF-CNAPLPGPGPYR 209
G VLRVG+D C CN PLPGPGPYR
Sbjct: 124 RVLYQT------RGQLHVLRVGNDTHCQPTKIGCNHPLPGPGPYR 162
>gi|148833506 obscurin, cytoskeletal calmodulin and titin-interacting
RhoGEF isoform b [Homo sapiens]
Length = 7968
Score = 38.1 bits (87), Expect = 0.010
Identities = 36/131 (27%), Positives = 44/131 (33%), Gaps = 22/131 (16%)
Query: 142 ETLADIPASPQLLTDGHYMTLPLSPDQLP------CGD----PMAGSGGAPVLRVGHDHG 191
ET +PAS L GH +L P CG+ P A SGGAP+ +GH G
Sbjct: 6944 ETALRLPASGTHLAPGHSHSLEHDSPSTPRPSSEACGEAQRLPSAPSGGAPIRDMGHPQG 7003
Query: 192 CHQQPFCNAPLPGPGPYREDPRIHRHLARAAKWQHDRHYLHPLFSGRPPTLGLLGSLYHA 251
Q P P R P + W + HP P G H
Sbjct: 7004 SKQLPSTGGHPGTAQPERPSP--------DSPWGQPAPFCHPKQGSAPQE----GCSPHP 7051
Query: 252 LLQPVVAGGGP 262
+ P G P
Sbjct: 7052 AVAPCPPGSFP 7062
>gi|5902152 uroplakin 3A precursor [Homo sapiens]
Length = 287
Score = 36.6 bits (83), Expect = 0.031
Identities = 37/128 (28%), Positives = 54/128 (42%), Gaps = 20/128 (15%)
Query: 102 TATTFSLEQPRCVFDGLASASDT--VWLVVAFSNASRGFQNPETLADIPASPQLLTDGHY 159
T TT +LE+P C+FD + + T V+L V +A + + + P L
Sbjct: 36 TLTTVALEKPLCMFDSKEALTGTHEVYLYVLVDSAISRNASVQDSTNTPLGSTFLQTEGG 95
Query: 160 MTLP---LSPDQLPCGD-PMAGSGG----------APVLRVGHDHGCHQQP----FCNAP 201
T P ++ D +PC D P + G A ++RVG + C P CNAP
Sbjct: 96 RTGPYKAVAFDLIPCSDLPSLDAIGDVSKASQILNAYLVRVGANGTCLWDPNFQGLCNAP 155
Query: 202 LPGPGPYR 209
L YR
Sbjct: 156 LSAATEYR 163
>gi|45331217 zinc finger protein 526 [Homo sapiens]
Length = 670
Score = 35.4 bits (80), Expect = 0.068
Identities = 29/91 (31%), Positives = 36/91 (39%), Gaps = 5/91 (5%)
Query: 225 QHDRHYLHPLFSGRPPTLGLLGSLYHALLQPVVAGGGPGAAADRLLHGQALHDPPHPTQR 284
QH R +L P+ R P L + G LY+ P G R + G LH H R
Sbjct: 545 QHRRLHLRPVAFARAPRLPITG-LYNK--SPYYCG--TCGRWFRAMAGLRLHQRVHARAR 599
Query: 285 GRHTAGGLQAWPGPPPQPQPLAWPLCMGLGE 315
P PPP P+P +C LGE
Sbjct: 600 TLTLQPPRSPSPAPPPPPEPQQTIMCTELGE 630
>gi|5902108 SRY-box 21 [Homo sapiens]
Length = 276
Score = 33.9 bits (76), Expect = 0.20
Identities = 21/57 (36%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
Query: 259 GGGPGAAADRLLHGQALHDPPHPTQRGRHTAGGLQAWPGPPPQPQPLAWPLCMGLGE 315
G AAA G H P P G AWP P QP PLA+ L G+G+
Sbjct: 207 GAAAAAAAAAAAAGGHTHSHPSPGNPGYMIPCNCSAWPSPGLQP-PLAYILLPGMGK 262
>gi|169207217 PREDICTED: zinc finger homeobox 2 [Homo sapiens]
Length = 2790
Score = 33.1 bits (74), Expect = 0.34
Identities = 26/73 (35%), Positives = 29/73 (39%), Gaps = 10/73 (13%)
Query: 231 LHPLFSGRPPTLGLLGSLYHAL-LQPVVAGGGPGAAADRLLHGQALHDPPHPTQRGRHTA 289
L P SG + GLLG L VV GPG + L P P Q TA
Sbjct: 2459 LAPFNSGPAASSGLLGLATSVLPTTTVVQTAGPG---------RPLPQRPMPDQTNTSTA 2509
Query: 290 GGLQAWPGPPPQP 302
G PGPP +P
Sbjct: 2510 GTTDPVPGPPTEP 2522
>gi|169207592 PREDICTED: zinc finger homeobox 2 [Homo sapiens]
Length = 2706
Score = 33.1 bits (74), Expect = 0.34
Identities = 26/73 (35%), Positives = 29/73 (39%), Gaps = 10/73 (13%)
Query: 231 LHPLFSGRPPTLGLLGSLYHAL-LQPVVAGGGPGAAADRLLHGQALHDPPHPTQRGRHTA 289
L P SG + GLLG L VV GPG + L P P Q TA
Sbjct: 2375 LAPFNSGPAASSGLLGLATSVLPTTTVVQTAGPG---------RPLPQRPMPDQTNTSTA 2425
Query: 290 GGLQAWPGPPPQP 302
G PGPP +P
Sbjct: 2426 GTTDPVPGPPTEP 2438
>gi|169207014 PREDICTED: zinc finger homeobox 2 [Homo sapiens]
Length = 2706
Score = 33.1 bits (74), Expect = 0.34
Identities = 26/73 (35%), Positives = 29/73 (39%), Gaps = 10/73 (13%)
Query: 231 LHPLFSGRPPTLGLLGSLYHAL-LQPVVAGGGPGAAADRLLHGQALHDPPHPTQRGRHTA 289
L P SG + GLLG L VV GPG + L P P Q TA
Sbjct: 2375 LAPFNSGPAASSGLLGLATSVLPTTTVVQTAGPG---------RPLPQRPMPDQTNTSTA 2425
Query: 290 GGLQAWPGPPPQP 302
G PGPP +P
Sbjct: 2426 GTTDPVPGPPTEP 2438
>gi|19924099 synapsin I isoform Ia [Homo sapiens]
Length = 705
Score = 33.1 bits (74), Expect = 0.34
Identities = 40/144 (27%), Positives = 50/144 (34%), Gaps = 29/144 (20%)
Query: 165 SPDQLPCGDPMAGSGGAPVLRVGHDHGCHQQPFCNAPLPGPGPYREDPRIHRHLARAAKW 224
SP LP G + P + P P PGPGP R+ P + + +
Sbjct: 438 SPGALPLGRQTSQQPAGPPAQQ------RPPPQGGPPQPGPGPQRQGPPLQQRPPPQGQ- 490
Query: 225 QHDRHYLHPLFSGRPPTLGLLGSLYHALLQPVVAGGGPGAAADRLLHGQALHDPPHPTQR 284
QH SG P G L L P A P + A GQ ++
Sbjct: 491 QH--------LSGLGPPAG--SPLPQRLPSPTSAPQQPASQAAPPTQGQG--------RQ 532
Query: 285 GRHTAGGLQAWPGPPPQPQPLAWP 308
R AGG PG PP +P A P
Sbjct: 533 SRPVAGG----PGAPPAARPPASP 552
>gi|19924097 synapsin I isoform Ib [Homo sapiens]
Length = 669
Score = 33.1 bits (74), Expect = 0.34
Identities = 40/144 (27%), Positives = 50/144 (34%), Gaps = 29/144 (20%)
Query: 165 SPDQLPCGDPMAGSGGAPVLRVGHDHGCHQQPFCNAPLPGPGPYREDPRIHRHLARAAKW 224
SP LP G + P + P P PGPGP R+ P + + +
Sbjct: 438 SPGALPLGRQTSQQPAGPPAQQ------RPPPQGGPPQPGPGPQRQGPPLQQRPPPQGQ- 490
Query: 225 QHDRHYLHPLFSGRPPTLGLLGSLYHALLQPVVAGGGPGAAADRLLHGQALHDPPHPTQR 284
QH SG P G L L P A P + A GQ ++
Sbjct: 491 QH--------LSGLGPPAG--SPLPQRLPSPTSAPQQPASQAAPPTQGQG--------RQ 532
Query: 285 GRHTAGGLQAWPGPPPQPQPLAWP 308
R AGG PG PP +P A P
Sbjct: 533 SRPVAGG----PGAPPAARPPASP 552
>gi|119220564 one cut domain, family member 2 [Homo sapiens]
Length = 504
Score = 33.1 bits (74), Expect = 0.34
Identities = 20/47 (42%), Positives = 21/47 (44%), Gaps = 7/47 (14%)
Query: 259 GGGPGAAADRLLHGQALHDPPHPTQRGRHTAGGLQAWPGPPPQPQPL 305
GGGPG H Q L P P GR AG L+ P PP Q L
Sbjct: 52 GGGPG-------HEQELLASPSPHHAGRGAAGSLRGPPPPPTAHQEL 91
>gi|30089935 transmembrane protein 132A isoform a [Homo sapiens]
Length = 1024
Score = 33.1 bits (74), Expect = 0.34
Identities = 32/82 (39%), Positives = 36/82 (43%), Gaps = 9/82 (10%)
Query: 226 HDRHYLHPLFSGRPPTLGLLGSLYHALLQPVVAGGGPGAAADRLLHGQALHDPPHPTQRG 285
+DR L S P L A L VV+G G A+ L ALH PP P +RG
Sbjct: 698 YDRRDLGLSVSAEEPGAILPAEEQGAQLGVVVSGAG----AEGLPLHVALH-PPEPCRRG 752
Query: 286 RH---TAGGLQAWPGPPPQPQP 304
RH A G AW G PP P
Sbjct: 753 RHRVPLASG-TAWLGLPPASTP 773
>gi|30089937 transmembrane protein 132A isoform b [Homo sapiens]
Length = 1023
Score = 33.1 bits (74), Expect = 0.34
Identities = 32/82 (39%), Positives = 36/82 (43%), Gaps = 9/82 (10%)
Query: 226 HDRHYLHPLFSGRPPTLGLLGSLYHALLQPVVAGGGPGAAADRLLHGQALHDPPHPTQRG 285
+DR L S P L A L VV+G G A+ L ALH PP P +RG
Sbjct: 697 YDRRDLGLSVSAEEPGAILPAEEQGAQLGVVVSGAG----AEGLPLHVALH-PPEPCRRG 751
Query: 286 RH---TAGGLQAWPGPPPQPQP 304
RH A G AW G PP P
Sbjct: 752 RHRVPLASG-TAWLGLPPASTP 772
>gi|239751558 PREDICTED: similar to hCG1790759 [Homo sapiens]
Length = 771
Score = 32.7 bits (73), Expect = 0.44
Identities = 24/66 (36%), Positives = 29/66 (43%), Gaps = 8/66 (12%)
Query: 39 SQTQGAGGPAGVIGPWAPAPLRLGEAAPGTPTPVSVAHLLSPVATELVPYTPQITAWDLE 98
S+++G PAG G APA R P + LL+P A P P AWD
Sbjct: 158 SESRGGAAPAGFKGT-APAEAR-------GPGGRRFSGLLTPSAARPDPPAPPAQAWDRR 209
Query: 99 GKVTAT 104
G VT T
Sbjct: 210 GSVTPT 215
>gi|169212818 PREDICTED: similar to hCG1790759 [Homo sapiens]
Length = 771
Score = 32.7 bits (73), Expect = 0.44
Identities = 24/66 (36%), Positives = 29/66 (43%), Gaps = 8/66 (12%)
Query: 39 SQTQGAGGPAGVIGPWAPAPLRLGEAAPGTPTPVSVAHLLSPVATELVPYTPQITAWDLE 98
S+++G PAG G APA R P + LL+P A P P AWD
Sbjct: 158 SESRGGAAPAGFKGT-APAEAR-------GPGGRRFSGLLTPSAARPDPPAPPAQAWDRR 209
Query: 99 GKVTAT 104
G VT T
Sbjct: 210 GSVTPT 215
>gi|75677325 kinase suppressor of ras [Homo sapiens]
Length = 762
Score = 32.7 bits (73), Expect = 0.44
Identities = 23/82 (28%), Positives = 31/82 (37%), Gaps = 9/82 (10%)
Query: 15 LLLALNCLRPSLSLG----EWGSWMDASSQTQGAGGPA-----GVIGPWAPAPLRLGEAA 65
L AL CLR LG E SW ++ + GP+ PW P +LG A
Sbjct: 23 LQYALTCLRKVTGLGGEHKEDSSWSSLDARRESGSGPSTDTLSAASLPWPPGSSQLGRAG 82
Query: 66 PGTPTPVSVAHLLSPVATELVP 87
P S++ P + P
Sbjct: 83 NSAQGPRSISVSALPASDSPTP 104
>gi|158420731 chromodomain helicase DNA binding protein 3 isoform 3
[Homo sapiens]
Length = 2059
Score = 32.7 bits (73), Expect = 0.44
Identities = 14/31 (45%), Positives = 16/31 (51%)
Query: 278 PPHPTQRGRHTAGGLQAWPGPPPQPQPLAWP 308
P H R RH+ G +P PPP P PL P
Sbjct: 56 PGHDRGRDRHSPPGCHLFPPPPPPPPPLPPP 86
>gi|110832843 TBP-associated factor 4 [Homo sapiens]
Length = 1085
Score = 32.3 bits (72), Expect = 0.58
Identities = 25/84 (29%), Positives = 37/84 (44%), Gaps = 11/84 (13%)
Query: 38 SSQTQGAGGPAG-----VIGPWA----PAPLRLGEAAPGTPTPVSVAHLLSPVATELVPY 88
++QT A GPA VIGP P+P + APGTPT + + T+ +
Sbjct: 357 AAQTLAASGPASTAASMVIGPTMQGALPSPAAVPPPAPGTPTGLPKG--AAGAVTQSLSR 414
Query: 89 TPQITAWDLEGKVTATTFSLEQPR 112
TP T + +T T + P+
Sbjct: 415 TPTATTSGIRATLTPTVLAPRLPQ 438
Score = 31.6 bits (70), Expect = 0.98
Identities = 29/85 (34%), Positives = 34/85 (40%), Gaps = 4/85 (4%)
Query: 221 AAKWQHDRHYLHPLFSGRPPTLGLLGSLYHALLQPVVAGGGPGAAADRLLHGQALHDPPH 280
AA H H R G LG+ + AG GP A A+ A +PP
Sbjct: 34 AASAAHHHHLAPRTPEVRAAAAGALGNHVVSGSPAGAAGAGPAAPAEGA--PGAAPEPP- 90
Query: 281 PTQRGRHTAGGLQAWPGPPPQPQPL 305
P R R GG Q PGPP +PL
Sbjct: 91 PAGRARPGGGGPQR-PGPPSPRRPL 114
>gi|122891870 melanoma inhibitory activity family, member 3 [Homo
sapiens]
Length = 1907
Score = 32.3 bits (72), Expect = 0.58
Identities = 67/276 (24%), Positives = 93/276 (33%), Gaps = 43/276 (15%)
Query: 38 SSQTQGAGGPAGVIGPWAPAPLRLGEAAPGTPTPVSVAHLLSPVATELVPY-TPQITAWD 96
++Q GP G + P+P+ GE +P P++V + P++ L P+
Sbjct: 1651 NTQNPPRRGPLSQNGSFGPSPVSGGECSP----PLTVEPPVRPLSATLNRRDMPRSEFGS 1706
Query: 97 LEGKVTATTFSLEQPRCVFDGLASASDTVWLVVAFSNASRGFQNPETLADIPASPQLLTD 156
++G + +S E G S SD N+S +P ++L +
Sbjct: 1707 VDGPLPHPRWSAEA-----SGKPSPSDPGSGTATMMNSSSRGSSP---------TRVLDE 1752
Query: 157 GHYMTLPLSPDQLP----CGDPMAGSGGAPVLRVGHDHGCHQQPFCNAPLPGP-GPYRED 211
G P P P PM G P+ C PF PLP P GP
Sbjct: 1753 GKVNMAPKGPPPFPGVPLMSTPMGGPVPPPIRYGPPPQLC--GPFGPRPLPPPFGPGMRP 1810
Query: 212 PRIHRHLARAAKWQHDRHYLHP--LFSGRPP--TLGLLGSLYHALLQPVVAGGGPGAAAD 267
P R A LHP G P LG LG + + PG
Sbjct: 1811 PLGLREFAPGVPPGRRDLPLHPRGFLPGHAPFRPLGSLGPREYFI---------PGTRLP 1861
Query: 268 RLLHGQALHDPPHPTQRGRHTAGGLQAWPGPPPQPQ 303
HG + PP P R +G PPP Q
Sbjct: 1862 PPTHGPQEYPPP-PAVRDLLPSGSRDE---PPPASQ 1893
>gi|139394646 iroquois homeobox protein 5 [Homo sapiens]
Length = 483
Score = 32.3 bits (72), Expect = 0.58
Identities = 31/89 (34%), Positives = 35/89 (39%), Gaps = 14/89 (15%)
Query: 239 PPTLGLLGSLYHALLQPVVAGGGP-GAAADRLLHGQALHDPPHPTQRGRHTAGG-LQAWP 296
PP+ G L +L P G P G AA RL A H P G H A G + P
Sbjct: 255 PPSEGRLDALQGP---PRTGGPSPAGPAAARLAEDPAPHYPAGAPAPGPHPAAGEVPPGP 311
Query: 297 G---------PPPQPQPLAWPLCMGLGEM 316
G PPP P LA P L E+
Sbjct: 312 GGPSVIHSPPPPPPPAVLAKPKLWSLAEI 340
>gi|85797660 limkain b1 [Homo sapiens]
Length = 1742
Score = 32.3 bits (72), Expect = 0.58
Identities = 15/28 (53%), Positives = 16/28 (57%), Gaps = 3/28 (10%)
Query: 293 QAWPGPPP---QPQPLAWPLCMGLGEMG 317
+ WP PP QP PLA PLC G G G
Sbjct: 288 KVWPNIPPPNTQPAPLAVPLCNGCGTKG 315
>gi|41281981 toll-like receptor adaptor molecule 1 [Homo sapiens]
Length = 712
Score = 32.0 bits (71), Expect = 0.75
Identities = 16/34 (47%), Positives = 17/34 (50%), Gaps = 3/34 (8%)
Query: 278 PPHPTQRGRHTAGGLQAWPG---PPPQPQPLAWP 308
PP PT G L AW PPP PQP A+P
Sbjct: 619 PPFPTWPGCPQPPPLHAWQAGTPPPPSPQPAAFP 652
>gi|119943102 CREB binding protein isoform b [Homo sapiens]
Length = 2404
Score = 31.6 bits (70), Expect = 0.98
Identities = 48/208 (23%), Positives = 69/208 (33%), Gaps = 48/208 (23%)
Query: 11 GLQMLLLALNCLRPSLSLGEWGSWMDASSQTQGAGGPAGVIGPWAPAPLRLGEAAPGTPT 70
G QM ++LN RP+ Q G P+ G W APL + PG P
Sbjct: 1954 GSQMAPVSLNVPRPN--------------QVSGPVMPSMPPGQWQQAPLPQQQPMPGLPR 1999
Query: 71 PVSVAHLLSPVATELVPYTPQITAWDLEGKVTATTFSLEQPRCVFDGLASASDTVWLVVA 130
PV + VA +P S++ PR + S S L+
Sbjct: 2000 PVISMQAQAAVAGPRMP-------------------SVQPPRSI-----SPSALQDLLRT 2035
Query: 131 FSNASRGFQNPETLADIPASPQLLTDGHYMTLPLSPDQLPCGDPMAGSGGAPVLRVGHDH 190
+ S Q + L + ++PQL+ P P G P ++
Sbjct: 2036 LKSPSSPQQQQQVLNILKSNPQLMAAFIKQRTAKYVANQPGMQPQPGLQSQPGMQ--PQP 2093
Query: 191 GCHQQPF--------CNAPLPGPGPYRE 210
G HQQP P PG P ++
Sbjct: 2094 GMHQQPSLQNLNAMQAGVPRPGVPPQQQ 2121
>gi|119943104 CREB binding protein isoform a [Homo sapiens]
Length = 2442
Score = 31.6 bits (70), Expect = 0.98
Identities = 48/208 (23%), Positives = 69/208 (33%), Gaps = 48/208 (23%)
Query: 11 GLQMLLLALNCLRPSLSLGEWGSWMDASSQTQGAGGPAGVIGPWAPAPLRLGEAAPGTPT 70
G QM ++LN RP+ Q G P+ G W APL + PG P
Sbjct: 1992 GSQMAPVSLNVPRPN--------------QVSGPVMPSMPPGQWQQAPLPQQQPMPGLPR 2037
Query: 71 PVSVAHLLSPVATELVPYTPQITAWDLEGKVTATTFSLEQPRCVFDGLASASDTVWLVVA 130
PV + VA +P S++ PR + S S L+
Sbjct: 2038 PVISMQAQAAVAGPRMP-------------------SVQPPRSI-----SPSALQDLLRT 2073
Query: 131 FSNASRGFQNPETLADIPASPQLLTDGHYMTLPLSPDQLPCGDPMAGSGGAPVLRVGHDH 190
+ S Q + L + ++PQL+ P P G P ++
Sbjct: 2074 LKSPSSPQQQQQVLNILKSNPQLMAAFIKQRTAKYVANQPGMQPQPGLQSQPGMQ--PQP 2131
Query: 191 GCHQQPF--------CNAPLPGPGPYRE 210
G HQQP P PG P ++
Sbjct: 2132 GMHQQPSLQNLNAMQAGVPRPGVPPQQQ 2159
>gi|5174711 T-box 1 isoform B [Homo sapiens]
Length = 372
Score = 31.6 bits (70), Expect = 0.98
Identities = 21/57 (36%), Positives = 24/57 (42%), Gaps = 3/57 (5%)
Query: 258 AGGGPGAAADRLLHGQALHDPPHPTQRGRHTAGGLQAWPGPPPQPQPLAWPLCMGLG 314
AGG PGAA+ +PP P R A PGPPP P A+P G
Sbjct: 24 AGGFPGAASPGA-DPYGPREPPPPPPRYDPCAAAAPGAPGPPPPPH--AYPFAPAAG 77
>gi|18104952 T-box 1 isoform C [Homo sapiens]
Length = 495
Score = 31.6 bits (70), Expect = 0.98
Identities = 21/57 (36%), Positives = 24/57 (42%), Gaps = 3/57 (5%)
Query: 258 AGGGPGAAADRLLHGQALHDPPHPTQRGRHTAGGLQAWPGPPPQPQPLAWPLCMGLG 314
AGG PGAA+ +PP P R A PGPPP P A+P G
Sbjct: 24 AGGFPGAASPGA-DPYGPREPPPPPPRYDPCAAAAPGAPGPPPPPH--AYPFAPAAG 77
>gi|18104950 T-box 1 isoform A [Homo sapiens]
Length = 398
Score = 31.6 bits (70), Expect = 0.98
Identities = 21/57 (36%), Positives = 24/57 (42%), Gaps = 3/57 (5%)
Query: 258 AGGGPGAAADRLLHGQALHDPPHPTQRGRHTAGGLQAWPGPPPQPQPLAWPLCMGLG 314
AGG PGAA+ +PP P R A PGPPP P A+P G
Sbjct: 24 AGGFPGAASPGA-DPYGPREPPPPPPRYDPCAAAAPGAPGPPPPPH--AYPFAPAAG 77
>gi|11968019 p53 target zinc finger protein isoform 1 [Homo sapiens]
Length = 289
Score = 31.6 bits (70), Expect = 0.98
Identities = 16/47 (34%), Positives = 26/47 (55%)
Query: 59 LRLGEAAPGTPTPVSVAHLLSPVATELVPYTPQITAWDLEGKVTATT 105
LR AA P P +++++ P AT +VP PQ+ ++ G+V T
Sbjct: 98 LRNYYAANSCPPPARMSNVVEPAATPVVPVPPQMGSFKPGGRVILAT 144
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.139 0.466
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,116,904
Number of Sequences: 37866
Number of extensions: 1175814
Number of successful extensions: 5844
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 115
Number of HSP's that attempted gapping in prelim test: 5617
Number of HSP's gapped (non-prelim): 349
length of query: 320
length of database: 18,247,518
effective HSP length: 102
effective length of query: 218
effective length of database: 14,385,186
effective search space: 3135970548
effective search space used: 3135970548
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.