Guide to the Human Genome
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Search of human proteins with 133908621

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|133908621 perforin 1 precursor [Homo sapiens]
         (555 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|133908621 perforin 1 precursor [Homo sapiens]                     1162   0.0  
gi|40254808 perforin 1 precursor [Homo sapiens]                      1162   0.0  
gi|189242612 complement component 6 precursor [Homo sapiens]           87   5e-17
gi|169636415 complement component 6 precursor [Homo sapiens]           87   5e-17
gi|4557389 complement component 8, alpha polypeptide precursor [...    67   6e-11
gi|45580688 complement component 7 precursor [Homo sapiens]            62   2e-09
gi|50582996 multiple C2 domains, transmembrane 1 isoform S [Homo...    47   5e-05
gi|205361109 multiple C2 domains, transmembrane 1 isoform L [Hom...    47   5e-05
gi|4759026 RAS protein activator like 1 [Homo sapiens]                 46   1e-04
gi|4502511 complement component 9 precursor [Homo sapiens]             42   0.001
gi|227496489 multiple C2 domains, transmembrane 2 isoform 2 [Hom...    42   0.002
gi|227496440 multiple C2 domains, transmembrane 2 isoform 1 [Hom...    42   0.002
gi|103472031 family with sequence similarity 62 (C2 domain conta...    41   0.003
gi|116174754 phospholipase A2, group IVD [Homo sapiens]                40   0.006
gi|122937514 unc-13 homolog C [Homo sapiens]                           40   0.006
gi|122937247 unc-13 homolog A [Homo sapiens]                           40   0.006
gi|4557391 complement component 8, beta polypeptide preproprotei...    39   0.016
gi|110611226 UNC13 (C. elegans)-like [Homo sapiens]                    38   0.021
gi|34740331 otoferlin isoform a [Homo sapiens]                         37   0.036
gi|14149680 extended synaptotagmin-like protein 1 [Homo sapiens]       37   0.047
gi|119120884 fer-1-like 6 [Homo sapiens]                               36   0.11 
gi|27477109 itchy homolog E3 ubiquitin protein ligase [Homo sapi...    34   0.40 
gi|227496504 multiple C2 domains, transmembrane 2 isoform 3 [Hom...    33   0.52 
gi|111118994 brain-specific angiogenesis inhibitor 1 precursor [...    33   0.89 
gi|19718759 myoferlin isoform b [Homo sapiens]                         33   0.89 
gi|7305053 myoferlin isoform a [Homo sapiens]                          33   0.89 
gi|148529000 deleted in bladder cancer 1 [Homo sapiens]                32   1.5  
gi|219804203 rabphilin 3A homolog isoform 1 [Homo sapiens]             32   1.5  
gi|45267837 rabphilin 3A homolog isoform 2 [Homo sapiens]              32   1.5  
gi|134031945 SCO-spondin [Homo sapiens]                                32   2.0  

>gi|133908621 perforin 1 precursor [Homo sapiens]
          Length = 555

 Score = 1162 bits (3007), Expect = 0.0
 Identities = 555/555 (100%), Positives = 555/555 (100%)

Query: 1   MAARLLLLGILLLLLPLPVPAPCHTAARSECKRSHKFVPGAWLAGEGVDVTSLRRSGSFP 60
           MAARLLLLGILLLLLPLPVPAPCHTAARSECKRSHKFVPGAWLAGEGVDVTSLRRSGSFP
Sbjct: 1   MAARLLLLGILLLLLPLPVPAPCHTAARSECKRSHKFVPGAWLAGEGVDVTSLRRSGSFP 60

Query: 61  VDTQRFLRPDGTCTLCENALQEGTLQRLPLALTNWRAQGSGCQRHVTRAKVSSTEAVARD 120
           VDTQRFLRPDGTCTLCENALQEGTLQRLPLALTNWRAQGSGCQRHVTRAKVSSTEAVARD
Sbjct: 61  VDTQRFLRPDGTCTLCENALQEGTLQRLPLALTNWRAQGSGCQRHVTRAKVSSTEAVARD 120

Query: 121 AARSIRNDWKVGLDVTPKPTSNVHVSVAGSHSQAANFAAQKTHQDQYSFSTDTVECRFYS 180
           AARSIRNDWKVGLDVTPKPTSNVHVSVAGSHSQAANFAAQKTHQDQYSFSTDTVECRFYS
Sbjct: 121 AARSIRNDWKVGLDVTPKPTSNVHVSVAGSHSQAANFAAQKTHQDQYSFSTDTVECRFYS 180

Query: 181 FHVVHTPPLHPDFKRALGDLPHHFNASTQPAYLRLISNYGTHFIRAVELGGRISALTALR 240
           FHVVHTPPLHPDFKRALGDLPHHFNASTQPAYLRLISNYGTHFIRAVELGGRISALTALR
Sbjct: 181 FHVVHTPPLHPDFKRALGDLPHHFNASTQPAYLRLISNYGTHFIRAVELGGRISALTALR 240

Query: 241 TCELALEGLTDNEVEDCLTVEAQVNIGIHGSISAEAKACEEKKKKHKMTASFHQTYRERH 300
           TCELALEGLTDNEVEDCLTVEAQVNIGIHGSISAEAKACEEKKKKHKMTASFHQTYRERH
Sbjct: 241 TCELALEGLTDNEVEDCLTVEAQVNIGIHGSISAEAKACEEKKKKHKMTASFHQTYRERH 300

Query: 301 SEVVGGHHTSINDLLFGIQAGPEQYSAWVNSLPGSPGLVDYTLEPLHVLLDSQDPRREAL 360
           SEVVGGHHTSINDLLFGIQAGPEQYSAWVNSLPGSPGLVDYTLEPLHVLLDSQDPRREAL
Sbjct: 301 SEVVGGHHTSINDLLFGIQAGPEQYSAWVNSLPGSPGLVDYTLEPLHVLLDSQDPRREAL 360

Query: 361 RRALSQYLTDRARWRDCSRPCPPGRQKSPRDPCQCVCHGSAVTTQDCCPRQRGLAQLEVT 420
           RRALSQYLTDRARWRDCSRPCPPGRQKSPRDPCQCVCHGSAVTTQDCCPRQRGLAQLEVT
Sbjct: 361 RRALSQYLTDRARWRDCSRPCPPGRQKSPRDPCQCVCHGSAVTTQDCCPRQRGLAQLEVT 420

Query: 421 FIQAWGLWGDWFTATDAYVKLFFGGQELRTSTVWDNNNPIWSVRLDFGDVLLATGGPLRL 480
           FIQAWGLWGDWFTATDAYVKLFFGGQELRTSTVWDNNNPIWSVRLDFGDVLLATGGPLRL
Sbjct: 421 FIQAWGLWGDWFTATDAYVKLFFGGQELRTSTVWDNNNPIWSVRLDFGDVLLATGGPLRL 480

Query: 481 QVWDQDSGRDDDLLGTCDQAPKSGSHEVRCNLNHGHLKFRYHARCLPHLGGGTCLDYVPQ 540
           QVWDQDSGRDDDLLGTCDQAPKSGSHEVRCNLNHGHLKFRYHARCLPHLGGGTCLDYVPQ
Sbjct: 481 QVWDQDSGRDDDLLGTCDQAPKSGSHEVRCNLNHGHLKFRYHARCLPHLGGGTCLDYVPQ 540

Query: 541 MLLGEPPGNRSGAVW 555
           MLLGEPPGNRSGAVW
Sbjct: 541 MLLGEPPGNRSGAVW 555


>gi|40254808 perforin 1 precursor [Homo sapiens]
          Length = 555

 Score = 1162 bits (3007), Expect = 0.0
 Identities = 555/555 (100%), Positives = 555/555 (100%)

Query: 1   MAARLLLLGILLLLLPLPVPAPCHTAARSECKRSHKFVPGAWLAGEGVDVTSLRRSGSFP 60
           MAARLLLLGILLLLLPLPVPAPCHTAARSECKRSHKFVPGAWLAGEGVDVTSLRRSGSFP
Sbjct: 1   MAARLLLLGILLLLLPLPVPAPCHTAARSECKRSHKFVPGAWLAGEGVDVTSLRRSGSFP 60

Query: 61  VDTQRFLRPDGTCTLCENALQEGTLQRLPLALTNWRAQGSGCQRHVTRAKVSSTEAVARD 120
           VDTQRFLRPDGTCTLCENALQEGTLQRLPLALTNWRAQGSGCQRHVTRAKVSSTEAVARD
Sbjct: 61  VDTQRFLRPDGTCTLCENALQEGTLQRLPLALTNWRAQGSGCQRHVTRAKVSSTEAVARD 120

Query: 121 AARSIRNDWKVGLDVTPKPTSNVHVSVAGSHSQAANFAAQKTHQDQYSFSTDTVECRFYS 180
           AARSIRNDWKVGLDVTPKPTSNVHVSVAGSHSQAANFAAQKTHQDQYSFSTDTVECRFYS
Sbjct: 121 AARSIRNDWKVGLDVTPKPTSNVHVSVAGSHSQAANFAAQKTHQDQYSFSTDTVECRFYS 180

Query: 181 FHVVHTPPLHPDFKRALGDLPHHFNASTQPAYLRLISNYGTHFIRAVELGGRISALTALR 240
           FHVVHTPPLHPDFKRALGDLPHHFNASTQPAYLRLISNYGTHFIRAVELGGRISALTALR
Sbjct: 181 FHVVHTPPLHPDFKRALGDLPHHFNASTQPAYLRLISNYGTHFIRAVELGGRISALTALR 240

Query: 241 TCELALEGLTDNEVEDCLTVEAQVNIGIHGSISAEAKACEEKKKKHKMTASFHQTYRERH 300
           TCELALEGLTDNEVEDCLTVEAQVNIGIHGSISAEAKACEEKKKKHKMTASFHQTYRERH
Sbjct: 241 TCELALEGLTDNEVEDCLTVEAQVNIGIHGSISAEAKACEEKKKKHKMTASFHQTYRERH 300

Query: 301 SEVVGGHHTSINDLLFGIQAGPEQYSAWVNSLPGSPGLVDYTLEPLHVLLDSQDPRREAL 360
           SEVVGGHHTSINDLLFGIQAGPEQYSAWVNSLPGSPGLVDYTLEPLHVLLDSQDPRREAL
Sbjct: 301 SEVVGGHHTSINDLLFGIQAGPEQYSAWVNSLPGSPGLVDYTLEPLHVLLDSQDPRREAL 360

Query: 361 RRALSQYLTDRARWRDCSRPCPPGRQKSPRDPCQCVCHGSAVTTQDCCPRQRGLAQLEVT 420
           RRALSQYLTDRARWRDCSRPCPPGRQKSPRDPCQCVCHGSAVTTQDCCPRQRGLAQLEVT
Sbjct: 361 RRALSQYLTDRARWRDCSRPCPPGRQKSPRDPCQCVCHGSAVTTQDCCPRQRGLAQLEVT 420

Query: 421 FIQAWGLWGDWFTATDAYVKLFFGGQELRTSTVWDNNNPIWSVRLDFGDVLLATGGPLRL 480
           FIQAWGLWGDWFTATDAYVKLFFGGQELRTSTVWDNNNPIWSVRLDFGDVLLATGGPLRL
Sbjct: 421 FIQAWGLWGDWFTATDAYVKLFFGGQELRTSTVWDNNNPIWSVRLDFGDVLLATGGPLRL 480

Query: 481 QVWDQDSGRDDDLLGTCDQAPKSGSHEVRCNLNHGHLKFRYHARCLPHLGGGTCLDYVPQ 540
           QVWDQDSGRDDDLLGTCDQAPKSGSHEVRCNLNHGHLKFRYHARCLPHLGGGTCLDYVPQ
Sbjct: 481 QVWDQDSGRDDDLLGTCDQAPKSGSHEVRCNLNHGHLKFRYHARCLPHLGGGTCLDYVPQ 540

Query: 541 MLLGEPPGNRSGAVW 555
           MLLGEPPGNRSGAVW
Sbjct: 541 MLLGEPPGNRSGAVW 555


>gi|189242612 complement component 6 precursor [Homo sapiens]
          Length = 934

 Score = 86.7 bits (213), Expect = 5e-17
 Identities = 81/299 (27%), Positives = 126/299 (42%), Gaps = 21/299 (7%)

Query: 150 SHSQAANFAAQKTHQDQYSFSTDTVECRFYSFHVVHTPPLHPD--FKRALGDLPHHFNAS 207
           +H+ A   A Q +H+   SF       +  +F       LH    F +AL  LP  +N++
Sbjct: 294 NHNSAFKQAIQASHKKDSSFIRIHKVMKVLNF-TTKAKDLHLSDVFLKALNHLPLEYNSA 352

Query: 208 TQPAYLRLISNYGTHFIRAVELGGRISALTALRTCELALEGLTDNEVEDCLTVEAQVNIG 267
               Y R+  ++GTH+  +  LGG    L    + EL   GLT+ E + C+ +E +  + 
Sbjct: 353 L---YSRIFDDFGTHYFTSGSLGGVYDLLYQFSSEELKNSGLTEEEAKHCVRIETKKRVL 409

Query: 268 IHGSISAEAKACEEKKKKHKMTASFHQTYRERHSEVVGGHHTSINDLLFGI-QAGPEQ-- 324
                  E + C   K   K   SF Q   +  S + GG       L +    +G E+  
Sbjct: 410 FAKKTKVEHR-CTTNKLSEKHEGSFIQGAEKSISLIRGGRSEYGAALAWEKGSSGLEEKT 468

Query: 325 YSAWVNSLPGSPGLVDYTLEPLHVL---LDSQDPRREALRRALSQYLTDRARWRDCS-RP 380
           +S W+ S+  +P ++D+ L P+  L   +     +R  LR+AL +Y    A++  C   P
Sbjct: 469 FSEWLESVKENPAVIDFELAPIVDLVRNIPCAVTKRNNLRKALQEY---AAKFDPCQCAP 525

Query: 381 CP-PGRQKSPRDPCQCVCHGSAVTTQDCCPRQRGLAQLEVTFIQAWGLWGDWFTATDAY 438
           CP  GR       C CVC     T  + C +Q    +      Q WG W  W T    Y
Sbjct: 526 CPNNGRPTLSGTECLCVCQSG--TYGENCEKQSPDYKSNAVDGQ-WGCWSSWSTCDATY 581


>gi|169636415 complement component 6 precursor [Homo sapiens]
          Length = 934

 Score = 86.7 bits (213), Expect = 5e-17
 Identities = 81/299 (27%), Positives = 126/299 (42%), Gaps = 21/299 (7%)

Query: 150 SHSQAANFAAQKTHQDQYSFSTDTVECRFYSFHVVHTPPLHPD--FKRALGDLPHHFNAS 207
           +H+ A   A Q +H+   SF       +  +F       LH    F +AL  LP  +N++
Sbjct: 294 NHNSAFKQAIQASHKKDSSFIRIHKVMKVLNF-TTKAKDLHLSDVFLKALNHLPLEYNSA 352

Query: 208 TQPAYLRLISNYGTHFIRAVELGGRISALTALRTCELALEGLTDNEVEDCLTVEAQVNIG 267
               Y R+  ++GTH+  +  LGG    L    + EL   GLT+ E + C+ +E +  + 
Sbjct: 353 L---YSRIFDDFGTHYFTSGSLGGVYDLLYQFSSEELKNSGLTEEEAKHCVRIETKKRVL 409

Query: 268 IHGSISAEAKACEEKKKKHKMTASFHQTYRERHSEVVGGHHTSINDLLFGI-QAGPEQ-- 324
                  E + C   K   K   SF Q   +  S + GG       L +    +G E+  
Sbjct: 410 FAKKTKVEHR-CTTNKLSEKHEGSFIQGAEKSISLIRGGRSEYGAALAWEKGSSGLEEKT 468

Query: 325 YSAWVNSLPGSPGLVDYTLEPLHVL---LDSQDPRREALRRALSQYLTDRARWRDCS-RP 380
           +S W+ S+  +P ++D+ L P+  L   +     +R  LR+AL +Y    A++  C   P
Sbjct: 469 FSEWLESVKENPAVIDFELAPIVDLVRNIPCAVTKRNNLRKALQEY---AAKFDPCQCAP 525

Query: 381 CP-PGRQKSPRDPCQCVCHGSAVTTQDCCPRQRGLAQLEVTFIQAWGLWGDWFTATDAY 438
           CP  GR       C CVC     T  + C +Q    +      Q WG W  W T    Y
Sbjct: 526 CPNNGRPTLSGTECLCVCQSG--TYGENCEKQSPDYKSNAVDGQ-WGCWSSWSTCDATY 581


>gi|4557389 complement component 8, alpha polypeptide precursor
           [Homo sapiens]
          Length = 584

 Score = 66.6 bits (161), Expect = 6e-11
 Identities = 68/305 (22%), Positives = 121/305 (39%), Gaps = 37/305 (12%)

Query: 145 VSVAGSHSQAANFAAQKTHQDQYSFSTDTVECRFYSFHVVHTPP---LHPDFKRALGDLP 201
           V V  SHSQ  +F  +    ++  F    +  +  + H         L     ++L +LP
Sbjct: 263 VGVGVSHSQDTSFLNELNKYNEKKFIFTRIFTKVQTAHFKMRKDDIMLDEGMLQSLMELP 322

Query: 202 HHFNASTQPAYLRLISNYGTHFIRAVELGGRISALTALRTCELALEGLTDNEVEDC---- 257
             +N      Y + I++YGTH+I +  +GG    +  +   ++   G+T  ++  C    
Sbjct: 323 DQYNYGM---YAKFINDYGTHYITSGSMGGIYEYILVIDKAKMESLGITSRDITTCFGGS 379

Query: 258 LTVEAQVNIGIHGSISAEAKACEEKKKKHKMTASFHQTYRERHSEVVGGHHTSINDLLFG 317
           L ++ +  I + G +S +          H       +T R R +  V    + +     G
Sbjct: 380 LGIQYEDKINVGGGLSGD----------HCKKFGGGKTERARKAMAVEDIISRVRGGSSG 429

Query: 318 IQAGPEQ------YSAWVNSLPGSPGLVDYTLEPLHVL-----LDSQDPRREALRRALSQ 366
              G  Q      Y +W  SL  +P ++D+ ++P+H +     L   + +R+ LRRAL Q
Sbjct: 430 WSGGLAQNRSTITYRSWGRSLKYNPVVIDFEMQPIHEVLRHTSLGPLEAKRQNLRRALDQ 489

Query: 367 YLTDRARWRDCSRPCPPGRQKSPRDPCQCVCHGSAVTTQDCCPRQRGLAQLEVTFIQAWG 426
           YL +    R C      G        C+C C   ++    C   Q   A+ +     +W 
Sbjct: 490 YLMEFNACR-CGPCFNNGVPILEGTSCRCQCRLGSLGAA-CEQTQTEGAKAD----GSWS 543

Query: 427 LWGDW 431
            W  W
Sbjct: 544 CWSSW 548


>gi|45580688 complement component 7 precursor [Homo sapiens]
          Length = 843

 Score = 61.6 bits (148), Expect = 2e-09
 Identities = 59/247 (23%), Positives = 96/247 (38%), Gaps = 21/247 (8%)

Query: 193 FKRALGDLPHHFNASTQPAYLRLISNYGTHFIRAVELGGRISALTALRTCELALEGLTDN 252
           F + L  LP  ++ S   AY RLI  YGTH++++  LGG    L  + + +L        
Sbjct: 276 FWKELSHLPSLYDYS---AYRRLIDQYGTHYLQSGSLGGEYRVLFYVDSEKLKQNDFNSV 332

Query: 253 EVEDCLTVEAQVNIGIHGSISAEAKACEEKKKKHKMTASFHQTYRERHSEVVGGHHTSIN 312
           E + C       + G H  +   +  C+E +   K  +            + GG    I+
Sbjct: 333 EEKKC------KSSGWHFVVKFSSHGCKELENALKAASGTQNNVLRGEPFIRGGGAGFIS 386

Query: 313 DLLFGIQAGP----EQYSAWVNSLPGSPGLVDYTLEPLHVLLDS---QDPRREALRRALS 365
            L +     P     +YSAW  S+   P ++   L PL+ L+        ++  L+ AL 
Sbjct: 387 GLSYLELDNPAGNKRRYSAWAESVTNLPQVIKQKLTPLYELVKEVPCASVKKLYLKWALE 446

Query: 366 QYLTDRARWRDC-SRPCPPGRQKSPRDPCQCVCHGSAVTTQDCCPRQRGLAQLEVTFIQA 424
           +YL +   +  C  RPC  G   +  +   C+CH    T    C +   +          
Sbjct: 447 EYLDE---FDPCHCRPCQNGGLATV-EGTHCLCHCKPYTFGAACEQGVLVGNQAGGVDGG 502

Query: 425 WGLWGDW 431
           W  W  W
Sbjct: 503 WSCWSSW 509


>gi|50582996 multiple C2 domains, transmembrane 1 isoform S [Homo
           sapiens]
          Length = 778

 Score = 47.0 bits (110), Expect = 5e-05
 Identities = 39/153 (25%), Positives = 64/153 (41%), Gaps = 12/153 (7%)

Query: 374 WRDCSRPCPPG----RQKSPRDPCQCVCHGSAVTTQDCCPRQRGLAQ--LEVTFIQAWGL 427
           WR C RP  P     R +     C+ V   +         R+  L +  + +T I+   L
Sbjct: 202 WRTCGRPALPVLGFCRAELQNPYCKNVQFQTQSLRLSDLHRKSHLWRGIVSITLIEGRDL 261

Query: 428 WG-DWFTATDAYVKLFFGGQELRTSTVWDNNNPIWSVRLDFGDVLLATGGPLRLQVWDQD 486
              D    +D YVK   G Q+ ++  +    NP W  + DF  +    GG + +  WD+D
Sbjct: 262 KAMDSNGLSDPYVKFRLGHQKYKSKIMPKTLNPQWREQFDF-HLYEERGGVIDITAWDKD 320

Query: 487 SGRDDDLLGTC----DQAPKSGSHEVRCNLNHG 515
           +G+ DD +G C        +  +H++   L  G
Sbjct: 321 AGKRDDFIGRCQVDLSALSREQTHKLELQLEEG 353



 Score = 40.8 bits (94), Expect = 0.003
 Identities = 27/86 (31%), Positives = 45/86 (52%), Gaps = 4/86 (4%)

Query: 413 GLAQLEVTFIQAWGLWG-DWFTATDAYVKLFFGGQEL-RTSTVWDNNNPIWSVRLDFGDV 470
           G+ QL++T  +   L   D    +D YVK   GG+E+ R+  +  N NP+W  +     +
Sbjct: 38  GMYQLDITLRRGQSLAARDRGGTSDPYVKFKIGGKEVFRSKIIHKNLNPVWEEKACI--L 95

Query: 471 LLATGGPLRLQVWDQDSGRDDDLLGT 496
           +     PL ++V+D D G  DD +G+
Sbjct: 96  VDHLREPLYIKVFDYDFGLQDDFMGS 121



 Score = 33.5 bits (75), Expect = 0.52
 Identities = 25/80 (31%), Positives = 36/80 (45%), Gaps = 3/80 (3%)

Query: 417 LEVTFIQAWGLWGDWFTA-TDAYVKLFFGGQELRTSTVWDNNNPIWSVRLDFGDVLLATG 475
           L+V  I+A GL     T  +D +  +      L T TV+ N NP W+    F   +    
Sbjct: 407 LQVKVIRAEGLMAADVTGKSDPFCVVELNNDRLLTHTVYKNLNPEWNKVFTFN--IKDIH 464

Query: 476 GPLRLQVWDQDSGRDDDLLG 495
             L + V+D+D  R  D LG
Sbjct: 465 SVLEVTVYDEDRDRSADFLG 484


>gi|205361109 multiple C2 domains, transmembrane 1 isoform L [Homo
           sapiens]
          Length = 999

 Score = 47.0 bits (110), Expect = 5e-05
 Identities = 39/153 (25%), Positives = 64/153 (41%), Gaps = 12/153 (7%)

Query: 374 WRDCSRPCPPG----RQKSPRDPCQCVCHGSAVTTQDCCPRQRGLAQ--LEVTFIQAWGL 427
           WR C RP  P     R +     C+ V   +         R+  L +  + +T I+   L
Sbjct: 423 WRTCGRPALPVLGFCRAELQNPYCKNVQFQTQSLRLSDLHRKSHLWRGIVSITLIEGRDL 482

Query: 428 WG-DWFTATDAYVKLFFGGQELRTSTVWDNNNPIWSVRLDFGDVLLATGGPLRLQVWDQD 486
              D    +D YVK   G Q+ ++  +    NP W  + DF  +    GG + +  WD+D
Sbjct: 483 KAMDSNGLSDPYVKFRLGHQKYKSKIMPKTLNPQWREQFDF-HLYEERGGVIDITAWDKD 541

Query: 487 SGRDDDLLGTC----DQAPKSGSHEVRCNLNHG 515
           +G+ DD +G C        +  +H++   L  G
Sbjct: 542 AGKRDDFIGRCQVDLSALSREQTHKLELQLEEG 574



 Score = 40.8 bits (94), Expect = 0.003
 Identities = 27/86 (31%), Positives = 45/86 (52%), Gaps = 4/86 (4%)

Query: 413 GLAQLEVTFIQAWGLWG-DWFTATDAYVKLFFGGQEL-RTSTVWDNNNPIWSVRLDFGDV 470
           G+ QL++T  +   L   D    +D YVK   GG+E+ R+  +  N NP+W  +     +
Sbjct: 259 GMYQLDITLRRGQSLAARDRGGTSDPYVKFKIGGKEVFRSKIIHKNLNPVWEEKACI--L 316

Query: 471 LLATGGPLRLQVWDQDSGRDDDLLGT 496
           +     PL ++V+D D G  DD +G+
Sbjct: 317 VDHLREPLYIKVFDYDFGLQDDFMGS 342



 Score = 33.5 bits (75), Expect = 0.52
 Identities = 25/80 (31%), Positives = 36/80 (45%), Gaps = 3/80 (3%)

Query: 417 LEVTFIQAWGLWGDWFTA-TDAYVKLFFGGQELRTSTVWDNNNPIWSVRLDFGDVLLATG 475
           L+V  I+A GL     T  +D +  +      L T TV+ N NP W+    F   +    
Sbjct: 628 LQVKVIRAEGLMAADVTGKSDPFCVVELNNDRLLTHTVYKNLNPEWNKVFTFN--IKDIH 685

Query: 476 GPLRLQVWDQDSGRDDDLLG 495
             L + V+D+D  R  D LG
Sbjct: 686 SVLEVTVYDEDRDRSADFLG 705


>gi|4759026 RAS protein activator like 1 [Homo sapiens]
          Length = 804

 Score = 45.8 bits (107), Expect = 1e-04
 Identities = 23/69 (33%), Positives = 39/69 (56%), Gaps = 1/69 (1%)

Query: 435 TDAYVKLFFGGQELRTSTVWDNNNPIWSVRLDFGDVLLATGGPLRLQVWDQDSGRDDDLL 494
           +D + ++F+G Q L TST+     P W   L+  ++  A   PLR+++WD D    +D L
Sbjct: 154 SDPFARVFWGSQSLETSTIKKTRFPHWDEVLELREMPGAPS-PLRVELWDWDMVGKNDFL 212

Query: 495 GTCDQAPKS 503
           G  + +PK+
Sbjct: 213 GMVEFSPKT 221


>gi|4502511 complement component 9 precursor [Homo sapiens]
          Length = 559

 Score = 42.4 bits (98), Expect = 0.001
 Identities = 42/198 (21%), Positives = 78/198 (39%), Gaps = 14/198 (7%)

Query: 212 YLRLISNYGTHFIRAVELGGRISALTALRTCELALEGLTDNEVEDCLTVEAQVNIGIHG- 270
           Y   +  YGTH+  +  LGG    +  L    +  +G+   +++ CL     V++     
Sbjct: 335 YFAFLETYGTHYSSSGSLGGLYELIYVLDKASMKRKGVELKDIKRCLGYHLDVSLAFSEI 394

Query: 271 SISAEAKA--CEEKKKKHKMTASFHQTYRERHSEVVGGHHTSI----NDLLFGIQAGPEQ 324
           S+ AE     C ++ +   +  +      +  S + GG           LL G       
Sbjct: 395 SVGAEFNKDDCVKRGEGRAVNITSENLIDDVVSLIRGGTRKYAFELKEKLLRGTVIDVTD 454

Query: 325 YSAWVNSLPGSPGLVDYTLEPLH----VLLDSQDPRREALRRALSQYLTDRARWRDCSRP 380
           +  W +S+  +P L+   L P++    V + +   +++ L RA+  Y+ + +  R C   
Sbjct: 455 FVNWASSINDAPVLISQKLSPIYNLVPVKMKNAHLKKQNLERAIEDYINEFS-VRKC-HT 512

Query: 381 CPPGRQKSPRD-PCQCVC 397
           C  G      D  C C C
Sbjct: 513 CQNGGTVILMDGKCLCAC 530


>gi|227496489 multiple C2 domains, transmembrane 2 isoform 2 [Homo
           sapiens]
          Length = 823

 Score = 41.6 bits (96), Expect = 0.002
 Identities = 22/81 (27%), Positives = 43/81 (53%), Gaps = 3/81 (3%)

Query: 417 LEVTFIQAWGLWGDWFTATDAYVKLFFGGQELRTSTVWDNNNPIWSVRLDFGDVLLATGG 476
           + +T ++   + G   + T+ +V+L  G Q  ++ T+  + NP W  + DF        G
Sbjct: 358 ISITLLEGKNVSGG--SMTEMFVQLKLGDQRYKSKTLCKSANPQWQEQFDF-HYFSDRMG 414

Query: 477 PLRLQVWDQDSGRDDDLLGTC 497
            L ++VW +D+ + ++ LGTC
Sbjct: 415 ILDIEVWGKDNKKHEERLGTC 435



 Score = 33.5 bits (75), Expect = 0.52
 Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 2/69 (2%)

Query: 427 LWGDWFTATDAYVKLFFGGQELRTSTVWDNNNPIWSVRLDFGDVLLATGGPLRLQVWDQD 486
           L  D+   +D +  L  G   L+T TV+ N NP W+    F   +      L + V+D+D
Sbjct: 522 LAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTF--PIKDIHDVLEVTVFDED 579

Query: 487 SGRDDDLLG 495
             +  D LG
Sbjct: 580 GDKPPDFLG 588


>gi|227496440 multiple C2 domains, transmembrane 2 isoform 1 [Homo
           sapiens]
          Length = 878

 Score = 41.6 bits (96), Expect = 0.002
 Identities = 22/81 (27%), Positives = 43/81 (53%), Gaps = 3/81 (3%)

Query: 417 LEVTFIQAWGLWGDWFTATDAYVKLFFGGQELRTSTVWDNNNPIWSVRLDFGDVLLATGG 476
           + +T ++   + G   + T+ +V+L  G Q  ++ T+  + NP W  + DF        G
Sbjct: 358 ISITLLEGKNVSGG--SMTEMFVQLKLGDQRYKSKTLCKSANPQWQEQFDF-HYFSDRMG 414

Query: 477 PLRLQVWDQDSGRDDDLLGTC 497
            L ++VW +D+ + ++ LGTC
Sbjct: 415 ILDIEVWGKDNKKHEERLGTC 435



 Score = 33.5 bits (75), Expect = 0.52
 Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 2/69 (2%)

Query: 427 LWGDWFTATDAYVKLFFGGQELRTSTVWDNNNPIWSVRLDFGDVLLATGGPLRLQVWDQD 486
           L  D+   +D +  L  G   L+T TV+ N NP W+    F   +      L + V+D+D
Sbjct: 522 LAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTF--PIKDIHDVLEVTVFDED 579

Query: 487 SGRDDDLLG 495
             +  D LG
Sbjct: 580 GDKPPDFLG 588


>gi|103472031 family with sequence similarity 62 (C2 domain
           containing), member C [Homo sapiens]
          Length = 886

 Score = 40.8 bits (94), Expect = 0.003
 Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 1/59 (1%)

Query: 435 TDAYVKLFFGGQELRTSTVWDNNNPIWSVRLDFGDVLLATGGPLRLQVWDQDSGRDDDL 493
           +D Y K+  G Q  R+ T++ N NP W+   +F  V    G  L + ++D+D+ RDD L
Sbjct: 331 SDPYAKVSIGLQHFRSRTIYRNLNPTWNEVFEF-MVYEVPGQDLEVDLYDEDTDRDDFL 388


>gi|116174754 phospholipase A2, group IVD [Homo sapiens]
          Length = 818

 Score = 40.0 bits (92), Expect = 0.006
 Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 5/82 (6%)

Query: 416 QLEVTFIQAWGL-WGDWFTATDAYVKLFFG---GQELRTSTVWDNNNPIWSVRLDFGDVL 471
           QL V  ++A  L W D  +  D YV L      G + +T T+ D ++P+W+    F  + 
Sbjct: 23  QLTVRVLEARNLRWADLLSEADPYVILQLSTAPGMKFKTKTLTDTSHPVWNEAFRFL-IQ 81

Query: 472 LATGGPLRLQVWDQDSGRDDDL 493
                 L L ++D+DS  +DD+
Sbjct: 82  SQVKNVLELSIYDEDSVTEDDI 103


>gi|122937514 unc-13 homolog C [Homo sapiens]
          Length = 2214

 Score = 40.0 bits (92), Expect = 0.006
 Identities = 27/94 (28%), Positives = 47/94 (50%), Gaps = 7/94 (7%)

Query: 415  AQLEVTFIQAWGLWG-DWFTATDAYVKLFFGGQELRTSTVWDNNNPIWSVRLDFGDVLLA 473
            A++ +T + A GL   D   ++D YV +  G  + RT T++ N NP+W  +  F      
Sbjct: 1220 AKITITVVSAQGLQAKDKTGSSDPYVTVQVGKNKRRTKTIFGNLNPVWDEKFYF--ECHN 1277

Query: 474  TGGPLRLQVWDQDSGRDDDLLGTCDQAPKSGSHE 507
            +   ++++VWD+    DDD+     Q  K  S +
Sbjct: 1278 STDRIKVRVWDE----DDDIKSRVKQHFKKESDD 1307


>gi|122937247 unc-13 homolog A [Homo sapiens]
          Length = 1791

 Score = 40.0 bits (92), Expect = 0.006
 Identities = 27/94 (28%), Positives = 46/94 (48%), Gaps = 7/94 (7%)

Query: 415 AQLEVTFIQAWGLWG-DWFTATDAYVKLFFGGQELRTSTVWDNNNPIWSVRLDFGDVLLA 473
           A++ +T + A GL   D   ++D YV +  G  + RT T++ N NP+W     F      
Sbjct: 764 AKISITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTKTIYGNLNPVWEENFHF--ECHN 821

Query: 474 TGGPLRLQVWDQDSGRDDDLLGTCDQAPKSGSHE 507
           +   ++++VWD+    DDD+     Q  K  S +
Sbjct: 822 SSDRIKVRVWDE----DDDIKSRVKQRFKRESDD 851


>gi|4557391 complement component 8, beta polypeptide preproprotein
           [Homo sapiens]
          Length = 591

 Score = 38.5 bits (88), Expect = 0.016
 Identities = 54/265 (20%), Positives = 99/265 (37%), Gaps = 45/265 (16%)

Query: 189 LHPDFKRALGDLPHHFNASTQPAYLRLISNYGTHFIRAVELGGRISALTALRTCELALEG 248
           LH +F + +  LP  ++      Y  L  ++GTH+I    LGG       +    +    
Sbjct: 313 LHYEFLQRVKRLPLEYSYGE---YRDLFRDFGTHYITEAVLGGIYEYTLVMNKEAMERGD 369

Query: 249 LTDNEVEDC---------LTVEAQVNIGIH-GSISAEAKACEEKKKKHKMTASFHQTYRE 298
            T N V  C            E  V++G+  G         +++ K+  M        R 
Sbjct: 370 YTLNNVHACAKNDFKIGGAIEEVYVSLGVSVGKCRGILNEIKDRNKRDTMVEDLVVLVR- 428

Query: 299 RHSEVVGGHHTSINDLLFGIQAGPEQYSAWVNSLPGSPGLVDYTLEPLHVLLDSQD---- 354
                 GG    I  L +      +    W +++  +P ++   +EPL+ L+ + D    
Sbjct: 429 ------GGASEHITTLAYQELPTADLMQEWGDAVQYNPAIIKVKVEPLYELVTATDFAYS 482

Query: 355 -PRREALRRALSQYLTDRARWRDCSRPCP-PGRQKSPRDPCQCVCHGSAVTTQDCCPRQR 412
              R+ +++AL ++  + +    C+ PC   G        C C+C   +          +
Sbjct: 483 STVRQNMKQALEEFQKEVSSCH-CA-PCQGNGVPVLKGSRCDCICPVGS----------Q 530

Query: 413 GLAQLEVTFIQ------AWGLWGDW 431
           GLA  EV++ +       W  W +W
Sbjct: 531 GLA-CEVSYRKNTPIDGKWNCWSNW 554


>gi|110611226 UNC13 (C. elegans)-like [Homo sapiens]
          Length = 1591

 Score = 38.1 bits (87), Expect = 0.021
 Identities = 26/94 (27%), Positives = 46/94 (48%), Gaps = 7/94 (7%)

Query: 415 AQLEVTFIQAWGLWG-DWFTATDAYVKLFFGGQELRTSTVWDNNNPIWSVRLDFGDVLLA 473
           A++ +T + A GL   D   ++D YV +     + RT T++ N NP+W  +  F      
Sbjct: 600 AKITITVVCAQGLQAKDKTGSSDPYVTVQVSKTKKRTKTIFGNLNPVWEEKFHF--ECHN 657

Query: 474 TGGPLRLQVWDQDSGRDDDLLGTCDQAPKSGSHE 507
           +   ++++VWD+    DDD+     Q  K  S +
Sbjct: 658 SSDRIKVRVWDE----DDDIKSRVKQRLKRESDD 687


>gi|34740331 otoferlin isoform a [Homo sapiens]
          Length = 1997

 Score = 37.4 bits (85), Expect = 0.036
 Identities = 17/55 (30%), Positives = 31/55 (56%)

Query: 436 DAYVKLFFGGQELRTSTVWDNNNPIWSVRLDFGDVLLATGGPLRLQVWDQDSGRD 490
           D YV++FF GQ+ +TS    +  P+W+ ++ F D+       +++Q+ D D   D
Sbjct: 453 DPYVQVFFAGQKGKTSVQKSSYEPLWNEQVVFTDLFPPLCKRMKVQIRDSDKVND 507


>gi|14149680 extended synaptotagmin-like protein 1 [Homo sapiens]
          Length = 1104

 Score = 37.0 bits (84), Expect = 0.047
 Identities = 22/63 (34%), Positives = 34/63 (53%), Gaps = 2/63 (3%)

Query: 435 TDAYVKLFFGGQELRTSTVWDNNNPIWSVRLDFGDVLLATGGPLRLQVWDQDSGRDDDLL 494
           +D YVKL   G+  R+  V ++ NP W+   +   V    G  L ++V+D+D  + DD L
Sbjct: 674 SDPYVKLKLAGRSFRSHVVREDLNPRWNEVFEV-IVTSVPGQELEVEVFDKDLDK-DDFL 731

Query: 495 GTC 497
           G C
Sbjct: 732 GRC 734


>gi|119120884 fer-1-like 6 [Homo sapiens]
          Length = 1857

 Score = 35.8 bits (81), Expect = 0.11
 Identities = 18/62 (29%), Positives = 33/62 (53%)

Query: 429 GDWFTATDAYVKLFFGGQELRTSTVWDNNNPIWSVRLDFGDVLLATGGPLRLQVWDQDSG 488
           GD     D +V++ F GQ  RT+   +  +P+W  ++ F ++       +++QVWD+ S 
Sbjct: 272 GDSKDLVDPFVEVSFAGQMGRTTVQKNCADPVWHEQVIFKEMFPPLCRRVKIQVWDEGSM 331

Query: 489 RD 490
            D
Sbjct: 332 ND 333


>gi|27477109 itchy homolog E3 ubiquitin protein ligase [Homo
           sapiens]
          Length = 862

 Score = 33.9 bits (76), Expect = 0.40
 Identities = 25/84 (29%), Positives = 39/84 (46%), Gaps = 6/84 (7%)

Query: 415 AQLEVTFIQAWGLWG--DWFTATDAYVKLFFGGQELRTSTVWDNNNPIWSVRLDFGDVLL 472
           +QL++T I A       +WF     YV++   GQ  +T    + N+P W   L    V++
Sbjct: 18  SQLQITVISAKLKENKKNWF-GPSPYVEVTVDGQSKKTEKCNNTNSPKWKQPLT---VIV 73

Query: 473 ATGGPLRLQVWDQDSGRDDDLLGT 496
                L  +VW   + + D LLGT
Sbjct: 74  TPVSKLHFRVWSHQTLKSDVLLGT 97


>gi|227496504 multiple C2 domains, transmembrane 2 isoform 3 [Homo
           sapiens]
          Length = 306

 Score = 33.5 bits (75), Expect = 0.52
 Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 2/69 (2%)

Query: 427 LWGDWFTATDAYVKLFFGGQELRTSTVWDNNNPIWSVRLDFGDVLLATGGPLRLQVWDQD 486
           L  D+   +D +  L  G   L+T TV+ N NP W+    F   +      L + V+D+D
Sbjct: 110 LAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTF--PIKDIHDVLEVTVFDED 167

Query: 487 SGRDDDLLG 495
             +  D LG
Sbjct: 168 GDKPPDFLG 176


>gi|111118994 brain-specific angiogenesis inhibitor 1 precursor
           [Homo sapiens]
          Length = 1584

 Score = 32.7 bits (73), Expect = 0.89
 Identities = 23/74 (31%), Positives = 33/74 (44%), Gaps = 11/74 (14%)

Query: 362 RALSQYLTDRARWRDCSRPCPPGRQKSPRDPCQ------CVCHGSAVTTQDCCPRQRGLA 415
           RA+     + + W  CS  C  GRQ+  R+ C         C G  V T+DC  +Q    
Sbjct: 464 RAVDGNWNEWSSWSACSASCSQGRQQRTRE-CNGPSYGGAECQGHWVETRDCFLQQ---C 519

Query: 416 QLEVTFIQAWGLWG 429
            ++  + QAW  WG
Sbjct: 520 PVDGKW-QAWASWG 532


>gi|19718759 myoferlin isoform b [Homo sapiens]
          Length = 2048

 Score = 32.7 bits (73), Expect = 0.89
 Identities = 21/91 (23%), Positives = 44/91 (48%), Gaps = 4/91 (4%)

Query: 410 RQRGLAQLEVTFIQA----WGLWGDWFTATDAYVKLFFGGQELRTSTVWDNNNPIWSVRL 465
           R   + Q++  F Q     +G   D     D +V++ F G+++ T+ +  N NP W+  +
Sbjct: 366 RAEDIPQMDDAFSQTVKEIFGGNADKKNLVDPFVEVSFAGKKVCTNIIEKNANPEWNQVV 425

Query: 466 DFGDVLLATGGPLRLQVWDQDSGRDDDLLGT 496
           +      +    ++L ++D D    +D++GT
Sbjct: 426 NLQIKFPSVCEKIKLTIYDWDRLTKNDVVGT 456


>gi|7305053 myoferlin isoform a [Homo sapiens]
          Length = 2061

 Score = 32.7 bits (73), Expect = 0.89
 Identities = 21/91 (23%), Positives = 44/91 (48%), Gaps = 4/91 (4%)

Query: 410 RQRGLAQLEVTFIQA----WGLWGDWFTATDAYVKLFFGGQELRTSTVWDNNNPIWSVRL 465
           R   + Q++  F Q     +G   D     D +V++ F G+++ T+ +  N NP W+  +
Sbjct: 366 RAEDIPQMDDAFSQTVKEIFGGNADKKNLVDPFVEVSFAGKKVCTNIIEKNANPEWNQVV 425

Query: 466 DFGDVLLATGGPLRLQVWDQDSGRDDDLLGT 496
           +      +    ++L ++D D    +D++GT
Sbjct: 426 NLQIKFPSVCEKIKLTIYDWDRLTKNDVVGT 456


>gi|148529000 deleted in bladder cancer 1 [Homo sapiens]
          Length = 761

 Score = 32.0 bits (71), Expect = 1.5
 Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 3/55 (5%)

Query: 183 VVHTPPLHPDFKRALGDLPHHFNASTQPAYLRLISNYGTHFIRAVELGGRISALT 237
           V H  PL P+F+R++  L      +TQ     +I  YGTH + +  LGG   ALT
Sbjct: 91  VRHPVPLMPEFQRSIRLLGRR--PTTQQFIDTIIKKYGTHLLISATLGGE-EALT 142


>gi|219804203 rabphilin 3A homolog isoform 1 [Homo sapiens]
          Length = 694

 Score = 32.0 bits (71), Expect = 1.5
 Identities = 31/107 (28%), Positives = 46/107 (42%), Gaps = 8/107 (7%)

Query: 415 AQLEVTFIQAWGLWG-DWFTATDAYVKLFF-----GGQELRTSTVWDNNNPIWSVRLDFG 468
           + L+ T I+A GL   D     D YVKL          +LRT T+ +  NPIW+  L + 
Sbjct: 407 SSLQCTIIKAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPIWNETLVYH 466

Query: 469 DVL--LATGGPLRLQVWDQDSGRDDDLLGTCDQAPKSGSHEVRCNLN 513
            +         LR+ V D+D    ++ +G    + K      R N N
Sbjct: 467 GITDEDMQRKTLRISVCDEDKFGHNEFIGETRFSLKKLKPNQRKNFN 513


>gi|45267837 rabphilin 3A homolog isoform 2 [Homo sapiens]
          Length = 690

 Score = 32.0 bits (71), Expect = 1.5
 Identities = 31/107 (28%), Positives = 46/107 (42%), Gaps = 8/107 (7%)

Query: 415 AQLEVTFIQAWGLWG-DWFTATDAYVKLFF-----GGQELRTSTVWDNNNPIWSVRLDFG 468
           + L+ T I+A GL   D     D YVKL          +LRT T+ +  NPIW+  L + 
Sbjct: 403 SSLQCTIIKAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPIWNETLVYH 462

Query: 469 DVL--LATGGPLRLQVWDQDSGRDDDLLGTCDQAPKSGSHEVRCNLN 513
            +         LR+ V D+D    ++ +G    + K      R N N
Sbjct: 463 GITDEDMQRKTLRISVCDEDKFGHNEFIGETRFSLKKLKPNQRKNFN 509


>gi|134031945 SCO-spondin [Homo sapiens]
          Length = 5147

 Score = 31.6 bits (70), Expect = 2.0
 Identities = 20/62 (32%), Positives = 24/62 (38%), Gaps = 15/62 (24%)

Query: 374  WRDCSRPCPPGRQKSPRDPCQCVCHGSAVTTQDCCPRQRGLAQLEVTFIQAWGLWGDWFT 433
            WR  SR CP     SP D     C G A   + C P    +  +       WGLW  W T
Sbjct: 2797 WRSRSRLCP-----SPGDSS---CPGDATQEEPCSPPVCPVPSI-------WGLWAPWST 2841

Query: 434  AT 435
             +
Sbjct: 2842 CS 2843



 Score = 30.8 bits (68), Expect = 3.4
 Identities = 22/68 (32%), Positives = 27/68 (39%), Gaps = 9/68 (13%)

Query: 372  ARWRDCSRPCPPGRQKSPRDPCQCVC--HGSAVTTQDC----CPRQRGLAQLEVT--FIQ 423
            + W  CS+PC  G+ +S    C C    HG A  T +        QR       T     
Sbjct: 3415 SEWTMCSQPCR-GQTRSRSRACACPTPQHGGAPCTGEAGEAGAQHQREACPSYATCPVDG 3473

Query: 424  AWGLWGDW 431
            AWG WG W
Sbjct: 3474 AWGPWGPW 3481


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.321    0.135    0.436 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,206,718
Number of Sequences: 37866
Number of extensions: 1150248
Number of successful extensions: 3102
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 39
Number of HSP's that attempted gapping in prelim test: 3006
Number of HSP's gapped (non-prelim): 125
length of query: 555
length of database: 18,247,518
effective HSP length: 107
effective length of query: 448
effective length of database: 14,195,856
effective search space: 6359743488
effective search space used: 6359743488
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 64 (29.3 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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