Guide to the Human Genome
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Name: FER1L6 Sequence: fasta or formatted (1857aa) NCBI GI: 119120884
Description:

fer-1-like 6

Referenced in:

Additional Membrane Functions

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.5        102           2
 C cysteine            1.2         22           1
 D aspartate           6.5        121           2
 E glutamate           7.6        141           2
 F phenylalanine       4.6         85           2
 G glycine             6.2        116           2
 H histidine           2.3         43           2
 I isoleucine          6.4        118           3
 K lysine              8.9        165           4
 L leucine             8.3        155           2
 M methionine          1.8         34           1
 N asparagine          3.7         69           2
 P proline             6.9        129           3
 Q glutamine           4.1         76           3
 R arginine            3.8         70           2
 S serine              7.0        130           3
 T threonine           4.4         81           2
 V valine              6.5        121           3
 W tryptophan          1.5         28           2
 Y tyrosine            2.7         51           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   fer-1-like 6 
OTOF                  0.474   otoferlin isoform a 
OTOF                  0.329   otoferlin isoform c 
OTOF                  0.325   otoferlin isoform b 
OTOF                  0.324   otoferlin isoform d 
DYSF                  0.185   dysferlin isoform 1 
DYSF                  0.185   dysferlin isoform 5 
DYSF                  0.185   dysferlin isoform 6 
DYSF                  0.185   dysferlin isoform 14 
DYSF                  0.185   dysferlin isoform 11 
DYSF                  0.185   dysferlin isoform 10 
DYSF                  0.182   dysferlin isoform 2 
DYSF                  0.182   dysferlin isoform 8 
DYSF                  0.182   dysferlin isoform 3 
DYSF                  0.182   dysferlin isoform 4 
DYSF                  0.182   dysferlin isoform 7 
DYSF                  0.182   dysferlin isoform 13 
DYSF                  0.182   dysferlin isoform 12 
DYSF                  0.182   dysferlin isoform 9 
MYOF                  0.177   myoferlin isoform b 
MYOF                  0.177   myoferlin isoform a 
FER1L5                0.107   fer-1-like 5 isoform 1 
FER1L5                0.105   fer-1-like 5 isoform 2 
RASAL1                0.009   RAS protein activator like 1 
SYT3                  0.008   synaptotagmin III 
SYT3                  0.008   synaptotagmin III 
SYT3                  0.008   synaptotagmin III 
PRKCB                 0.008   protein kinase C, beta isoform 1 
PRKCB                 0.008   protein kinase C, beta isoform 2 
PCLO                  0.008   piccolo isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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