Guide to the Human Genome
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Name: MYOF Sequence: fasta or formatted (2048aa) NCBI GI: 19718759
Description:

myoferlin isoform b

Referenced in:

Additional Membrane Functions

Other entries for this name:
alt prot [2061aa] myoferlin isoform a
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.9        101           3
 C cysteine            1.3         27           1
 D aspartate           6.5        134           2
 E glutamate           7.6        156           3
 F phenylalanine       4.2         86           2
 G glycine             6.4        131           2
 H histidine           1.8         36           1
 I isoleucine          6.0        123           3
 K lysine              7.3        149           3
 L leucine             9.1        187           3
 M methionine          2.0         41           1
 N asparagine          4.4         90           2
 P proline             6.4        132           3
 Q glutamine           3.2         66           1
 R arginine            5.5        113           4
 S serine              5.8        119           3
 T threonine           5.4        111           2
 V valine              6.5        134           2
 W tryptophan          2.1         42           2
 Y tyrosine            3.4         70           4
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   myoferlin isoform b 
MYOF                  0.998   myoferlin isoform a 
DYSF                  0.566   dysferlin isoform 3 
DYSF                  0.565   dysferlin isoform 5 
DYSF                  0.565   dysferlin isoform 9 
DYSF                  0.565   dysferlin isoform 2 
DYSF                  0.564   dysferlin isoform 4 
DYSF                  0.564   dysferlin isoform 10 
DYSF                  0.564   dysferlin isoform 6 
DYSF                  0.563   dysferlin isoform 8 
DYSF                  0.563   dysferlin isoform 1 
DYSF                  0.563   dysferlin isoform 13 
DYSF                  0.563   dysferlin isoform 7 
DYSF                  0.563   dysferlin isoform 11 
DYSF                  0.562   dysferlin isoform 14 
DYSF                  0.561   dysferlin isoform 12 
FER1L5                0.360   fer-1-like 5 isoform 2 
FER1L5                0.166   fer-1-like 5 isoform 1 
FER1L6                0.159   fer-1-like 6 
OTOF                  0.159   otoferlin isoform b 
OTOF                  0.158   otoferlin isoform c 
OTOF                  0.158   otoferlin isoform a 
OTOF                  0.157   otoferlin isoform d 
SYT3                  0.009   synaptotagmin III 
SYT3                  0.009   synaptotagmin III 
SYT3                  0.009   synaptotagmin III 
ITSN2                 0.008   intersectin 2 isoform 3 
ITSN2                 0.008   intersectin 2 isoform 1 
MCTP1                 0.008   multiple C2 domains, transmembrane 1 isoform S [Homo...
MCTP1                 0.008   multiple C2 domains, transmembrane 1 isoform L [Hom...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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