Guide to the Human Genome
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Name: NAB2 Sequence: fasta or formatted (525aa) NCBI GI: 5174607
Description:

NGFI-A binding protein 2

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.8         41           3
 C cysteine            1.0          5           1
 D aspartate           3.4         18           2
 E glutamate           9.1         48           3
 F phenylalanine       2.5         13           1
 G glycine            10.7         56           3
 H histidine           2.3         12           1
 I isoleucine          2.5         13           2
 K lysine              4.0         21           2
 L leucine            11.4         60           3
 M methionine          1.9         10           1
 N asparagine          1.3          7           1
 P proline            10.5         55           3
 Q glutamine           4.2         22           2
 R arginine            8.0         42           2
 S serine              9.1         48           2
 T threonine           3.2         17           1
 V valine              5.0         26           2
 W tryptophan          0.6          3           1
 Y tyrosine            1.5          8           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   NGFI-A binding protein 2 
NAB1                  0.289   NGFI-A binding protein 1 
PPP1R10               0.020   protein phosphatase 1, regulatory subunit 10 
OGFR                  0.019   opioid growth factor receptor 
PRDM8                 0.019   PR domain containing 8 
PRDM8                 0.019   PR domain containing 8 
EVX2                  0.018   even-skipped homeobox 2 
SF1                   0.016   splicing factor 1 isoform 3 
SF1                   0.016   splicing factor 1 isoform 2 
SF1                   0.016   splicing factor 1 isoform 1 
DMRTA2                0.016   DMRT-like family A2 
ELN                   0.016   elastin isoform e precursor 
ELN                   0.016   elastin isoform d precursor 
ELN                   0.016   elastin isoform c precursor 
ELN                   0.016   elastin isoform b precursor 
ELN                   0.016   elastin isoform a precursor 
KHSRP                 0.016   KH-type splicing regulatory protein 
PNMA2                 0.016   paraneoplastic antigen MA2 
ADRA1D                0.016   alpha-1D-adrenergic receptor 
FOXH1                 0.016   forkhead box H1 
COL10A1               0.016   type X collagen alpha 1 precursor 
ZNF503                0.015   zinc finger protein 503 
AGAP2                 0.015   centaurin, gamma 1 isoform PIKE-L 
NEURL4                0.015   neuralized homolog 4 isoform 1 
NEURL4                0.015   neuralized homolog 4 isoform 2 
WAS                   0.014   Wiskott-Aldrich syndrome protein 
FLJ22184              0.014   PREDICTED: hypothetical protein FLJ22184 
FLJ22184              0.014   PREDICTED: hypothetical protein FLJ22184 
FLJ22184              0.014   PREDICTED: hypothetical protein LOC80164 
CPSF6                 0.014   cleavage and polyadenylation specific factor 6, 68 ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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