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Search of human proteins with 5174409
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|5174409 CD2 antigen (cytoplasmic tail) binding protein 2
[Homo sapiens]
(341 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|5174409 CD2 antigen (cytoplasmic tail) binding protein 2 [Hom... 700 0.0
gi|55956788 nucleolin [Homo sapiens] 40 0.002
gi|32967601 ankyrin 3 isoform 1 [Homo sapiens] 36 0.057
gi|190194423 SPARC-like 1 [Homo sapiens] 36 0.057
gi|190341024 SPARC-like 1 [Homo sapiens] 36 0.057
gi|156104891 general transcription factor IIF, polypeptide 1, 74... 35 0.074
gi|169213067 PREDICTED: hypothetical protein [Homo sapiens] 33 0.28
gi|59814411 hypothetical protein LOC253725 [Homo sapiens] 33 0.37
gi|83641870 nucleophosmin 1 isoform 3 [Homo sapiens] 33 0.48
gi|10835063 nucleophosmin 1 isoform 1 [Homo sapiens] 33 0.48
gi|239749462 PREDICTED: similar to ubiquitin protein ligase E3 c... 33 0.48
gi|113420453 PREDICTED: similar to ubiquitin protein ligase E3 c... 33 0.48
gi|15147337 ubiquitin protein ligase E3 component n-recognin 5 [... 33 0.48
gi|194097411 transmembrane protein 119 [Homo sapiens] 33 0.48
gi|54124343 hypothetical protein LOC387680 [Homo sapiens] 33 0.48
gi|154090959 hypothetical protein LOC55747 [Homo sapiens] 33 0.48
gi|37537554 hypothetical protein FLJ37538 [Homo sapiens] 33 0.48
gi|62750349 histone deacetylase 5 isoform 3 [Homo sapiens] 32 0.63
gi|62750347 histone deacetylase 5 isoform 1 [Homo sapiens] 32 0.63
gi|42741684 zinc finger protein 265 isoform 1 [Homo sapiens] 32 0.63
gi|42741682 zinc finger protein 265 isoform 2 [Homo sapiens] 32 0.63
gi|30794264 glycosylphosphatidylinositol anchored high density l... 32 0.82
gi|55953110 retinoblastoma protein-binding zinc finger protein i... 32 0.82
gi|20336260 retinoblastoma protein-binding zinc finger protein i... 32 0.82
gi|20336258 retinoblastoma protein-binding zinc finger protein i... 32 0.82
gi|84043963 eukaryotic translation initiation factor 5B [Homo sa... 32 0.82
gi|205277458 G patch domain containing 3 [Homo sapiens] 32 0.82
gi|21735415 centromere protein B [Homo sapiens] 32 1.1
gi|239753928 PREDICTED: hypothetical protein [Homo sapiens] 32 1.1
gi|239748470 PREDICTED: hypothetical protein [Homo sapiens] 32 1.1
>gi|5174409 CD2 antigen (cytoplasmic tail) binding protein 2 [Homo
sapiens]
Length = 341
Score = 700 bits (1807), Expect = 0.0
Identities = 341/341 (100%), Positives = 341/341 (100%)
Query: 1 MPKRKVTFQGVGDEEDEDEIIVPKKKLVDPVAGSGGPGSRFKGKHSLDSDEEEDDDDGGS 60
MPKRKVTFQGVGDEEDEDEIIVPKKKLVDPVAGSGGPGSRFKGKHSLDSDEEEDDDDGGS
Sbjct: 1 MPKRKVTFQGVGDEEDEDEIIVPKKKLVDPVAGSGGPGSRFKGKHSLDSDEEEDDDDGGS 60
Query: 61 SKYDILASEDVEGQEAATLPSEGGVRITPFNLQEEMEEGHFDADGNYFLNRDAQIRDSWL 120
SKYDILASEDVEGQEAATLPSEGGVRITPFNLQEEMEEGHFDADGNYFLNRDAQIRDSWL
Sbjct: 61 SKYDILASEDVEGQEAATLPSEGGVRITPFNLQEEMEEGHFDADGNYFLNRDAQIRDSWL 120
Query: 121 DNIDWVKIRERPPGQRQASDSEEEDSLGQTSMSAQALLEGLLELLLPRETVAGALRRLGA 180
DNIDWVKIRERPPGQRQASDSEEEDSLGQTSMSAQALLEGLLELLLPRETVAGALRRLGA
Sbjct: 121 DNIDWVKIRERPPGQRQASDSEEEDSLGQTSMSAQALLEGLLELLLPRETVAGALRRLGA 180
Query: 181 RGGGKGRKGPGQPSSPQRLDRLSGLADQMVARGNLGVYQETRERLAMRLKGLGCQTLGPH 240
RGGGKGRKGPGQPSSPQRLDRLSGLADQMVARGNLGVYQETRERLAMRLKGLGCQTLGPH
Sbjct: 181 RGGGKGRKGPGQPSSPQRLDRLSGLADQMVARGNLGVYQETRERLAMRLKGLGCQTLGPH 240
Query: 241 NPTPPPSLDMFAEELAEEELETPTPTQRGEAESRGDGLVDVMWEYKWENTGDAELYGPFT 300
NPTPPPSLDMFAEELAEEELETPTPTQRGEAESRGDGLVDVMWEYKWENTGDAELYGPFT
Sbjct: 241 NPTPPPSLDMFAEELAEEELETPTPTQRGEAESRGDGLVDVMWEYKWENTGDAELYGPFT 300
Query: 301 SAQMQTWVSEGYFPDGVYCRKLDPPGGQFYNSKRIDFDLYT 341
SAQMQTWVSEGYFPDGVYCRKLDPPGGQFYNSKRIDFDLYT
Sbjct: 301 SAQMQTWVSEGYFPDGVYCRKLDPPGGQFYNSKRIDFDLYT 341
>gi|55956788 nucleolin [Homo sapiens]
Length = 710
Score = 40.4 bits (93), Expect = 0.002
Identities = 33/136 (24%), Positives = 64/136 (47%), Gaps = 14/136 (10%)
Query: 13 DEEDEDEIIVPKKKLVDPVAGSGGPGSRFKGKHSLDSDEEEDDDDGGSSKYDILASEDVE 72
++EDEDEI K A + P S + + DE++DDD+ S+ + + + +
Sbjct: 163 EDEDEDEIEPAAMK-----AAAAAPASEDEDDEDDEDDEDDDDDEEDDSEEEAMETTPAK 217
Query: 73 GQEAATLPSEGGVRITPFNLQEEMEEGHFDADGNYFLNRDAQIRDSWLDNIDWVKIRERP 132
G++AA + V + N+ E+ +E D D + + D + D D + + E P
Sbjct: 218 GKKAAKV-----VPVKAKNVAEDEDEEEDDEDEDDDDDEDDEDDDDEDDEEEEEEEEEEP 272
Query: 133 ----PGQRQASDSEEE 144
PG+R+ ++++
Sbjct: 273 VKEAPGKRKKEMAKQK 288
Score = 28.9 bits (63), Expect = 6.9
Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
Query: 48 DSDEEEDDDDGGSSKYDILASEDVEGQEAATLPSEGGVRITPFNLQEEMEEGHFDAD 104
DSDEEEDDD + D ED + E A + + P + E+ E+ D D
Sbjct: 144 DSDEEEDDDSEEDEEDDEDEDEDEDEIEPAAMKAAAA---APASEDEDDEDDEDDED 197
>gi|32967601 ankyrin 3 isoform 1 [Homo sapiens]
Length = 4377
Score = 35.8 bits (81), Expect = 0.057
Identities = 36/129 (27%), Positives = 57/129 (44%), Gaps = 7/129 (5%)
Query: 29 DPVAGSGGPGSRFKGKHSLDSDEEEDDDDGGSSKYDILASEDVEGQEAATLPSEGGVRIT 88
D V + P G++ D +E ED G + KY L +D++ +LP+EG + +
Sbjct: 849 DEVRKANAPEMLSDGEYISDVEEGEDAMTGDTDKY--LGPQDLKELGDDSLPAEGYMGFS 906
Query: 89 PFNLQEEMEEGHFDADGNYFLNRDAQIRDSWLDNIDWVKIRERPPGQRQASDSEEEDSLG 148
+ F +D +Y LNR + RDS + V +E+ + DS DSL
Sbjct: 907 LGARSASLRS--FSSDRSYTLNRSSYARDSMMIEELLVPSKEQHLTFTREFDS---DSLR 961
Query: 149 QTSMSAQAL 157
S +A L
Sbjct: 962 HYSWAADTL 970
>gi|190194423 SPARC-like 1 [Homo sapiens]
Length = 664
Score = 35.8 bits (81), Expect = 0.057
Identities = 32/154 (20%), Positives = 63/154 (40%), Gaps = 23/154 (14%)
Query: 5 KVTFQGVGDEEDEDEIIVPKKKLVDPVAGSGGPGSRFKGKHSLDSDEEEDDDDGGSSKYD 64
K + + + ++ +E V + L++P G+ H +D D ++D DDGG+
Sbjct: 299 KTGLEAISNHKETEEKTVSEALLMEPT----DDGNTTPRNHGVDDDGDDDGDDGGTDGPR 354
Query: 65 ILASEDVEGQEAATLPSEGGVRIT-PFNLQEEMEEGHFDADGNYFLNRDAQIRDSWLDNI 123
AS+D A L +E I ++E+ E+ H + +NI
Sbjct: 355 HSASDDYFIPSQAFLEAERAQSIAYHLKIEEQREKVHEN------------------ENI 396
Query: 124 DWVKIRERPPGQRQASDSEEEDSLGQTSMSAQAL 157
+ E ++ + S EE++ + +M A+
Sbjct: 397 GTTEPGEHQEAKKAENSSNEEETSSEGNMRVHAV 430
>gi|190341024 SPARC-like 1 [Homo sapiens]
Length = 664
Score = 35.8 bits (81), Expect = 0.057
Identities = 32/154 (20%), Positives = 63/154 (40%), Gaps = 23/154 (14%)
Query: 5 KVTFQGVGDEEDEDEIIVPKKKLVDPVAGSGGPGSRFKGKHSLDSDEEEDDDDGGSSKYD 64
K + + + ++ +E V + L++P G+ H +D D ++D DDGG+
Sbjct: 299 KTGLEAISNHKETEEKTVSEALLMEPT----DDGNTTPRNHGVDDDGDDDGDDGGTDGPR 354
Query: 65 ILASEDVEGQEAATLPSEGGVRIT-PFNLQEEMEEGHFDADGNYFLNRDAQIRDSWLDNI 123
AS+D A L +E I ++E+ E+ H + +NI
Sbjct: 355 HSASDDYFIPSQAFLEAERAQSIAYHLKIEEQREKVHEN------------------ENI 396
Query: 124 DWVKIRERPPGQRQASDSEEEDSLGQTSMSAQAL 157
+ E ++ + S EE++ + +M A+
Sbjct: 397 GTTEPGEHQEAKKAENSSNEEETSSEGNMRVHAV 430
>gi|156104891 general transcription factor IIF, polypeptide 1, 74kDa
[Homo sapiens]
Length = 517
Score = 35.4 bits (80), Expect = 0.074
Identities = 48/195 (24%), Positives = 77/195 (39%), Gaps = 36/195 (18%)
Query: 13 DEEDEDEIIVPKKKLVDPVAGSGGPGSRFKGKHSLDSDEEEDDDDGGSSKYDILASEDVE 72
D E+ VPK K P+A G + KG D + ED DDG D E
Sbjct: 222 DASGEEGGRVPKAKKKAPLAKGGRKKKKKKGS---DDEAFEDSDDG-----------DFE 267
Query: 73 GQEAATLPSEGGVRITPFNLQEE---------MEEGHFDADGNYFLNRDAQIRDSWLDNI 123
GQE + S+G + QEE EEG D + +++ ++
Sbjct: 268 GQEVDYM-SDGS-----SSSQEEPESKAKAPQQEEGPKGVDEQSDSSEESEEEKPPEEDK 321
Query: 124 DWVKIRERPPGQ---RQASDSEEEDSLGQTSMSAQALLEGLLELLLPRETVAGALRRLGA 180
+ + ++ P Q R+ SEE DS ++ + ++A L + ++ R +
Sbjct: 322 EEEEEKKAPTPQEKKRRKDSSEESDSSEESDIDSEA----SSALFMAKKKTPPKRERKPS 377
Query: 181 RGGGKGRKGPGQPSS 195
G +G PG PS+
Sbjct: 378 GGSSRGNSRPGTPSA 392
>gi|169213067 PREDICTED: hypothetical protein [Homo sapiens]
Length = 303
Score = 33.5 bits (75), Expect = 0.28
Identities = 34/131 (25%), Positives = 51/131 (38%), Gaps = 16/131 (12%)
Query: 130 ERPPGQRQASDSEEEDSLGQTSMSAQALLEGLL-----------ELLLPRETVAGALRRL 178
+RP Q + + S GQ +A AL L+ +LLL + G + L
Sbjct: 21 KRPAQTLQRTPRKHAASRGQAQAAAAALTPSLIPRAAIRQSQAPDLLLASRGITGCVNAL 80
Query: 179 GARGGGKGRKGPGQ-PSSPQRLDRLSGLADQMVARGNLGVYQETRERLAMRLKGLGCQTL 237
G RG + +GPG+ P + R +G ++ R R A RL+G L
Sbjct: 81 GHRGSPEAVRGPGRGRGPPNKAGRAAGSPTRVQRRPR----PLRPSRAAPRLRGEEPSLL 136
Query: 238 GPHNPTPPPSL 248
P P +L
Sbjct: 137 RPQLSRRPRAL 147
>gi|59814411 hypothetical protein LOC253725 [Homo sapiens]
Length = 1318
Score = 33.1 bits (74), Expect = 0.37
Identities = 17/69 (24%), Positives = 32/69 (46%)
Query: 14 EEDEDEIIVPKKKLVDPVAGSGGPGSRFKGKHSLDSDEEEDDDDGGSSKYDILASEDVEG 73
+++ED + P K + + G G F G L DE+E+ D + D A V+
Sbjct: 334 DDEEDNLFAPPKLTDEDFSPFGSGGGLFSGGKGLFDDEDEESDLFTEASQDRQAGASVKE 393
Query: 74 QEAATLPSE 82
+ +++ P +
Sbjct: 394 ESSSSKPGK 402
>gi|83641870 nucleophosmin 1 isoform 3 [Homo sapiens]
Length = 259
Score = 32.7 bits (73), Expect = 0.48
Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 6/89 (6%)
Query: 13 DEEDED-EIIVPKKKLVDPVAGSGGPGSRFKGKHSLDSDEEEDDDDGGSSKYDILASEDV 71
DEE+ED +++ K P GS P + K D D+++++DD D +D
Sbjct: 127 DEEEEDVKLLSISGKRSAPGGGSKVPQKKVKLAADEDDDDDDEEDDDEDDDDDDF--DDE 184
Query: 72 EGQEAATLPSEGGVRITPF-NLQEEMEEG 99
E +E A P + +R TP N Q+ + G
Sbjct: 185 EAEEKA--PVKKSIRDTPAKNAQKSNQNG 211
>gi|10835063 nucleophosmin 1 isoform 1 [Homo sapiens]
Length = 294
Score = 32.7 bits (73), Expect = 0.48
Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 6/89 (6%)
Query: 13 DEEDED-EIIVPKKKLVDPVAGSGGPGSRFKGKHSLDSDEEEDDDDGGSSKYDILASEDV 71
DEE+ED +++ K P GS P + K D D+++++DD D +D
Sbjct: 127 DEEEEDVKLLSISGKRSAPGGGSKVPQKKVKLAADEDDDDDDEEDDDEDDDDDDF--DDE 184
Query: 72 EGQEAATLPSEGGVRITPF-NLQEEMEEG 99
E +E A P + +R TP N Q+ + G
Sbjct: 185 EAEEKA--PVKKSIRDTPAKNAQKSNQNG 211
>gi|239749462 PREDICTED: similar to ubiquitin protein ligase E3
component n-recognin 5 isoform 2 [Homo sapiens]
Length = 2277
Score = 32.7 bits (73), Expect = 0.48
Identities = 29/126 (23%), Positives = 52/126 (41%), Gaps = 37/126 (29%)
Query: 12 GDEEDEDEII---VPKKKLVDPVAGS----------GGPGSRFKGKHSLDSDEEEDDDDG 58
G +E++D+I+ V + ++V+ VAG G + +G+H +E D+DG
Sbjct: 1035 GRDEEQDDIVSADVEEVEVVEGVAGEEDHHDEQEEHGEENAEAEGQH------DEHDEDG 1088
Query: 59 GSSKYDILASEDVEGQE------------------AATLPSEGGVRITPFNLQEEMEEGH 100
+ D+LA+ + E AAT SE G P E+ + +
Sbjct: 1089 SDMELDLLAAAETESDSESNHSNQDNASGRRSVVTAATAGSEAGASSVPAFFSEDDSQSN 1148
Query: 101 FDADGN 106
+D +
Sbjct: 1149 DSSDSD 1154
>gi|113420453 PREDICTED: similar to ubiquitin protein ligase E3
component n-recognin 5 isoform 1 [Homo sapiens]
Length = 2796
Score = 32.7 bits (73), Expect = 0.48
Identities = 29/126 (23%), Positives = 52/126 (41%), Gaps = 37/126 (29%)
Query: 12 GDEEDEDEII---VPKKKLVDPVAGS----------GGPGSRFKGKHSLDSDEEEDDDDG 58
G +E++D+I+ V + ++V+ VAG G + +G+H +E D+DG
Sbjct: 1554 GRDEEQDDIVSADVEEVEVVEGVAGEEDHHDEQEEHGEENAEAEGQH------DEHDEDG 1607
Query: 59 GSSKYDILASEDVEGQE------------------AATLPSEGGVRITPFNLQEEMEEGH 100
+ D+LA+ + E AAT SE G P E+ + +
Sbjct: 1608 SDMELDLLAAAETESDSESNHSNQDNASGRRSVVTAATAGSEAGASSVPAFFSEDDSQSN 1667
Query: 101 FDADGN 106
+D +
Sbjct: 1668 DSSDSD 1673
>gi|15147337 ubiquitin protein ligase E3 component n-recognin 5 [Homo
sapiens]
Length = 2799
Score = 32.7 bits (73), Expect = 0.48
Identities = 29/126 (23%), Positives = 52/126 (41%), Gaps = 37/126 (29%)
Query: 12 GDEEDEDEII---VPKKKLVDPVAGS----------GGPGSRFKGKHSLDSDEEEDDDDG 58
G +E++D+I+ V + ++V+ VAG G + +G+H +E D+DG
Sbjct: 1556 GRDEEQDDIVSADVEEVEVVEGVAGEEDHHDEQEEHGEENAEAEGQH------DEHDEDG 1609
Query: 59 GSSKYDILASEDVEGQE------------------AATLPSEGGVRITPFNLQEEMEEGH 100
+ D+LA+ + E AAT SE G P E+ + +
Sbjct: 1610 SDMELDLLAAAETESDSESNHSNQDNASGRRSVVTAATAGSEAGASSVPAFFSEDDSQSN 1669
Query: 101 FDADGN 106
+D +
Sbjct: 1670 DSSDSD 1675
>gi|194097411 transmembrane protein 119 [Homo sapiens]
Length = 283
Score = 32.7 bits (73), Expect = 0.48
Identities = 27/84 (32%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
Query: 23 PKKKLVDPVAGSGGPGSRFK-GKHSLDSDEEEDDDDGGSSKYDIL-ASEDVEGQEAATLP 80
PKKK VD +GGP + + + DS EE D + DIL A+++++ A L
Sbjct: 133 PKKKYVDQSDRAGGPRAFSEVPDRAPDSRPEEALDSSRQLQADILAATQNLKSPTRAALG 192
Query: 81 SEGGVRITPFNLQEEMEEGHFDAD 104
G R+ EE E+G + D
Sbjct: 193 GGDGARMVEGRGAEEEEKGSQEGD 216
>gi|54124343 hypothetical protein LOC387680 [Homo sapiens]
Length = 1341
Score = 32.7 bits (73), Expect = 0.48
Identities = 17/69 (24%), Positives = 32/69 (46%)
Query: 14 EEDEDEIIVPKKKLVDPVAGSGGPGSRFKGKHSLDSDEEEDDDDGGSSKYDILASEDVEG 73
+++ED + P K + + G G F G L DE+E+ D + D A V+
Sbjct: 334 DDEEDNLFAPPKLTDEDFSPFGSGGGLFSGGKGLFDDEDEESDLFTEAPQDRQAGASVKE 393
Query: 74 QEAATLPSE 82
+ +++ P +
Sbjct: 394 ESSSSKPGK 402
>gi|154090959 hypothetical protein LOC55747 [Homo sapiens]
Length = 1253
Score = 32.7 bits (73), Expect = 0.48
Identities = 17/69 (24%), Positives = 32/69 (46%)
Query: 14 EEDEDEIIVPKKKLVDPVAGSGGPGSRFKGKHSLDSDEEEDDDDGGSSKYDILASEDVEG 73
+++ED + P K + + G G F G L DE+E+ D + D A V+
Sbjct: 246 DDEEDNLFTPPKLTDEDFSPFGSGGGLFSGGKGLFDDEDEESDLFTEAPQDRQAGASVKE 305
Query: 74 QEAATLPSE 82
+ +++ P +
Sbjct: 306 ESSSSKPGK 314
>gi|37537554 hypothetical protein FLJ37538 [Homo sapiens]
Length = 841
Score = 32.7 bits (73), Expect = 0.48
Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Query: 231 GLGCQTLGPHNPTPPPSLDMFAE--ELAEEELETPTPTQRGEAESRG 275
GL LG PTPP D +E E EE++ P P + GE + G
Sbjct: 233 GLAGPPLGGGGPTPPAGADSDSEESEAIYEEMKYPLPEEAGEGRANG 279
>gi|62750349 histone deacetylase 5 isoform 3 [Homo sapiens]
Length = 1123
Score = 32.3 bits (72), Expect = 0.63
Identities = 20/79 (25%), Positives = 40/79 (50%), Gaps = 8/79 (10%)
Query: 1 MPKRKVTFQGVGDEE--DEDEIIVPKKKLVDPVAGSGGPGSRFKGKHSLDSDEEEDDDDG 58
+P++ T +EE ++ E+++ + L P GS + + + + EEED++D
Sbjct: 542 LPRQPTTHPEETEEELTEQQEVLLGEGALTMPREGST------ESESTQEDLEEEDEEDD 595
Query: 59 GSSKYDILASEDVEGQEAA 77
G + D + +D EG+ A
Sbjct: 596 GEEEEDCIQVKDEEGESGA 614
>gi|62750347 histone deacetylase 5 isoform 1 [Homo sapiens]
Length = 1122
Score = 32.3 bits (72), Expect = 0.63
Identities = 20/79 (25%), Positives = 40/79 (50%), Gaps = 8/79 (10%)
Query: 1 MPKRKVTFQGVGDEE--DEDEIIVPKKKLVDPVAGSGGPGSRFKGKHSLDSDEEEDDDDG 58
+P++ T +EE ++ E+++ + L P GS + + + + EEED++D
Sbjct: 541 LPRQPTTHPEETEEELTEQQEVLLGEGALTMPREGST------ESESTQEDLEEEDEEDD 594
Query: 59 GSSKYDILASEDVEGQEAA 77
G + D + +D EG+ A
Sbjct: 595 GEEEEDCIQVKDEEGESGA 613
>gi|42741684 zinc finger protein 265 isoform 1 [Homo sapiens]
Length = 330
Score = 32.3 bits (72), Expect = 0.63
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 23/64 (35%)
Query: 12 GDEEDEDEIIVPKKKLVDPVAGSGGPGSRFKGKHSLDSDEEEDDDDGGSSKYDILASEDV 71
G+EEDEDE + S++K DE+ED+DD SKY++ ASE+
Sbjct: 155 GEEEDEDEDL-----------------SKYK------LDEDEDEDDADLSKYNLDASEEE 191
Query: 72 EGQE 75
+ +
Sbjct: 192 DSNK 195
Score = 29.3 bits (64), Expect = 5.3
Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 11/63 (17%)
Query: 36 GPGSRFKGKHSLDSDEEEDDDDGGSSKYDILASEDVEGQEAATLPSEGGVRITPFNLQEE 95
GP S K +S+ EE+D+D SKY + ED E ++ +NL
Sbjct: 140 GPASILKEVEDKESEGEEEDEDEDLSKYKLDEDED-----------EDDADLSKYNLDAS 188
Query: 96 MEE 98
EE
Sbjct: 189 EEE 191
>gi|42741682 zinc finger protein 265 isoform 2 [Homo sapiens]
Length = 320
Score = 32.3 bits (72), Expect = 0.63
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 23/64 (35%)
Query: 12 GDEEDEDEIIVPKKKLVDPVAGSGGPGSRFKGKHSLDSDEEEDDDDGGSSKYDILASEDV 71
G+EEDEDE + S++K DE+ED+DD SKY++ ASE+
Sbjct: 155 GEEEDEDEDL-----------------SKYK------LDEDEDEDDADLSKYNLDASEEE 191
Query: 72 EGQE 75
+ +
Sbjct: 192 DSNK 195
Score = 29.3 bits (64), Expect = 5.3
Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 11/63 (17%)
Query: 36 GPGSRFKGKHSLDSDEEEDDDDGGSSKYDILASEDVEGQEAATLPSEGGVRITPFNLQEE 95
GP S K +S+ EE+D+D SKY + ED E ++ +NL
Sbjct: 140 GPASILKEVEDKESEGEEEDEDEDLSKYKLDEDED-----------EDDADLSKYNLDAS 188
Query: 96 MEE 98
EE
Sbjct: 189 EEE 191
>gi|30794264 glycosylphosphatidylinositol anchored high density
lipoprotein binding protein 1 [Homo sapiens]
Length = 184
Score = 32.0 bits (71), Expect = 0.82
Identities = 14/38 (36%), Positives = 21/38 (55%)
Query: 43 GKHSLDSDEEEDDDDGGSSKYDILASEDVEGQEAATLP 80
G+ +EEE+D+D G YD ++VE +E LP
Sbjct: 18 GRGQTQQEEEEEDEDHGPDDYDEEDEDEVEEEETNRLP 55
>gi|55953110 retinoblastoma protein-binding zinc finger protein
isoform c [Homo sapiens]
Length = 1481
Score = 32.0 bits (71), Expect = 0.82
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 9/51 (17%)
Query: 48 DSDEEEDDDDGGSSKYDILASEDVEGQEAATLPSEGGVRITPFNLQEEMEE 98
D +EEEDDDD ED EG+E A++P+E V+ E+ E+
Sbjct: 76 DEEEEEDDDDD--------ELED-EGEEEASMPNENSVKEPEIRCDEKPED 117
>gi|20336260 retinoblastoma protein-binding zinc finger protein
isoform b [Homo sapiens]
Length = 1682
Score = 32.0 bits (71), Expect = 0.82
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 9/51 (17%)
Query: 48 DSDEEEDDDDGGSSKYDILASEDVEGQEAATLPSEGGVRITPFNLQEEMEE 98
D +EEEDDDD ED EG+E A++P+E V+ E+ E+
Sbjct: 277 DEEEEEDDDDD--------ELED-EGEEEASMPNENSVKEPEIRCDEKPED 318
>gi|20336258 retinoblastoma protein-binding zinc finger protein
isoform a [Homo sapiens]
Length = 1718
Score = 32.0 bits (71), Expect = 0.82
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 9/51 (17%)
Query: 48 DSDEEEDDDDGGSSKYDILASEDVEGQEAATLPSEGGVRITPFNLQEEMEE 98
D +EEEDDDD ED EG+E A++P+E V+ E+ E+
Sbjct: 277 DEEEEEDDDDD--------ELED-EGEEEASMPNENSVKEPEIRCDEKPED 318
>gi|84043963 eukaryotic translation initiation factor 5B [Homo
sapiens]
Length = 1220
Score = 32.0 bits (71), Expect = 0.82
Identities = 29/113 (25%), Positives = 49/113 (43%), Gaps = 11/113 (9%)
Query: 47 LDSDEEEDDDDGGSSKYDILAS-EDVEGQEAATLPSEGGVRITPFNLQEEMEEGHFDADG 105
++ +EEED +D G ++ +AS E+ E E + E V+ P +EE EE D +
Sbjct: 490 VEPEEEEDTEDAGLDDWEAMASDEETEKVEGNKVHIE--VKENPEEEEEEEEEEEEDEES 547
Query: 106 NYFLNRDAQIRDS--------WLDNIDWVKIRERPPGQRQASDSEEEDSLGQT 150
+ + S D D K ++ P + +SDSE + +T
Sbjct: 548 EEEEEEEGESEGSEGDEEDEKVSDEKDSGKTLDKKPSKEMSSDSEYDSDDDRT 600
>gi|205277458 G patch domain containing 3 [Homo sapiens]
Length = 525
Score = 32.0 bits (71), Expect = 0.82
Identities = 30/120 (25%), Positives = 47/120 (39%), Gaps = 16/120 (13%)
Query: 30 PVAGSGGPGSRFKGKHSLDSDEEEDDDDGGSSKYDILASEDVEGQEAATLPSEGGVRITP 89
P + G P + +S +EDDD G + EDV GQE T ++
Sbjct: 269 PASPCGEPEEEVGKEEEEESHSDEDDDRGEEWERHEALHEDVTGQERTT------EQLFE 322
Query: 90 FNLQEEMEEGH----FDADGNYFLNR----DAQIRDSWLDNIDWVKIRERPPGQRQASDS 141
++ + E+G F D ++ D Q D W ++D +R G + A DS
Sbjct: 323 EEIELKWEKGGSGLVFYTDAQFWQEEEGDFDEQTADDW--DVDMSVYYDRDGGDKDARDS 380
>gi|21735415 centromere protein B [Homo sapiens]
Length = 599
Score = 31.6 bits (70), Expect = 1.1
Identities = 33/126 (26%), Positives = 54/126 (42%), Gaps = 23/126 (18%)
Query: 9 QGVGDEEDEDEIIVPKKKLVDPVAGSG---GPGSRFKGKHSLDSDEEEDDDDGGSSKYDI 65
+G G+EE+E+ + + G G G + + +DSDEEE++D+ S
Sbjct: 419 EGEGEEEEEEG------EEEEEEGGEGEELGEEEEVEEEGDVDSDEEEEEDEESS----- 467
Query: 66 LASEDVEGQEAATLPSEGGVRITPFNLQEEME-------EGHFDADGNYFLNRDAQIRDS 118
SE +E ++ A E G + QEE + EG D+D + D + D
Sbjct: 468 --SEGLEAEDWAQGVVEAGGSFGAYGAQEEAQCPTLHFLEGGEDSDSDSEEEDDEEEDDE 525
Query: 119 WLDNID 124
D+ D
Sbjct: 526 DEDDDD 531
Score = 30.8 bits (68), Expect = 1.8
Identities = 27/110 (24%), Positives = 44/110 (40%), Gaps = 5/110 (4%)
Query: 35 GGPGSRFKGKHSLDSDEEEDDDDGGSSKYDILASEDVEGQEAATLPSEGGVRITPFNLQE 94
GGP + + +EEE++++ + E+ EG+E EGG +E
Sbjct: 391 GGPNATITTSLKSEGEEEEEEEEEEEEEEGEGEEEEEEGEEE---EEEGGEGEELGEEEE 447
Query: 95 EMEEGHFDADGNYFLNRDAQIRDSWLDNIDWVKIRERPPGQRQASDSEEE 144
EEG D+D D + L+ DW + G A ++EE
Sbjct: 448 VEEEGDVDSDEEE--EEDEESSSEGLEAEDWAQGVVEAGGSFGAYGAQEE 495
>gi|239753928 PREDICTED: hypothetical protein [Homo sapiens]
Length = 1179
Score = 31.6 bits (70), Expect = 1.1
Identities = 27/82 (32%), Positives = 36/82 (43%), Gaps = 3/82 (3%)
Query: 125 WVKIRERPPGQRQASDSEEEDSLGQTSMSAQALLEGLLELLLPRETV--AGALRRLGARG 182
W++ R PG A+ + + +G + AL EG +L + R T AGA G G
Sbjct: 579 WLQAGYRGPGLPGAAPGQAVELIGLLRAAGGALQEGQ-QLPVSRGTQGEAGAAGVRGPVG 637
Query: 183 GGKGRKGPGQPSSPQRLDRLSG 204
G G GPG Q L L G
Sbjct: 638 GAGGADGPGVQEREQALCTLLG 659
>gi|239748470 PREDICTED: hypothetical protein [Homo sapiens]
Length = 889
Score = 31.6 bits (70), Expect = 1.1
Identities = 27/82 (32%), Positives = 36/82 (43%), Gaps = 3/82 (3%)
Query: 125 WVKIRERPPGQRQASDSEEEDSLGQTSMSAQALLEGLLELLLPRETV--AGALRRLGARG 182
W++ R PG A+ + + +G + AL EG +L + R T AGA G G
Sbjct: 579 WLQAGYRGPGLPGAAPGQAVELIGLLRAAGGALQEGQ-QLPVSRGTQGEAGAAGVRGPVG 637
Query: 183 GGKGRKGPGQPSSPQRLDRLSG 204
G G GPG Q L L G
Sbjct: 638 GAGGADGPGVQEREQALCTLLG 659
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.312 0.135 0.400
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,038,312
Number of Sequences: 37866
Number of extensions: 922695
Number of successful extensions: 4157
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 104
Number of HSP's that attempted gapping in prelim test: 3909
Number of HSP's gapped (non-prelim): 283
length of query: 341
length of database: 18,247,518
effective HSP length: 103
effective length of query: 238
effective length of database: 14,347,320
effective search space: 3414662160
effective search space used: 3414662160
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.