Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC730429 Sequence: fasta or formatted (2277aa) NCBI GI: 239749462
Description:

PREDICTED: similar to ubiquitin protein ligase E3 component n-recognin 5 isoform 2

Referenced in:

Ubiquitin and Related Protein Modifications

Other entries for this name:
alt prot [2796aa] PREDICTED: similar to ubiquitin protein ligase E3 component n-rec...
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.3        188           7
 C cysteine            2.2         49           3
 D aspartate           5.9        134           3
 E glutamate           7.5        170           4
 F phenylalanine       3.0         68           2
 G glycine             5.3        120           3
 H histidine           2.1         48           2
 I isoleucine          4.0         90           2
 K lysine              4.6        104           3
 L leucine             9.6        218           3
 M methionine          2.9         66           2
 N asparagine          4.5        103           2
 P proline             6.0        137           3
 Q glutamine           4.5        102           2
 R arginine            6.8        154           3
 S serine             10.1        229           5
 T threonine           4.9        111           2
 V valine              5.6        127           2
 W tryptophan          0.8         18           1
 Y tyrosine            1.8         41           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to ubiquitin protein ligase E3 c... 
LOC730429             0.998   PREDICTED: similar to ubiquitin protein ligase E3 c...
UBR5                  0.983   ubiquitin protein ligase E3 component n-recognin 5 [...
HACE1                 0.021   HECT domain and ankyrin repeat containing, E3 ubiqu...
HUWE1                 0.019   HECT, UBA and WWE domain containing 1 
KIAA0317              0.019   hypothetical protein LOC9870 
UBE3A                 0.016   ubiquitin protein ligase E3A isoform 3 
UBE3A                 0.016   ubiquitin protein ligase E3A isoform 1 
UBE3A                 0.016   ubiquitin protein ligase E3A isoform 2 
NEDD4L                0.016   neural precursor cell expressed, developmentally do...
NEDD4L                0.016   neural precursor cell expressed, developmentally dow...
NEDD4L                0.016   neural precursor cell expressed, developmentally do...
NEDD4L                0.016   neural precursor cell expressed, developmentally do...
NEDD4L                0.016   neural precursor cell expressed, developmentally do...
NEDD4L                0.016   neural precursor cell expressed, developmentally do...
NEDD4L                0.016   neural precursor cell expressed, developmentally do...
NEDD4L                0.016   neural precursor cell expressed, developmentally do...
NEDD4L                0.016   neural precursor cell expressed, developmentally do...
SMURF1                0.016   Smad ubiquitination regulatory factor 1 isoform 1 [H...
SMURF1                0.016   Smad ubiquitination regulatory factor 1 isoform 2 [H...
SMURF2                0.016   SMAD specific E3 ubiquitin protein ligase 2 
HECW2                 0.016   HECT, C2 and WW domain containing E3 ubiquitin prote...
NEDD4                 0.015   neural precursor cell expressed, developmentally do...
NEDD4                 0.015   neural precursor cell expressed, developmentally do...
HECW1                 0.015   NEDD4-like ubiquitin-protein ligase 1 
ITCH                  0.015   itchy homolog E3 ubiquitin protein ligase 
UBE3C                 0.013   ubiquitin protein ligase E3C 
HERC1                 0.013   guanine nucleotide exchange factor p532 
HERC2                 0.013   hect domain and RLD 2 
HECTD3                0.012   HECT domain containing 3 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press