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Search of human proteins with 51173755
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|51173755 zinc finger, matrin type 5 [Homo sapiens]
(170 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|51173755 zinc finger, matrin type 5 [Homo sapiens] 367 e-102
gi|9506863 zinc finger, matrin type 5 [Homo sapiens] 367 e-102
gi|4507961 zinc finger protein 36, C3H type, homolog [Homo sapiens] 38 0.004
gi|21361376 splicing factor 3a, subunit 2 [Homo sapiens] 34 0.069
gi|116008442 zinc finger CCCH-type containing 13 [Homo sapiens] 34 0.069
gi|116284396 myosin, heavy chain 14 isoform 1 [Homo sapiens] 33 0.091
gi|116284394 myosin, heavy chain 14 isoform 2 [Homo sapiens] 33 0.091
gi|224831241 myosin, heavy chain 14 isoform 3 [Homo sapiens] 33 0.091
gi|133925795 zinc finger, CCCH-type with G patch domain isoform ... 33 0.091
gi|133925793 zinc finger, CCCH-type with G patch domain isoform ... 33 0.091
gi|133925791 zinc finger, CCCH-type with G patch domain isoform ... 33 0.091
gi|111118994 brain-specific angiogenesis inhibitor 1 precursor [... 33 0.12
gi|39777586 DEAH (Asp-Glu-Ala-Asp/His) box polypeptide 57 [Homo ... 33 0.12
gi|126723060 zinc finger CCCH-type containing 4 [Homo sapiens] 33 0.15
gi|118150660 erythropoietin 4 immediate early response [Homo sap... 33 0.15
gi|31377595 zinc finger CCCH-type containing 18 [Homo sapiens] 32 0.20
gi|25777671 protein phosphatase 1, regulatory subunit 10 [Homo s... 32 0.26
gi|31543452 PX domain containing serine/threonine kinase [Homo s... 32 0.34
gi|148539870 histone deacetylase 7 isoform d [Homo sapiens] 31 0.45
gi|169234807 histone deacetylase 7 isoform a [Homo sapiens] 31 0.45
gi|4507127 small nuclear ribonucleoprotein polypeptide C [Homo s... 31 0.45
gi|4502359 brain-specific angiogenesis inhibitor 3 [Homo sapiens] 31 0.45
gi|138175817 zinc finger protein 236 [Homo sapiens] 31 0.45
gi|167234422 hematopoietic cell-specific Lyn substrate 1 [Homo s... 31 0.59
gi|15812178 zinc finger protein 36, C3H type-like 2 [Homo sapiens] 30 0.77
gi|31652264 RNA binding motif protein 26 [Homo sapiens] 30 0.77
gi|51702526 Wiskott-Aldrich syndrome gene-like protein [Homo sap... 30 1.0
gi|239756899 PREDICTED: hypothetical protein [Homo sapiens] 30 1.0
gi|113427491 PREDICTED: hypothetical protein [Homo sapiens] 30 1.0
gi|239745902 PREDICTED: hypothetical protein [Homo sapiens] 30 1.0
>gi|51173755 zinc finger, matrin type 5 [Homo sapiens]
Length = 170
Score = 367 bits (942), Expect = e-102
Identities = 170/170 (100%), Positives = 170/170 (100%)
Query: 1 MGKRYFCDYCDRSFQDNLHNRKKHLNGLQHLKAKKVWYDMFRDAAAILLDEQNKRPCRKF 60
MGKRYFCDYCDRSFQDNLHNRKKHLNGLQHLKAKKVWYDMFRDAAAILLDEQNKRPCRKF
Sbjct: 1 MGKRYFCDYCDRSFQDNLHNRKKHLNGLQHLKAKKVWYDMFRDAAAILLDEQNKRPCRKF 60
Query: 61 LLTGQCDFGSNCRFSHMSERDLQELSIQVEEERRAREWLLDAPELPEGHLEDWLEKRAKR 120
LLTGQCDFGSNCRFSHMSERDLQELSIQVEEERRAREWLLDAPELPEGHLEDWLEKRAKR
Sbjct: 61 LLTGQCDFGSNCRFSHMSERDLQELSIQVEEERRAREWLLDAPELPEGHLEDWLEKRAKR 120
Query: 121 LSSAPSSRAEPIRTTVFQYPVGWPPVQELPPSLRAPPPGGWPLQPRVQWG 170
LSSAPSSRAEPIRTTVFQYPVGWPPVQELPPSLRAPPPGGWPLQPRVQWG
Sbjct: 121 LSSAPSSRAEPIRTTVFQYPVGWPPVQELPPSLRAPPPGGWPLQPRVQWG 170
>gi|9506863 zinc finger, matrin type 5 [Homo sapiens]
Length = 170
Score = 367 bits (942), Expect = e-102
Identities = 170/170 (100%), Positives = 170/170 (100%)
Query: 1 MGKRYFCDYCDRSFQDNLHNRKKHLNGLQHLKAKKVWYDMFRDAAAILLDEQNKRPCRKF 60
MGKRYFCDYCDRSFQDNLHNRKKHLNGLQHLKAKKVWYDMFRDAAAILLDEQNKRPCRKF
Sbjct: 1 MGKRYFCDYCDRSFQDNLHNRKKHLNGLQHLKAKKVWYDMFRDAAAILLDEQNKRPCRKF 60
Query: 61 LLTGQCDFGSNCRFSHMSERDLQELSIQVEEERRAREWLLDAPELPEGHLEDWLEKRAKR 120
LLTGQCDFGSNCRFSHMSERDLQELSIQVEEERRAREWLLDAPELPEGHLEDWLEKRAKR
Sbjct: 61 LLTGQCDFGSNCRFSHMSERDLQELSIQVEEERRAREWLLDAPELPEGHLEDWLEKRAKR 120
Query: 121 LSSAPSSRAEPIRTTVFQYPVGWPPVQELPPSLRAPPPGGWPLQPRVQWG 170
LSSAPSSRAEPIRTTVFQYPVGWPPVQELPPSLRAPPPGGWPLQPRVQWG
Sbjct: 121 LSSAPSSRAEPIRTTVFQYPVGWPPVQELPPSLRAPPPGGWPLQPRVQWG 170
>gi|4507961 zinc finger protein 36, C3H type, homolog [Homo sapiens]
Length = 326
Score = 38.1 bits (87), Expect = 0.004
Identities = 33/123 (26%), Positives = 41/123 (33%), Gaps = 32/123 (26%)
Query: 49 LDEQNKRP------CRKFLLTGQCDFGSNCRFSHMSERDLQELSIQVEEERRAREWLLDA 102
L + N+ P C KF L G+C +GS C F H DL +
Sbjct: 133 LRQANRHPKYKTELCHKFYLQGRCPYGSRCHFIHNPSEDL-----AAPGHPPVLRQSISF 187
Query: 103 PELPEGHLEDWLEKRAKRLSSAPSSRAEPIRTTVFQYPVGWPPVQELPPSLRAPPPGGWP 162
LP G +R S P A P ++ PS PPPG P
Sbjct: 188 SGLPSG----------RRTSPPPPGLAGPSLSS-----------SSFSPSSSPPPPGDLP 226
Query: 163 LQP 165
L P
Sbjct: 227 LSP 229
Score = 29.3 bits (64), Expect = 1.7
Identities = 9/20 (45%), Positives = 15/20 (75%)
Query: 57 CRKFLLTGQCDFGSNCRFSH 76
CR F +G+C +G+ C+F+H
Sbjct: 109 CRTFSESGRCRYGAKCQFAH 128
>gi|21361376 splicing factor 3a, subunit 2 [Homo sapiens]
Length = 464
Score = 33.9 bits (76), Expect = 0.069
Identities = 15/24 (62%), Positives = 15/24 (62%)
Query: 142 GWPPVQELPPSLRAPPPGGWPLQP 165
G PP LP SL PPPGG PL P
Sbjct: 240 GLPPRPPLPESLPPPPPGGLPLPP 263
>gi|116008442 zinc finger CCCH-type containing 13 [Homo sapiens]
Length = 1564
Score = 33.9 bits (76), Expect = 0.069
Identities = 19/72 (26%), Positives = 31/72 (43%), Gaps = 10/72 (13%)
Query: 57 CRKFLLTGQCDFGSNCRFSHMSERDLQELSIQVEEERRAREWLLDAPELPEGHLEDWLEK 116
CR +L TG C +G+ CRF H + S +PE P G L + ++
Sbjct: 42 CRNWLKTGNCLYGNTCRFVHGPSPRGKGYSSNYRR----------SPERPTGDLRERMKN 91
Query: 117 RAKRLSSAPSSR 128
+ + + + P R
Sbjct: 92 KRQDVDTEPQKR 103
>gi|116284396 myosin, heavy chain 14 isoform 1 [Homo sapiens]
Length = 2003
Score = 33.5 bits (75), Expect = 0.091
Identities = 25/81 (30%), Positives = 44/81 (54%), Gaps = 10/81 (12%)
Query: 50 DEQNKRPCRKFLLTGQCDFGSNCRFSHMSERDLQELSIQVEEERRAREWLLDAPELPEGH 109
+EQ ++ R+ +L+G + +E+ L+E+ +QVEEERR + L D +L +G+
Sbjct: 1852 EEQLEQETRERILSG--------KLVRRAEKRLKEVVLQVEEERRVADQLRD--QLEKGN 1901
Query: 110 LEDWLEKRAKRLSSAPSSRAE 130
L KR + +SRA+
Sbjct: 1902 LRVKQLKRQLEEAEEEASRAQ 1922
>gi|116284394 myosin, heavy chain 14 isoform 2 [Homo sapiens]
Length = 1995
Score = 33.5 bits (75), Expect = 0.091
Identities = 25/81 (30%), Positives = 44/81 (54%), Gaps = 10/81 (12%)
Query: 50 DEQNKRPCRKFLLTGQCDFGSNCRFSHMSERDLQELSIQVEEERRAREWLLDAPELPEGH 109
+EQ ++ R+ +L+G + +E+ L+E+ +QVEEERR + L D +L +G+
Sbjct: 1844 EEQLEQETRERILSG--------KLVRRAEKRLKEVVLQVEEERRVADQLRD--QLEKGN 1893
Query: 110 LEDWLEKRAKRLSSAPSSRAE 130
L KR + +SRA+
Sbjct: 1894 LRVKQLKRQLEEAEEEASRAQ 1914
>gi|224831241 myosin, heavy chain 14 isoform 3 [Homo sapiens]
Length = 2036
Score = 33.5 bits (75), Expect = 0.091
Identities = 25/81 (30%), Positives = 44/81 (54%), Gaps = 10/81 (12%)
Query: 50 DEQNKRPCRKFLLTGQCDFGSNCRFSHMSERDLQELSIQVEEERRAREWLLDAPELPEGH 109
+EQ ++ R+ +L+G + +E+ L+E+ +QVEEERR + L D +L +G+
Sbjct: 1885 EEQLEQETRERILSG--------KLVRRAEKRLKEVVLQVEEERRVADQLRD--QLEKGN 1934
Query: 110 LEDWLEKRAKRLSSAPSSRAE 130
L KR + +SRA+
Sbjct: 1935 LRVKQLKRQLEEAEEEASRAQ 1955
>gi|133925795 zinc finger, CCCH-type with G patch domain isoform c
[Homo sapiens]
Length = 511
Score = 33.5 bits (75), Expect = 0.091
Identities = 16/31 (51%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 55 RPCRKFLLTGQCDFGSNCRFSHMSERDLQEL 85
+PC F L G+C F NCRFSH L EL
Sbjct: 178 KPC-PFFLEGKCRFKENCRFSHGQVVSLDEL 207
>gi|133925793 zinc finger, CCCH-type with G patch domain isoform a
[Homo sapiens]
Length = 531
Score = 33.5 bits (75), Expect = 0.091
Identities = 16/31 (51%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 55 RPCRKFLLTGQCDFGSNCRFSHMSERDLQEL 85
+PC F L G+C F NCRFSH L EL
Sbjct: 178 KPC-PFFLEGKCRFKENCRFSHGQVVSLDEL 207
>gi|133925791 zinc finger, CCCH-type with G patch domain isoform c
[Homo sapiens]
Length = 511
Score = 33.5 bits (75), Expect = 0.091
Identities = 16/31 (51%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 55 RPCRKFLLTGQCDFGSNCRFSHMSERDLQEL 85
+PC F L G+C F NCRFSH L EL
Sbjct: 178 KPC-PFFLEGKCRFKENCRFSHGQVVSLDEL 207
>gi|111118994 brain-specific angiogenesis inhibitor 1 precursor [Homo
sapiens]
Length = 1584
Score = 33.1 bits (74), Expect = 0.12
Identities = 21/61 (34%), Positives = 27/61 (44%), Gaps = 4/61 (6%)
Query: 109 HLEDWLEKRAKRLSSAPSS----RAEPIRTTVFQYPVGWPPVQELPPSLRAPPPGGWPLQ 164
H++ + R LS+AP + R+ P R P PP Q PP PPP PL
Sbjct: 1368 HIDQMPQTRLIHLSTAPEASLPARSPPSRQPPSGGPPEAPPAQPPPPPPPPPPPPQQPLP 1427
Query: 165 P 165
P
Sbjct: 1428 P 1428
>gi|39777586 DEAH (Asp-Glu-Ala-Asp/His) box polypeptide 57 [Homo
sapiens]
Length = 1386
Score = 33.1 bits (74), Expect = 0.12
Identities = 13/26 (50%), Positives = 15/26 (57%)
Query: 51 EQNKRPCRKFLLTGQCDFGSNCRFSH 76
++N KF L G C FGS CRF H
Sbjct: 298 QENSLEICKFYLKGNCKFGSKCRFKH 323
>gi|126723060 zinc finger CCCH-type containing 4 [Homo sapiens]
Length = 1303
Score = 32.7 bits (73), Expect = 0.15
Identities = 30/110 (27%), Positives = 43/110 (39%), Gaps = 19/110 (17%)
Query: 56 PCRKFLLTGQCDFGSNCRFSHMSERDLQELSIQVEEERRAREWLLDAPELPEGHLEDWLE 115
PC+ + TG C G +C FSH EE R + +L A + G ++
Sbjct: 447 PCKLYHTTGNCINGDDCMFSH---------DPLTEETRELLDKML-ADDAEAGAEDEKEV 496
Query: 116 KRAKRLSSAPSSRAEPIRTTVFQYPVGWPPVQELPPSLRAP-PPGGWPLQ 164
+ K+ P + P VG P PP +AP P G P+Q
Sbjct: 497 EELKKQGINPLPKPPP--------GVGLLPTPPRPPGPQAPTSPNGRPMQ 538
Score = 28.5 bits (62), Expect = 2.9
Identities = 11/27 (40%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Query: 50 DEQNKRPCRKFLLTGQCDFGSNCRFSH 76
D++ K C K+ + G+C +G +C FSH
Sbjct: 389 DKKGKVIC-KYFVEGRCTWGDHCNFSH 414
>gi|118150660 erythropoietin 4 immediate early response [Homo
sapiens]
Length = 426
Score = 32.7 bits (73), Expect = 0.15
Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 11/73 (15%)
Query: 60 FLLTGQCDFGSNCRFSH--MSERDLQELSIQVEEERRAREWLLDAPELPEGHLEDWLEKR 117
F GQC G C+FSH ER ++ S+ ++ AR+ EL + +++W EK+
Sbjct: 107 FFKQGQCTKGDKCKFSHDLTLERKCEKRSVYID----ARD-----EELEKDTMDNWDEKK 157
Query: 118 AKRLSSAPSSRAE 130
+ + + AE
Sbjct: 158 LEEVVNKKHGEAE 170
>gi|31377595 zinc finger CCCH-type containing 18 [Homo sapiens]
Length = 953
Score = 32.3 bits (72), Expect = 0.20
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 55 RPCRKFLLTGQCDFGSNCRFSHMSERDLQELSI 87
RP +F + G C +G NCRF H D S+
Sbjct: 221 RPTCRFFMKGNCTWGMNCRFIHPGVNDKGNYSL 253
>gi|25777671 protein phosphatase 1, regulatory subunit 10 [Homo
sapiens]
Length = 940
Score = 32.0 bits (71), Expect = 0.26
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 50 DEQNKRPCRKFLLTGQCDFGSNCRFSH 76
D N+ CR F++ G C + +NC F H
Sbjct: 905 DMSNRPVCRHFMMKGNCRYENNCAFYH 931
>gi|31543452 PX domain containing serine/threonine kinase [Homo
sapiens]
Length = 578
Score = 31.6 bits (70), Expect = 0.34
Identities = 26/93 (27%), Positives = 36/93 (38%), Gaps = 3/93 (3%)
Query: 76 HMSERDLQELSIQVEEERRAREWLLDAPELPEGHLEDWLEKRAKRLSS---APSSRAEPI 132
H R + S EE R + +L + LE+ E AK +S A S + P+
Sbjct: 438 HQHRRLTRAQSHHGSEEERKKRKILARKKSKRSALENSEEHSAKYSNSNNSAGSGASSPL 497
Query: 133 RTTVFQYPVGWPPVQELPPSLRAPPPGGWPLQP 165
+ P + LPP PPP PL P
Sbjct: 498 TSPSSPTPPSTSGISALPPPPPPPPPPAAPLPP 530
>gi|148539870 histone deacetylase 7 isoform d [Homo sapiens]
Length = 954
Score = 31.2 bits (69), Expect = 0.45
Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Query: 139 YPVGWPPVQELPPSLRAPPPGGWPLQPRVQ 168
+P+ + LPPS APPP G P+QPR++
Sbjct: 353 WPLSRTRSEPLPPSATAPPPPG-PMQPRLE 381
>gi|169234807 histone deacetylase 7 isoform a [Homo sapiens]
Length = 991
Score = 31.2 bits (69), Expect = 0.45
Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Query: 139 YPVGWPPVQELPPSLRAPPPGGWPLQPRVQ 168
+P+ + LPPS APPP G P+QPR++
Sbjct: 390 WPLSRTRSEPLPPSATAPPPPG-PMQPRLE 418
>gi|4507127 small nuclear ribonucleoprotein polypeptide C [Homo
sapiens]
Length = 159
Score = 31.2 bits (69), Expect = 0.45
Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 4 RYFCDYCDRSF-QDNLHNRKKHLNGLQHLKAKKVWYDMFRDAAA 46
+++CDYCD D+ RK H +G +H + K +Y + + A
Sbjct: 3 KFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDYYQKWMEEQA 46
>gi|4502359 brain-specific angiogenesis inhibitor 3 [Homo sapiens]
Length = 1522
Score = 31.2 bits (69), Expect = 0.45
Identities = 14/35 (40%), Positives = 18/35 (51%)
Query: 9 YCDRSFQDNLHNRKKHLNGLQHLKAKKVWYDMFRD 43
Y D F+ +H RK+H+ Q L K D FRD
Sbjct: 1419 YSDLDFEKVMHTRKRHMELFQELNQKFQTLDRFRD 1453
>gi|138175817 zinc finger protein 236 [Homo sapiens]
Length = 1845
Score = 31.2 bits (69), Expect = 0.45
Identities = 38/168 (22%), Positives = 73/168 (43%), Gaps = 23/168 (13%)
Query: 5 YFCDYCDRSFQDNLHNRKKHLNGLQHLKAKKVWYDMFRDAAAI---LLDEQNKRPCRKFL 61
Y C YC ++F+ +L N KKH+ ++ A+++ + AA+I +D+Q+ + +
Sbjct: 741 YMCPYCQKTFKTSL-NCKKHMKTHRYELAQQL--QQHQQAASIDDSTVDQQSMQASTQMQ 797
Query: 62 LTGQCD----FGSNCRFSHMSERDLQELSIQVEEERRAREWLLD-----------APELP 106
+ + D + + DL+ + EE + L D AP+ P
Sbjct: 798 VEIESDELPQTAEVVAANPEAMLDLEPQHVVGTEEAGLGQQLADQPLEADEDGFVAPQDP 857
Query: 107 -EGHLEDWLEKRAKRLSSAPSSRAEPIRTT-VFQYPVGWPPVQELPPS 152
GH++ + E+ + S P+ + T + +PPVQ+L S
Sbjct: 858 LRGHVDQFEEQSPAQQSFEPAGLPQGFTVTDTYHQQPQFPPVQQLQDS 905
>gi|167234422 hematopoietic cell-specific Lyn substrate 1 [Homo
sapiens]
Length = 486
Score = 30.8 bits (68), Expect = 0.59
Identities = 34/121 (28%), Positives = 58/121 (47%), Gaps = 25/121 (20%)
Query: 69 GSNCRFSHMSE----RDLQELSIQVEEERRAREWLLD-APELPEGHLEDWLEKRA----- 118
G +F M+E R+ +E + QV ++ R+ + +PE P+ + +E+ A
Sbjct: 237 GLKAKFESMAEEKRKREEEEKAQQVARRQQERKAVTKRSPEAPQPVIA--MEEPAVPAPL 294
Query: 119 -KRLSSA--------PSSRAEPIRTTVFQYPVGWPPVQELPPSLRAPPPGGWPLQPRVQW 169
K++SS PSS +EP+RT+ ++PV P+++ P PP L PR
Sbjct: 295 PKKISSEAWPPVGTPPSSESEPVRTS-REHPVPLLPIRQTLPEDNEEPPA---LPPRTLE 350
Query: 170 G 170
G
Sbjct: 351 G 351
>gi|15812178 zinc finger protein 36, C3H type-like 2 [Homo sapiens]
Length = 494
Score = 30.4 bits (67), Expect = 0.77
Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 8/66 (12%)
Query: 11 DRSFQDNLHNRKKHLNGLQHLKAKKVWYDMFRDAAAILLDEQNKRPCRKFLLTGQCDFGS 70
DRSF +N +R +HL LQ + + I CR F +G C +G
Sbjct: 121 DRSFSEN-GDRSQHLLHLQQQQKGG-------GGSQINSTRYKTELCRPFEESGTCKYGE 172
Query: 71 NCRFSH 76
C+F+H
Sbjct: 173 KCQFAH 178
>gi|31652264 RNA binding motif protein 26 [Homo sapiens]
Length = 980
Score = 30.4 bits (67), Expect = 0.77
Identities = 34/116 (29%), Positives = 43/116 (37%), Gaps = 21/116 (18%)
Query: 54 KRPCRKFLLTGQCDFGSNCRFSHMSERDLQELSIQVEEERRAREWLLDA-PELPEGHLED 112
K+ CR + G C G C F H S+ + VE+ A P + EG
Sbjct: 291 KKRCRDYDEKGFCMRGDMCPFDHGSD------PVVVEDVNLPGMLPFPAQPPVVEGPPPP 344
Query: 113 WLEKRAKRLSSAPSSRAEPIRTTVFQYPVGWPPVQELPPSL---RAPPPGGWPLQP 165
L L+ P + P+ PP LPPSL PPP PLQP
Sbjct: 345 GLPPPPPILTPPPVNLRPPV-----------PPPGPLPPSLPPVTGPPPPLPPLQP 389
>gi|51702526 Wiskott-Aldrich syndrome gene-like protein [Homo
sapiens]
Length = 505
Score = 30.0 bits (66), Expect = 1.0
Identities = 17/41 (41%), Positives = 19/41 (46%)
Query: 122 SSAPSSRAEPIRTTVFQYPVGWPPVQELPPSLRAPPPGGWP 162
SSAPS P + + PV PP PP PPP G P
Sbjct: 352 SSAPSGPPPPPPSVLGVGPVAPPPPPPPPPPPGPPPPPGLP 392
>gi|239756899 PREDICTED: hypothetical protein [Homo sapiens]
Length = 371
Score = 30.0 bits (66), Expect = 1.0
Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
Query: 122 SSAPSSRAEPIRTTVFQYPVGWPPVQELPPSLRAPP---PGGW 161
S +PS R +R + P PP +L RAPP PGGW
Sbjct: 157 SGSPSPRPRRLRVSGRGSPAQLPPTYQLLGYHRAPPRASPGGW 199
>gi|113427491 PREDICTED: hypothetical protein [Homo sapiens]
Length = 371
Score = 30.0 bits (66), Expect = 1.0
Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
Query: 122 SSAPSSRAEPIRTTVFQYPVGWPPVQELPPSLRAPP---PGGW 161
S +PS R +R + P PP +L RAPP PGGW
Sbjct: 157 SGSPSPRPRRLRVSGRGSPAQLPPTYQLLGYHRAPPRASPGGW 199
>gi|239745902 PREDICTED: hypothetical protein [Homo sapiens]
Length = 371
Score = 30.0 bits (66), Expect = 1.0
Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
Query: 122 SSAPSSRAEPIRTTVFQYPVGWPPVQELPPSLRAPP---PGGW 161
S +PS R +R + P PP +L RAPP PGGW
Sbjct: 157 SGSPSPRPRRLRVSGRGSPAQLPPTYQLLGYHRAPPRASPGGW 199
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.137 0.456
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,205,058
Number of Sequences: 37866
Number of extensions: 412634
Number of successful extensions: 3010
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 68
Number of HSP's that attempted gapping in prelim test: 2840
Number of HSP's gapped (non-prelim): 230
length of query: 170
length of database: 18,247,518
effective HSP length: 95
effective length of query: 75
effective length of database: 14,650,248
effective search space: 1098768600
effective search space used: 1098768600
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.