Guide to the Human Genome
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Name: ZMAT5 Sequence: fasta or formatted (170aa) NCBI GI: 9506863
Description:

zinc finger, matrin type 5

Referenced in:

Capping and Splicing

Other entries for this name:
alt mRNA [170aa] zinc finger, matrin type 5
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.9         10           3
 C cysteine            2.9          5           1
 D aspartate           5.9         10           1
 E glutamate           7.6         13           3
 F phenylalanine       4.1          7           1
 G glycine             5.3          9           2
 H histidine           2.9          5           1
 I isoleucine          1.8          3           1
 K lysine              5.9         10           2
 L leucine            11.2         19           2
 M methionine          1.8          3           1
 N asparagine          2.9          5           1
 P proline             8.8         15           3
 Q glutamine           5.9         10           1
 R arginine           10.0         17           2
 S serine              5.9         10           2
 T threonine           1.8          3           2
 V valine              3.5          6           1
 W tryptophan          3.5          6           1
 Y tyrosine            2.4          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   zinc finger, matrin type 5 
ZMAT5                 1.000   zinc finger, matrin type 5 
ZFP36                 0.038   zinc finger protein 36, C3H type, homolog 
SF3A2                 0.026   splicing factor 3a, subunit 2 
ZC3H13                0.026   zinc finger CCCH-type containing 13 
MYH14                 0.023   myosin, heavy chain 14 isoform 1 
MYH14                 0.023   myosin, heavy chain 14 isoform 2 
MYH14                 0.023   myosin, heavy chain 14 isoform 3 
ZGPAT                 0.023   zinc finger, CCCH-type with G patch domain isoform ...
ZGPAT                 0.023   zinc finger, CCCH-type with G patch domain isoform ...
ZGPAT                 0.023   zinc finger, CCCH-type with G patch domain isoform ...
BAI1                  0.023   brain-specific angiogenesis inhibitor 1 precursor [...
DHX57                 0.023   DEAH (Asp-Glu-Ala-Asp/His) box polypeptide 57 
ZC3H4                 0.023   zinc finger CCCH-type containing 4 
ZC3H15                0.023   erythropoietin 4 immediate early response 
ZC3H18                0.020   zinc finger CCCH-type containing 18 
PPP1R10               0.020   protein phosphatase 1, regulatory subunit 10 
PXK                   0.020   PX domain containing serine/threonine kinase 
HDAC7                 0.018   histone deacetylase 7 isoform d 
HDAC7                 0.018   histone deacetylase 7 isoform a 
SNRPC                 0.018   small nuclear ribonucleoprotein polypeptide C 
BAI3                  0.018   brain-specific angiogenesis inhibitor 3 
ZNF236                0.018   zinc finger protein 236 
HCLS1                 0.018   hematopoietic cell-specific Lyn substrate 1 
ZFP36L2               0.015   zinc finger protein 36, C3H type-like 2 
RBM26                 0.015   RNA binding motif protein 26 
WASL                  0.015   Wiskott-Aldrich syndrome gene-like protein 
LOC729417             0.015   PREDICTED: hypothetical protein 
LOC729417             0.015   PREDICTED: hypothetical protein 
LOC729417             0.015   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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