Guide to the Human Genome
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Name: ZGPAT Sequence: fasta or formatted (531aa) NCBI GI: 133925793
Description:

zinc finger, CCCH-type with G patch domain isoform a

Referenced in:

RNA-binding Proteins
Zinc Finger Proteins

Other entries for this name:
alt prot [511aa] zinc finger, CCCH-type with G patch domain isoform c
alt prot [511aa] zinc finger, CCCH-type with G patch domain isoform c
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.9         63           3
 C cysteine            1.5          8           1
 D aspartate           5.5         29           1
 E glutamate           9.8         52           4
 F phenylalanine       2.4         13           2
 G glycine             9.4         50           2
 H histidine           2.1         11           1
 I isoleucine          1.7          9           1
 K lysine              4.7         25           2
 L leucine             9.8         52           3
 M methionine          0.9          5           1
 N asparagine          1.3          7           1
 P proline             4.1         22           2
 Q glutamine           6.0         32           2
 R arginine            7.3         39           2
 S serine              8.7         46           2
 T threonine           4.3         23           1
 V valine              5.6         30           2
 W tryptophan          0.6          3           1
 Y tyrosine            2.3         12           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   zinc finger, CCCH-type with G patch domain isoform ... 
ZGPAT                 0.953   zinc finger, CCCH-type with G patch domain isoform ...
ZGPAT                 0.953   zinc finger, CCCH-type with G patch domain isoform ...
TFIP11                0.029   tuftelin interacting protein 11 
TFIP11                0.029   tuftelin interacting protein 11 
SMNDC1                0.022   survival motor neuron domain containing 1 
RBM10                 0.016   RNA binding motif protein 10 isoform 1 
RBM10                 0.016   RNA binding motif protein 10 isoform 2 
GPATCH2               0.015   G patch domain containing 2 
GPATCH8               0.014   G patch domain containing 8 
HNRNPU                0.013   heterogeneous nuclear ribonucleoprotein U isoform b ...
HNRNPU                0.013   heterogeneous nuclear ribonucleoprotein U isoform a ...
MYH7B                 0.013   myosin, heavy polypeptide 7B, cardiac muscle, beta ...
CGREF1                0.013   cell growth regulator with EF-hand domain 1 
SON                   0.013   SON DNA-binding protein isoform F 
CCDC13                0.013   coiled-coil domain containing 13 
DDRGK1                0.012   DDRGK domain containing 1 
NEFM                  0.012   neurofilament, medium polypeptide 150kDa isoform 1 ...
NEFM                  0.012   neurofilament, medium polypeptide 150kDa isoform 2 ...
IQSEC3                0.012   IQ motif and Sec7 domain 3 
AEBP2                 0.012   AE binding protein 2 isoform b 
AEBP2                 0.012   AE binding protein 2 isoform a 
RILP                  0.012   Rab interacting lysosomal protein 
PPM1E                 0.011   protein phosphatase 1E 
SFRS4                 0.011   splicing factor, arginine/serine-rich 4 
LOC283685             0.011   PREDICTED: golgi autoantigen, golgin subfamily a-li...
DEF6                  0.011   differentially expressed in FDCP 6 homolog 
AKAP13                0.011   A-kinase anchor protein 13 isoform 1 
AKAP13                0.011   A-kinase anchor protein 13 isoform 3 
AKAP13                0.011   A-kinase anchor protein 13 isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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