Guide to the Human Genome
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Name: C1orf125 Sequence: fasta or formatted (938aa) NCBI GI: 51093834
Description:

hypothetical protein LOC126859 isoform 2

Not currently referenced in the text

Other entries for this name:
alt prot {1012aa} hypothetical protein LOC126859 isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.2         39           2
 C cysteine            1.0          9           2
 D aspartate           5.3         50           2
 E glutamate          11.2        105           4
 F phenylalanine       2.5         23           2
 G glycine             3.2         30           1
 H histidine           3.2         30           2
 I isoleucine          6.1         57           2
 K lysine              9.9         93           2
 L leucine            12.4        116           3
 M methionine          2.8         26           1
 N asparagine          5.1         48           2
 P proline             3.4         32           2
 Q glutamine           4.4         41           2
 R arginine            4.3         40           2
 S serine              6.4         60           2
 T threonine           5.2         49           2
 V valine              5.4         51           1
 W tryptophan          1.2         11           1
 Y tyrosine            3.0         28           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC126859 isoform 2 
C1orf125              0.872   hypothetical protein LOC126859 isoform 1 
CENPE                 0.020   centromere protein E 
CLIP1                 0.018   restin isoform a 
CCDC39                0.016   coiled-coil domain containing 39 
LOC283767             0.016   golgi autoantigen, golgin subfamily a-like 
WDR87                 0.015   NYD-SP11 protein 
LOC440243             0.015   PREDICTED: Putative golgin subfamily A member 6-lik...
CDC42BPB              0.015   CDC42-binding protein kinase beta 
GOLGB1                0.015   golgi autoantigen, golgin subfamily b, macrogolgin ...
CCDC41                0.015   NY-REN-58 antigen 
CCDC41                0.015   NY-REN-58 antigen 
EEA1                  0.015   early endosome antigen 1, 162kD 
GOLGA4                0.015   golgi autoantigen, golgin subfamily a, 4 
LOC645202             0.014   PREDICTED: hypothetical protein LOC645202 
LOC727832             0.014   golgi autoantigen, golgin subfamily a-like 
TRIP11                0.014   thyroid hormone receptor interactor 11 
CCDC136               0.014   coiled-coil domain containing 136 
MYST4                 0.014   MYST histone acetyltransferase (monocytic leukemia)...
KTN1                  0.013   kinectin 1 isoform a 
KTN1                  0.013   kinectin 1 isoform a 
CLIP1                 0.013   restin isoform b 
MYH10                 0.013   myosin, heavy polypeptide 10, non-muscle 
ATRX                  0.013   transcriptional regulator ATRX isoform 2 
ATRX                  0.013   transcriptional regulator ATRX isoform 1 
LOC283685             0.013   PREDICTED: golgi autoantigen, golgin subfamily a-li...
CEP110                0.013   centrosomal protein 110kDa 
KTN1                  0.012   kinectin 1 isoform b 
LOC400352             0.012   PREDICTED: similar to Putative golgin subfamily A m...
LOC100132816          0.012   PREDICTED: similar to Putative golgin subfamily A m...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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