Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 50541950
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|50541950 golgi autoantigen, golgin subfamily a, 7 [Homo
sapiens]
(137 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|50541946 golgi autoantigen, golgin subfamily a, 7 [Homo sapiens] 278 1e-75
gi|50541950 golgi autoantigen, golgin subfamily a, 7 [Homo sapiens] 278 1e-75
gi|58219040 golgi autoantigen, golgin subfamily a, 7B [Homo sapi... 214 1e-56
gi|154759293 cysteine-rich hydrophobic domain 1 [Homo sapiens] 34 0.033
gi|6912276 cysteine-rich hydrophobic domain 2 [Homo sapiens] 33 0.096
gi|226246537 zinc finger protein 407 isoform 3 [Homo sapiens] 30 0.48
gi|226246535 zinc finger protein 407 isoform 2 [Homo sapiens] 30 0.48
gi|134133288 zinc finger protein 407 isoform 1 [Homo sapiens] 30 0.48
gi|148612875 RUN and TBC1 domain containing 2 isoform 4 [Homo sa... 30 0.81
gi|148612840 RUN and TBC1 domain containing 2 isoform 3 [Homo sa... 30 0.81
gi|90577164 RUN and TBC1 domain containing 2 isoform 2 [Homo sap... 30 0.81
gi|90577167 RUN and TBC1 domain containing 2 isoform 1 [Homo sap... 30 0.81
gi|89886470 hypothetical protein LOC84960 [Homo sapiens] 28 1.8
gi|210032790 hypothetical protein LOC27146 [Homo sapiens] 28 2.4
gi|156151445 acyl-CoA synthetase family member 2 [Homo sapiens] 27 4.0
gi|17998551 serine (or cysteine) proteinase inhibitor, clade B (... 27 4.0
gi|42794625 alpha-methylacyl-CoA racemase isoform 1 [Homo sapiens] 27 5.3
gi|90093355 jumonji C domain containing histone demethylase 1 ho... 27 5.3
gi|148612829 RUN and TBC1 domain containing 1 isoform 2 [Homo sa... 27 5.3
gi|148612795 RUN and TBC1 domain containing 1 isoform 1 [Homo sa... 27 5.3
gi|219842319 Bardet-Biedl syndrome 2 protein [Homo sapiens] 27 5.3
gi|119466532 laminin alpha 2 subunit isoform b precursor [Homo s... 26 9.0
gi|28559088 laminin alpha 2 subunit isoform a precursor [Homo sa... 26 9.0
gi|114199473 vacuolar protein sorting 41 isoform 2 [Homo sapiens] 26 9.0
gi|114199475 vacuolar protein sorting 41 isoform 1 [Homo sapiens] 26 9.0
gi|89903023 hypothetical protein LOC113177 isoform 3 [Homo sapiens] 26 9.0
gi|89903025 hypothetical protein LOC113177 isoform 1 [Homo sapiens] 26 9.0
>gi|50541946 golgi autoantigen, golgin subfamily a, 7 [Homo sapiens]
Length = 137
Score = 278 bits (710), Expect = 1e-75
Identities = 137/137 (100%), Positives = 137/137 (100%)
Query: 1 MRPQQAPVSGKVFIQRDYSSGTRCQFQTKFPAELENRIDRQQFEETVRTLNNLYAEAEKL 60
MRPQQAPVSGKVFIQRDYSSGTRCQFQTKFPAELENRIDRQQFEETVRTLNNLYAEAEKL
Sbjct: 1 MRPQQAPVSGKVFIQRDYSSGTRCQFQTKFPAELENRIDRQQFEETVRTLNNLYAEAEKL 60
Query: 61 GGQSYLEGCLACLTAYTIFLCMETHYEKVLKKVSKYIQEQNEKIYAPQGLLLTDPIERGL 120
GGQSYLEGCLACLTAYTIFLCMETHYEKVLKKVSKYIQEQNEKIYAPQGLLLTDPIERGL
Sbjct: 61 GGQSYLEGCLACLTAYTIFLCMETHYEKVLKKVSKYIQEQNEKIYAPQGLLLTDPIERGL 120
Query: 121 RVIEITIYEDRGMSSGR 137
RVIEITIYEDRGMSSGR
Sbjct: 121 RVIEITIYEDRGMSSGR 137
>gi|50541950 golgi autoantigen, golgin subfamily a, 7 [Homo sapiens]
Length = 137
Score = 278 bits (710), Expect = 1e-75
Identities = 137/137 (100%), Positives = 137/137 (100%)
Query: 1 MRPQQAPVSGKVFIQRDYSSGTRCQFQTKFPAELENRIDRQQFEETVRTLNNLYAEAEKL 60
MRPQQAPVSGKVFIQRDYSSGTRCQFQTKFPAELENRIDRQQFEETVRTLNNLYAEAEKL
Sbjct: 1 MRPQQAPVSGKVFIQRDYSSGTRCQFQTKFPAELENRIDRQQFEETVRTLNNLYAEAEKL 60
Query: 61 GGQSYLEGCLACLTAYTIFLCMETHYEKVLKKVSKYIQEQNEKIYAPQGLLLTDPIERGL 120
GGQSYLEGCLACLTAYTIFLCMETHYEKVLKKVSKYIQEQNEKIYAPQGLLLTDPIERGL
Sbjct: 61 GGQSYLEGCLACLTAYTIFLCMETHYEKVLKKVSKYIQEQNEKIYAPQGLLLTDPIERGL 120
Query: 121 RVIEITIYEDRGMSSGR 137
RVIEITIYEDRGMSSGR
Sbjct: 121 RVIEITIYEDRGMSSGR 137
>gi|58219040 golgi autoantigen, golgin subfamily a, 7B [Homo
sapiens]
Length = 167
Score = 214 bits (546), Expect = 1e-56
Identities = 104/133 (78%), Positives = 119/133 (89%), Gaps = 1/133 (0%)
Query: 4 QQAPVSGKVFIQRDYSSGTRCQFQTKFPAELENRIDRQQFEETVRTLNNLYAEAEKLGGQ 63
+ A ++ KVFIQRDYS GT CQFQTKFP EL++RI+RQ FEETV+TLN YAEAEK+GG
Sbjct: 13 RSASLATKVFIQRDYSDGTICQFQTKFPPELDSRIERQLFEETVKTLNGFYAEAEKIGGS 72
Query: 64 SYLEGCLACLTAYTIFLCMETHYEKVLKKVSKYIQEQNEKIYAPQGLLLTDPIERGLRVI 123
SYLEGCLAC TAY IFLCMETHYEKVLKK+S+YIQEQNEKI+AP+GLLLTDP+ERG+RVI
Sbjct: 73 SYLEGCLACATAYFIFLCMETHYEKVLKKISRYIQEQNEKIFAPRGLLLTDPVERGMRVI 132
Query: 124 EITIYEDRGMSSG 136
EI+IYEDR SSG
Sbjct: 133 EISIYEDR-CSSG 144
>gi|154759293 cysteine-rich hydrophobic domain 1 [Homo sapiens]
Length = 224
Score = 34.3 bits (77), Expect = 0.033
Identities = 20/89 (22%), Positives = 43/89 (48%), Gaps = 7/89 (7%)
Query: 21 GTRCQFQTKFPAELENRIDRQQFEETVRTLNNLYAEAEKLGGQSYLEGCLACLTAYTIFL 80
G +F T+FP+ L ++ ++F+ ++ +N +A + + L GCL C L
Sbjct: 101 GLSNKFDTEFPSVLTGKVAPEEFKTSIGRVNACLKKALPVNVKWLLCGCLCCCCTLGCSL 160
Query: 81 ----CMETHYEKVLKKVSKYIQEQNEKIY 105
C+ ++ + + K I+ +N ++Y
Sbjct: 161 WPVICLN---KRTRRSIQKLIEWENNRLY 186
>gi|6912276 cysteine-rich hydrophobic domain 2 [Homo sapiens]
Length = 165
Score = 32.7 bits (73), Expect = 0.096
Identities = 16/89 (17%), Positives = 44/89 (49%), Gaps = 7/89 (7%)
Query: 21 GTRCQFQTKFPAELENRIDRQQFEETVRTLNNLYAEAEKLGGQSYLEGCLACLTAYTI-- 78
G +F+++FP+ L ++ ++F+ ++ +N+ + + + L GCL C
Sbjct: 42 GLSNKFESEFPSSLTGKVAPEEFKASINRVNSCLKKNLPVNVRWLLCGCLCCCCTLGCSM 101
Query: 79 --FLCMETHYEKVLKKVSKYIQEQNEKIY 105
+C+ ++ + + K ++ +N ++Y
Sbjct: 102 WPVICLS---KRTRRSIEKLLEWENNRLY 127
>gi|226246537 zinc finger protein 407 isoform 3 [Homo sapiens]
Length = 1660
Score = 30.4 bits (67), Expect = 0.48
Identities = 19/61 (31%), Positives = 35/61 (57%), Gaps = 8/61 (13%)
Query: 50 LNNLYAEAEKL--GGQSYLEGCLACLTAY----TIFLCMETHYEKVLKKVSKYIQEQNEK 103
+ N A E+L GG ++ C+ C + +FL ++ +E++L++V+KYI E E+
Sbjct: 1469 MRNEQASVEELPEGGATFK--CVKCTEPFDSEQNLFLHIKGQHEELLREVNKYIVEDTEQ 1526
Query: 104 I 104
I
Sbjct: 1527 I 1527
>gi|226246535 zinc finger protein 407 isoform 2 [Homo sapiens]
Length = 1815
Score = 30.4 bits (67), Expect = 0.48
Identities = 19/61 (31%), Positives = 35/61 (57%), Gaps = 8/61 (13%)
Query: 50 LNNLYAEAEKL--GGQSYLEGCLACLTAY----TIFLCMETHYEKVLKKVSKYIQEQNEK 103
+ N A E+L GG ++ C+ C + +FL ++ +E++L++V+KYI E E+
Sbjct: 1469 MRNEQASVEELPEGGATFK--CVKCTEPFDSEQNLFLHIKGQHEELLREVNKYIVEDTEQ 1526
Query: 104 I 104
I
Sbjct: 1527 I 1527
>gi|134133288 zinc finger protein 407 isoform 1 [Homo sapiens]
Length = 2248
Score = 30.4 bits (67), Expect = 0.48
Identities = 19/61 (31%), Positives = 35/61 (57%), Gaps = 8/61 (13%)
Query: 50 LNNLYAEAEKL--GGQSYLEGCLACLTAY----TIFLCMETHYEKVLKKVSKYIQEQNEK 103
+ N A E+L GG ++ C+ C + +FL ++ +E++L++V+KYI E E+
Sbjct: 1469 MRNEQASVEELPEGGATFK--CVKCTEPFDSEQNLFLHIKGQHEELLREVNKYIVEDTEQ 1526
Query: 104 I 104
I
Sbjct: 1527 I 1527
>gi|148612875 RUN and TBC1 domain containing 2 isoform 4 [Homo
sapiens]
Length = 1032
Score = 29.6 bits (65), Expect = 0.81
Identities = 13/32 (40%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Query: 86 YEKVLKKVSKYIQEQNEKIYAPQGLLLTDPIE 117
+EKVL K+ Y+ E + K Y + LL+ DP++
Sbjct: 136 FEKVLDKIVHYLVENSSKYYEKEALLM-DPVD 166
>gi|148612840 RUN and TBC1 domain containing 2 isoform 3 [Homo
sapiens]
Length = 1093
Score = 29.6 bits (65), Expect = 0.81
Identities = 13/32 (40%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Query: 86 YEKVLKKVSKYIQEQNEKIYAPQGLLLTDPIE 117
+EKVL K+ Y+ E + K Y + LL+ DP++
Sbjct: 136 FEKVLDKIVHYLVENSSKYYEKEALLM-DPVD 166
>gi|90577164 RUN and TBC1 domain containing 2 isoform 2 [Homo
sapiens]
Length = 1087
Score = 29.6 bits (65), Expect = 0.81
Identities = 13/32 (40%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Query: 86 YEKVLKKVSKYIQEQNEKIYAPQGLLLTDPIE 117
+EKVL K+ Y+ E + K Y + LL+ DP++
Sbjct: 136 FEKVLDKIVHYLVENSSKYYEKEALLM-DPVD 166
>gi|90577167 RUN and TBC1 domain containing 2 isoform 1 [Homo
sapiens]
Length = 1148
Score = 29.6 bits (65), Expect = 0.81
Identities = 13/32 (40%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Query: 86 YEKVLKKVSKYIQEQNEKIYAPQGLLLTDPIE 117
+EKVL K+ Y+ E + K Y + LL+ DP++
Sbjct: 136 FEKVLDKIVHYLVENSSKYYEKEALLM-DPVD 166
>gi|89886470 hypothetical protein LOC84960 [Homo sapiens]
Length = 534
Score = 28.5 bits (62), Expect = 1.8
Identities = 28/107 (26%), Positives = 50/107 (46%), Gaps = 16/107 (14%)
Query: 33 ELENRIDRQQFEE-TVRTLNNLYAEAEKLGGQSYLEGCLACLTAYTIFLCMETHYEKVLK 91
+LEN I++ + T + ++ LY + YL+ LA Y I L +K+
Sbjct: 150 QLENNIEKTMIKIITSQNIHLLYLDL-----LDYLKTVLA---GYPIEL------DKLQN 195
Query: 92 KVSKYIQEQNE-KIYAPQGLLLTDPIERGLRVIEITIYEDRGMSSGR 137
V Y E ++ KI + +++TD ++R +R E + E+R R
Sbjct: 196 LVVNYCSELSDMKIMSQDAMMITDEVKRNMRQREASFIEERRARENR 242
>gi|210032790 hypothetical protein LOC27146 [Homo sapiens]
Length = 1060
Score = 28.1 bits (61), Expect = 2.4
Identities = 24/112 (21%), Positives = 49/112 (43%), Gaps = 8/112 (7%)
Query: 1 MRPQQAPVSGKVFIQRDYSSGTRC-------QFQTKFPAELENRIDRQQFEETVRTLNNL 53
+R + +G + Q+D S C QTK A E +QQ+EE +R + +
Sbjct: 357 LREENDLEAGNLHPQQDQSCLKECPCMKGGTDMQTKKEASAETEYMKQQYEEDLRKIKHQ 416
Query: 54 YAEAEKLGGQSYLEGCLACLTAYTIFL-CMETHYEKVLKKVSKYIQEQNEKI 104
E +K ++ + +T+ + + + E KK+ + ++ Q E++
Sbjct: 417 TEEEKKHLKDQLVKRLEDLVKKHTVEIKSVRSSVEAERKKLQREVEAQLEEV 468
>gi|156151445 acyl-CoA synthetase family member 2 [Homo sapiens]
Length = 615
Score = 27.3 bits (59), Expect = 4.0
Identities = 19/75 (25%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Query: 60 LGGQSYLEGCL-ACLTAYTIFLCMETHYEKVLKKVSKYIQEQNEKIYAPQGLLLTDPIER 118
+GG SY++GC L + T+ C+ET ++V ++ + + ++ ++ Q D
Sbjct: 55 IGGLSYVQGCTKKHLNSKTVGQCLETTAQRVPEREALVVLHEDVRLTFAQLKEEVDKAAS 114
Query: 119 GLRVIEITIYEDRGM 133
GL I + + GM
Sbjct: 115 GLLSIGLCKGDRLGM 129
>gi|17998551 serine (or cysteine) proteinase inhibitor, clade B
(ovalbumin), member 12 [Homo sapiens]
Length = 405
Score = 27.3 bits (59), Expect = 4.0
Identities = 16/70 (22%), Positives = 37/70 (52%)
Query: 33 ELENRIDRQQFEETVRTLNNLYAEAEKLGGQSYLEGCLACLTAYTIFLCMETHYEKVLKK 92
+L +++DR + + T+ N LY E E Q YL+G + + + + EK ++
Sbjct: 98 QLLSKLDRIKTDYTLSIANRLYGEQEFPICQEYLDGVIQFYHTTIESVDFQKNPEKSRQE 157
Query: 93 VSKYIQEQNE 102
++ +++ Q++
Sbjct: 158 INFWVECQSQ 167
>gi|42794625 alpha-methylacyl-CoA racemase isoform 1 [Homo sapiens]
Length = 382
Score = 26.9 bits (58), Expect = 5.3
Identities = 20/83 (24%), Positives = 36/83 (43%), Gaps = 1/83 (1%)
Query: 33 ELENRIDRQQFEETVRTLNNLYAEAEKLGGQSYLEGCLACLTAYTIFLCMETHYEKVLKK 92
EL N++ + E + +++AE K +G AC+T F + H++ ++
Sbjct: 254 ELPNQMSMDDWPEMKKKFADVFAEKTKAEWCQIFDGTDACVTPVLTFEEV-VHHDHNKER 312
Query: 93 VSKYIQEQNEKIYAPQGLLLTDP 115
S E+ + P LLL P
Sbjct: 313 GSFITSEEQDVSPRPAPLLLNTP 335
>gi|90093355 jumonji C domain containing histone demethylase 1
homolog D [Homo sapiens]
Length = 941
Score = 26.9 bits (58), Expect = 5.3
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 85 HYEKVLKKVSKYIQEQNEKIYAPQGLLLTDPIER 118
H K L KV + I+E+N K QG+ + P+ R
Sbjct: 463 HLIKELSKVIRAIEEENGKPVKSQGIPIVCPVSR 496
>gi|148612829 RUN and TBC1 domain containing 1 isoform 2 [Homo
sapiens]
Length = 1006
Score = 26.9 bits (58), Expect = 5.3
Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 87 EKVLKKVSKYIQEQNEKIYAPQGLLLTDPI 116
EKVL KV +Y+ E K Y + LL DP+
Sbjct: 138 EKVLDKVVQYLAENCSKYYEKEA-LLADPV 166
>gi|148612795 RUN and TBC1 domain containing 1 isoform 1 [Homo
sapiens]
Length = 1051
Score = 26.9 bits (58), Expect = 5.3
Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 87 EKVLKKVSKYIQEQNEKIYAPQGLLLTDPI 116
EKVL KV +Y+ E K Y + LL DP+
Sbjct: 138 EKVLDKVVQYLAENCSKYYEKEA-LLADPV 166
>gi|219842319 Bardet-Biedl syndrome 2 protein [Homo sapiens]
Length = 721
Score = 26.9 bits (58), Expect = 5.3
Identities = 21/84 (25%), Positives = 33/84 (39%), Gaps = 1/84 (1%)
Query: 6 APVSGKVFIQRDYSSGTRCQFQTKFPAELENRIDRQQFEETVRTLNNLYAEAEKLGGQSY 65
A +GKVFI ++ F + LE+ + + V L E LG +
Sbjct: 34 ATQTGKVFIHNPHTRNQHVSASRVFQSPLESDVSLLNINQAVSCLTAGVLNPE-LGYDAL 92
Query: 66 LEGCLACLTAYTIFLCMETHYEKV 89
L G L AY ++ + Y +V
Sbjct: 93 LVGTQTNLLAYDVYNNSDLFYREV 116
>gi|119466532 laminin alpha 2 subunit isoform b precursor [Homo
sapiens]
Length = 3118
Score = 26.2 bits (56), Expect = 9.0
Identities = 31/119 (26%), Positives = 46/119 (38%), Gaps = 22/119 (18%)
Query: 27 QTKFPA---ELENRIDRQQFEETVRTLNNLYAEAEKLGGQ-----SYLEGCL-------- 70
QTK P EL ++ID E R L ++AE Q + L+G L
Sbjct: 1860 QTKLPPMSEELNDKIDDLSQEIKDRKLAEKVSQAESHAAQLNDSSAVLDGILDEAKNISF 1919
Query: 71 ---ACLTAYTIFLCMETHYEKVLKKVSKYIQEQNEKIYAPQGLLLTDP---IERGLRVI 123
A AY+ EKV K+ E + P+GLL D +++ R++
Sbjct: 1920 NATAAFKAYSNIKDYIDEAEKVAKEAKDLAHEATKLATGPRGLLKEDAKGCLQKSFRIL 1978
>gi|28559088 laminin alpha 2 subunit isoform a precursor [Homo
sapiens]
Length = 3122
Score = 26.2 bits (56), Expect = 9.0
Identities = 31/119 (26%), Positives = 46/119 (38%), Gaps = 22/119 (18%)
Query: 27 QTKFPA---ELENRIDRQQFEETVRTLNNLYAEAEKLGGQ-----SYLEGCL-------- 70
QTK P EL ++ID E R L ++AE Q + L+G L
Sbjct: 1860 QTKLPPMSEELNDKIDDLSQEIKDRKLAEKVSQAESHAAQLNDSSAVLDGILDEAKNISF 1919
Query: 71 ---ACLTAYTIFLCMETHYEKVLKKVSKYIQEQNEKIYAPQGLLLTDP---IERGLRVI 123
A AY+ EKV K+ E + P+GLL D +++ R++
Sbjct: 1920 NATAAFKAYSNIKDYIDEAEKVAKEAKDLAHEATKLATGPRGLLKEDAKGCLQKSFRIL 1978
>gi|114199473 vacuolar protein sorting 41 isoform 2 [Homo sapiens]
Length = 829
Score = 26.2 bits (56), Expect = 9.0
Identities = 15/56 (26%), Positives = 23/56 (41%)
Query: 34 LENRIDRQQFEETVRTLNNLYAEAEKLGGQSYLEGCLACLTAYTIFLCMETHYEKV 89
LE D + EE+ Y + + +C+T + FL + THY KV
Sbjct: 12 LEESTDESEEEESEEEPKLKYERLSNGVTEILQKDAASCMTVHDKFLALGTHYGKV 67
>gi|114199475 vacuolar protein sorting 41 isoform 1 [Homo sapiens]
Length = 854
Score = 26.2 bits (56), Expect = 9.0
Identities = 15/56 (26%), Positives = 23/56 (41%)
Query: 34 LENRIDRQQFEETVRTLNNLYAEAEKLGGQSYLEGCLACLTAYTIFLCMETHYEKV 89
LE D + EE+ Y + + +C+T + FL + THY KV
Sbjct: 12 LEESTDESEEEESEEEPKLKYERLSNGVTEILQKDAASCMTVHDKFLALGTHYGKV 67
>gi|89903023 hypothetical protein LOC113177 isoform 3 [Homo sapiens]
Length = 232
Score = 26.2 bits (56), Expect = 9.0
Identities = 20/64 (31%), Positives = 27/64 (42%), Gaps = 6/64 (9%)
Query: 69 CLACLTAYTIFLCMETHYEKVLKKVSKYIQEQNEKIY-----APQGLLLTDPIERGLRVI 123
CL CLTA C+ H KK S Y N K + G LLTD + ++ +
Sbjct: 6 CLVCLTAALAHGCLHCH-SNFSKKFSFYRHHVNFKSWWVGDIPVSGALLTDWSDDTMKEL 64
Query: 124 EITI 127
+ I
Sbjct: 65 HLAI 68
>gi|89903025 hypothetical protein LOC113177 isoform 1 [Homo sapiens]
Length = 214
Score = 26.2 bits (56), Expect = 9.0
Identities = 20/64 (31%), Positives = 27/64 (42%), Gaps = 6/64 (9%)
Query: 69 CLACLTAYTIFLCMETHYEKVLKKVSKYIQEQNEKIY-----APQGLLLTDPIERGLRVI 123
CL CLTA C+ H KK S Y N K + G LLTD + ++ +
Sbjct: 6 CLVCLTAALAHGCLHCH-SNFSKKFSFYRHHVNFKSWWVGDIPVSGALLTDWSDDTMKEL 64
Query: 124 EITI 127
+ I
Sbjct: 65 HLAI 68
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.136 0.389
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,994,887
Number of Sequences: 37866
Number of extensions: 191273
Number of successful extensions: 485
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 470
Number of HSP's gapped (non-prelim): 28
length of query: 137
length of database: 18,247,518
effective HSP length: 91
effective length of query: 46
effective length of database: 14,801,712
effective search space: 680878752
effective search space used: 680878752
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.