SGSM1 37193

Name: SGSM1	Sequence: fasta or formatted (1087aa)		NCBI GI: 90577164
Description: RUN and TBC1 domain containing 2 isoform 2		Referenced in: Additional Interaction Domain Families Rab
Other entries for this name: alt prot [1093aa] RUN and TBC1 domain containing 2 isoform 3 alt prot [1032aa] RUN and TBC1 domain containing 2 isoform 4 alt prot [1148aa] RUN and TBC1 domain containing 2 isoform 1
Composition: Amino acid Percentage Count Longest homopolymer A alanine 6.2 67 2 C cysteine 1.7 19 1 D aspartate 6.3 69 3 E glutamate 7.3 79 2 F phenylalanine 3.3 36 2 G glycine 4.8 52 2 H histidine 3.3 36 1 I isoleucine 3.8 41 2 K lysine 4.4 48 2 L leucine 10.7 116 2 M methionine 3.0 33 2 N asparagine 3.6 39 2 P proline 5.4 59 2 Q glutamine 4.8 52 2 R arginine 5.5 60 3 S serine 10.1 110 4 T threonine 4.4 48 2 V valine 6.5 71 2 W tryptophan 1.7 18 1 Y tyrosine 3.1 34 2			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 RUN and TBC1 domain containing 2 isoform 2 SGSM1 0.983 RUN and TBC1 domain containing 2 isoform 1 SGSM1 0.926 RUN and TBC1 domain containing 2 isoform 4 SGSM1 0.908 RUN and TBC1 domain containing 2 isoform 3 SGSM2 0.508 RUN and TBC1 domain containing 1 isoform 1 SGSM2 0.502 RUN and TBC1 domain containing 1 isoform 2 TBC1D15 0.046 TBC1 domain family, member 15 isoform 2 TBC1D15 0.046 TBC1 domain family, member 15 isoform 3 TBC1D15 0.046 TBC1 domain family, member 15 isoform 1 TBC1D16 0.044 TBC1 domain family, member 16 TBC1D17 0.043 TBC1 domain family, member 17 TBC1D25 0.038 TBC1 domain family, member 25 TBCKL 0.017 TBC domain-containing protein kinase-like TBC1D2 0.015 TBC1 domain family, member 2 RUFY2 0.014 RUN and FYVE domain-containing 2 isoform a TBC1D13 0.013 TBC1 domain family, member 13 TBC1D2B 0.013 TBC1 domain family, member 2B isoform a TBC1D2B 0.013 TBC1 domain family, member 2B isoform b TBC1D12 0.013 TBC1 domain family, member 12 RUFY1 0.013 RUN and FYVE domain-containing 1 isoform b RUFY1 0.013 RUN and FYVE domain-containing 1 isoform b RUFY1 0.013 RUN and FYVE domain-containing 1 isoform a TBC1D22A 0.011 TBC1 domain family, member 22A TBC1D14 0.011 TBC1 domain family, member 14 isoform b TBC1D14 0.011 TBC1 domain family, member 14 isoform a TBC1D14 0.011 TBC1 domain family, member 14 isoform a TBC1D4 0.009 TBC1 domain family, member 4 RABGAP1L 0.008 RAB GTPase activating protein 1-like isoform A [Homo... TBC1D5 0.008 TBC1 domain family, member 5 isoform a TBC1D5 0.008 TBC1 domain family, member 5 isoform b Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.