Guide to the Human Genome
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Name: SGSM1 Sequence: fasta or formatted (1032aa) NCBI GI: 148612875
Description:

RUN and TBC1 domain containing 2 isoform 4

Referenced in:

Additional Interaction Domain Families
Rab

Other entries for this name:
alt prot [1093aa] RUN and TBC1 domain containing 2 isoform 3
alt prot [1087aa] RUN and TBC1 domain containing 2 isoform 2
alt prot [1148aa] RUN and TBC1 domain containing 2 isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.0         62           2
 C cysteine            1.8         19           1
 D aspartate           6.5         67           3
 E glutamate           7.5         77           2
 F phenylalanine       3.4         35           2
 G glycine             4.7         48           2
 H histidine           3.5         36           1
 I isoleucine          4.0         41           2
 K lysine              4.6         47           2
 L leucine            10.9        113           2
 M methionine          2.8         29           1
 N asparagine          3.8         39           2
 P proline             4.8         50           2
 Q glutamine           4.8         50           2
 R arginine            5.5         57           3
 S serine             10.0        103           4
 T threonine           4.3         44           2
 V valine              6.4         66           2
 W tryptophan          1.5         15           1
 Y tyrosine            3.3         34           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   RUN and TBC1 domain containing 2 isoform 4 
SGSM1                 0.982   RUN and TBC1 domain containing 2 isoform 3 
SGSM1                 0.977   RUN and TBC1 domain containing 2 isoform 2 
SGSM1                 0.958   RUN and TBC1 domain containing 2 isoform 1 
SGSM2                 0.540   RUN and TBC1 domain containing 1 isoform 2 
SGSM2                 0.533   RUN and TBC1 domain containing 1 isoform 1 
TBC1D15               0.049   TBC1 domain family, member 15 isoform 2 
TBC1D15               0.049   TBC1 domain family, member 15 isoform 3 
TBC1D15               0.049   TBC1 domain family, member 15 isoform 1 
TBC1D16               0.046   TBC1 domain family, member 16 
TBC1D17               0.045   TBC1 domain family, member 17 
TBC1D25               0.040   TBC1 domain family, member 25 
TBCKL                 0.018   TBC domain-containing protein kinase-like 
TBC1D2                0.016   TBC1 domain family, member 2 
RUFY2                 0.015   RUN and FYVE domain-containing 2 isoform a 
TBC1D13               0.014   TBC1 domain family, member 13 
TBC1D2B               0.014   TBC1 domain family, member 2B isoform a 
TBC1D2B               0.014   TBC1 domain family, member 2B isoform b 
TBC1D12               0.014   TBC1 domain family, member 12 
RUFY1                 0.014   RUN and FYVE domain-containing 1 isoform b 
RUFY1                 0.014   RUN and FYVE domain-containing 1 isoform b 
RUFY1                 0.014   RUN and FYVE domain-containing 1 isoform a 
TBC1D22A              0.012   TBC1 domain family, member 22A 
TBC1D14               0.012   TBC1 domain family, member 14 isoform b 
TBC1D14               0.012   TBC1 domain family, member 14 isoform a 
TBC1D14               0.012   TBC1 domain family, member 14 isoform a 
TBC1D4                0.009   TBC1 domain family, member 4 
RABGAP1L              0.009   RAB GTPase activating protein 1-like isoform A [Homo...
TBC1D5                0.008   TBC1 domain family, member 5 isoform a 
TBC1D5                0.008   TBC1 domain family, member 5 isoform b 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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