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Search of human proteins with 50409796
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|50409796 APC11 anaphase promoting complex subunit 11 isoform
2 [Homo sapiens]
(84 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|50409750 APC11 anaphase promoting complex subunit 11 isoform ... 206 2e-54
gi|50409789 APC11 anaphase promoting complex subunit 11 isoform ... 206 2e-54
gi|50409781 APC11 anaphase promoting complex subunit 11 isoform ... 206 2e-54
gi|50409804 APC11 anaphase promoting complex subunit 11 isoform ... 206 2e-54
gi|50409796 APC11 anaphase promoting complex subunit 11 isoform ... 206 2e-54
gi|18777675 APC11 anaphase promoting complex subunit 11 isoform ... 206 2e-54
gi|50409810 APC11 anaphase promoting complex subunit 11 isoform ... 98 2e-21
gi|7657508 ring-box 1 [Homo sapiens] 82 7e-17
gi|7657522 ring finger protein 7 isoform 1 [Homo sapiens] 74 2e-14
gi|21314654 ring finger protein 139 [Homo sapiens] 37 0.003
gi|197245452 ring finger protein 24 isoform 2 [Homo sapiens] 37 0.003
gi|197245450 ring finger protein 24 isoform 1 [Homo sapiens] 37 0.003
gi|6857791 ring finger protein 24 isoform 1 [Homo sapiens] 37 0.003
gi|87241872 ring finger protein 151 [Homo sapiens] 37 0.003
gi|21389515 ring finger protein 145 [Homo sapiens] 37 0.004
gi|38045931 ring finger protein 122 [Homo sapiens] 36 0.007
gi|34452686 ring finger protein, LIM domain interacting [Homo sa... 35 0.013
gi|34452684 ring finger protein, LIM domain interacting [Homo sa... 35 0.013
gi|5174653 ring finger protein 6 [Homo sapiens] 35 0.017
gi|21071001 autocrine motility factor receptor [Homo sapiens] 35 0.017
gi|5032243 makorin ring finger protein 3 [Homo sapiens] 35 0.017
gi|34305295 ring finger protein 6 [Homo sapiens] 35 0.017
gi|34305293 ring finger protein 6 [Homo sapiens] 35 0.017
gi|150170725 zinc and ring finger 4 [Homo sapiens] 35 0.017
gi|5031825 ring finger protein 103 [Homo sapiens] 34 0.022
gi|27436927 synoviolin 1 isoform b [Homo sapiens] 34 0.028
gi|27436925 synoviolin 1 isoform a [Homo sapiens] 34 0.028
gi|7706091 bifunctional apoptosis regulator [Homo sapiens] 34 0.028
gi|7706039 ring finger protein 181 [Homo sapiens] 34 0.028
gi|37577185 ring finger protein 38 isoform 2 [Homo sapiens] 34 0.028
>gi|50409750 APC11 anaphase promoting complex subunit 11 isoform 2
[Homo sapiens]
Length = 84
Score = 206 bits (525), Expect = 2e-54
Identities = 84/84 (100%), Positives = 84/84 (100%)
Query: 1 MKVKIKCWNGVATWLWVANDENCGICRMAFNGCCPDCKVPGDDCPLVWGQCSHCFHMHCI 60
MKVKIKCWNGVATWLWVANDENCGICRMAFNGCCPDCKVPGDDCPLVWGQCSHCFHMHCI
Sbjct: 1 MKVKIKCWNGVATWLWVANDENCGICRMAFNGCCPDCKVPGDDCPLVWGQCSHCFHMHCI 60
Query: 61 LKWLHAQQVQQHCPMCRQEWKFKE 84
LKWLHAQQVQQHCPMCRQEWKFKE
Sbjct: 61 LKWLHAQQVQQHCPMCRQEWKFKE 84
>gi|50409789 APC11 anaphase promoting complex subunit 11 isoform 2
[Homo sapiens]
Length = 84
Score = 206 bits (525), Expect = 2e-54
Identities = 84/84 (100%), Positives = 84/84 (100%)
Query: 1 MKVKIKCWNGVATWLWVANDENCGICRMAFNGCCPDCKVPGDDCPLVWGQCSHCFHMHCI 60
MKVKIKCWNGVATWLWVANDENCGICRMAFNGCCPDCKVPGDDCPLVWGQCSHCFHMHCI
Sbjct: 1 MKVKIKCWNGVATWLWVANDENCGICRMAFNGCCPDCKVPGDDCPLVWGQCSHCFHMHCI 60
Query: 61 LKWLHAQQVQQHCPMCRQEWKFKE 84
LKWLHAQQVQQHCPMCRQEWKFKE
Sbjct: 61 LKWLHAQQVQQHCPMCRQEWKFKE 84
>gi|50409781 APC11 anaphase promoting complex subunit 11 isoform 2
[Homo sapiens]
Length = 84
Score = 206 bits (525), Expect = 2e-54
Identities = 84/84 (100%), Positives = 84/84 (100%)
Query: 1 MKVKIKCWNGVATWLWVANDENCGICRMAFNGCCPDCKVPGDDCPLVWGQCSHCFHMHCI 60
MKVKIKCWNGVATWLWVANDENCGICRMAFNGCCPDCKVPGDDCPLVWGQCSHCFHMHCI
Sbjct: 1 MKVKIKCWNGVATWLWVANDENCGICRMAFNGCCPDCKVPGDDCPLVWGQCSHCFHMHCI 60
Query: 61 LKWLHAQQVQQHCPMCRQEWKFKE 84
LKWLHAQQVQQHCPMCRQEWKFKE
Sbjct: 61 LKWLHAQQVQQHCPMCRQEWKFKE 84
>gi|50409804 APC11 anaphase promoting complex subunit 11 isoform 2
[Homo sapiens]
Length = 84
Score = 206 bits (525), Expect = 2e-54
Identities = 84/84 (100%), Positives = 84/84 (100%)
Query: 1 MKVKIKCWNGVATWLWVANDENCGICRMAFNGCCPDCKVPGDDCPLVWGQCSHCFHMHCI 60
MKVKIKCWNGVATWLWVANDENCGICRMAFNGCCPDCKVPGDDCPLVWGQCSHCFHMHCI
Sbjct: 1 MKVKIKCWNGVATWLWVANDENCGICRMAFNGCCPDCKVPGDDCPLVWGQCSHCFHMHCI 60
Query: 61 LKWLHAQQVQQHCPMCRQEWKFKE 84
LKWLHAQQVQQHCPMCRQEWKFKE
Sbjct: 61 LKWLHAQQVQQHCPMCRQEWKFKE 84
>gi|50409796 APC11 anaphase promoting complex subunit 11 isoform 2
[Homo sapiens]
Length = 84
Score = 206 bits (525), Expect = 2e-54
Identities = 84/84 (100%), Positives = 84/84 (100%)
Query: 1 MKVKIKCWNGVATWLWVANDENCGICRMAFNGCCPDCKVPGDDCPLVWGQCSHCFHMHCI 60
MKVKIKCWNGVATWLWVANDENCGICRMAFNGCCPDCKVPGDDCPLVWGQCSHCFHMHCI
Sbjct: 1 MKVKIKCWNGVATWLWVANDENCGICRMAFNGCCPDCKVPGDDCPLVWGQCSHCFHMHCI 60
Query: 61 LKWLHAQQVQQHCPMCRQEWKFKE 84
LKWLHAQQVQQHCPMCRQEWKFKE
Sbjct: 61 LKWLHAQQVQQHCPMCRQEWKFKE 84
>gi|18777675 APC11 anaphase promoting complex subunit 11 isoform 2
[Homo sapiens]
Length = 84
Score = 206 bits (525), Expect = 2e-54
Identities = 84/84 (100%), Positives = 84/84 (100%)
Query: 1 MKVKIKCWNGVATWLWVANDENCGICRMAFNGCCPDCKVPGDDCPLVWGQCSHCFHMHCI 60
MKVKIKCWNGVATWLWVANDENCGICRMAFNGCCPDCKVPGDDCPLVWGQCSHCFHMHCI
Sbjct: 1 MKVKIKCWNGVATWLWVANDENCGICRMAFNGCCPDCKVPGDDCPLVWGQCSHCFHMHCI 60
Query: 61 LKWLHAQQVQQHCPMCRQEWKFKE 84
LKWLHAQQVQQHCPMCRQEWKFKE
Sbjct: 61 LKWLHAQQVQQHCPMCRQEWKFKE 84
>gi|50409810 APC11 anaphase promoting complex subunit 11 isoform 1
[Homo sapiens]
Length = 196
Score = 97.8 bits (242), Expect = 2e-21
Identities = 40/51 (78%), Positives = 42/51 (82%)
Query: 1 MKVKIKCWNGVATWLWVANDENCGICRMAFNGCCPDCKVPGDDCPLVWGQC 51
MKVKIKCWNGVATWLWVANDENCGICRMAFNGCCPDC + G+ G C
Sbjct: 1 MKVKIKCWNGVATWLWVANDENCGICRMAFNGCCPDCPLHGESISRCLGWC 51
>gi|7657508 ring-box 1 [Homo sapiens]
Length = 108
Score = 82.4 bits (202), Expect = 7e-17
Identities = 33/88 (37%), Positives = 50/88 (56%), Gaps = 8/88 (9%)
Query: 2 KVKIKCWNGVATWLWVANDENCGICRMAFNGCCPDCKV-----PGDDCPLVWGQCSHCFH 56
+ ++K WN VA W W +NC ICR C +C+ ++C + WG C+H FH
Sbjct: 21 RFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFH 80
Query: 57 MHCILKWLHAQQVQQHCPMCRQEWKFKE 84
HCI +WL +QV CP+ +EW+F++
Sbjct: 81 FHCISRWLKTRQV---CPLDNREWEFQK 105
>gi|7657522 ring finger protein 7 isoform 1 [Homo sapiens]
Length = 113
Score = 74.3 bits (181), Expect = 2e-14
Identities = 29/78 (37%), Positives = 43/78 (55%), Gaps = 5/78 (6%)
Query: 5 IKCWNGVATWLWVANDENCGICRMAFNGCCPDCKVPG--DDCPLVWGQCSHCFHMHCILK 62
+K WN VA W W + C ICR+ C C+ +DC +VWG+C+H FH C+
Sbjct: 32 LKKWNAVAMWSWDVECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSL 91
Query: 63 WLHAQQVQQHCPMCRQEW 80
W+ + CP+C+Q+W
Sbjct: 92 WV---KQNNRCPLCQQDW 106
>gi|21314654 ring finger protein 139 [Homo sapiens]
Length = 664
Score = 37.4 bits (85), Expect = 0.003
Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 3/29 (10%)
Query: 51 CSHCFHMHCILKWLHAQQVQQHCPMCRQE 79
C+H FH C+ KWL+ +Q CPMC Q+
Sbjct: 563 CNHYFHALCLRKWLY---IQDTCPMCHQK 588
>gi|197245452 ring finger protein 24 isoform 2 [Homo sapiens]
Length = 169
Score = 37.0 bits (84), Expect = 0.003
Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 12/47 (25%)
Query: 33 CCPDCKVPGDD---CPLVWGQCSHCFHMHCILKWLHAQQVQQHCPMC 76
C D K P D+ CP C H FH C++KWL ++V CP+C
Sbjct: 102 CLEDFK-PRDELGICP-----CKHAFHRKCLIKWLEVRKV---CPLC 139
>gi|197245450 ring finger protein 24 isoform 1 [Homo sapiens]
Length = 148
Score = 37.0 bits (84), Expect = 0.003
Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 12/47 (25%)
Query: 33 CCPDCKVPGDD---CPLVWGQCSHCFHMHCILKWLHAQQVQQHCPMC 76
C D K P D+ CP C H FH C++KWL ++V CP+C
Sbjct: 81 CLEDFK-PRDELGICP-----CKHAFHRKCLIKWLEVRKV---CPLC 118
>gi|6857791 ring finger protein 24 isoform 1 [Homo sapiens]
Length = 148
Score = 37.0 bits (84), Expect = 0.003
Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 12/47 (25%)
Query: 33 CCPDCKVPGDD---CPLVWGQCSHCFHMHCILKWLHAQQVQQHCPMC 76
C D K P D+ CP C H FH C++KWL ++V CP+C
Sbjct: 81 CLEDFK-PRDELGICP-----CKHAFHRKCLIKWLEVRKV---CPLC 118
>gi|87241872 ring finger protein 151 [Homo sapiens]
Length = 245
Score = 37.0 bits (84), Expect = 0.003
Identities = 17/34 (50%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
Query: 51 CSHCFHMHCILKWLHAQQVQQHCPMCRQEWKFKE 84
CSH F CIL+WL Q+ CP CR+E K K+
Sbjct: 35 CSHIFCKKCILRWLARQKT---CPCCRKEVKRKK 65
>gi|21389515 ring finger protein 145 [Homo sapiens]
Length = 691
Score = 36.6 bits (83), Expect = 0.004
Identities = 14/26 (53%), Positives = 18/26 (69%), Gaps = 3/26 (11%)
Query: 51 CSHCFHMHCILKWLHAQQVQQHCPMC 76
CSH FH C+ KWL+ VQ+ CP+C
Sbjct: 580 CSHFFHAGCLKKWLY---VQETCPLC 602
>gi|38045931 ring finger protein 122 [Homo sapiens]
Length = 155
Score = 35.8 bits (81), Expect = 0.007
Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 13/58 (22%)
Query: 21 ENCGICRMAFNGCCPDCKVPGDDCPLVWGQCSHCFHMHCILKWLHAQQVQQHCPMCRQ 78
+ C +C F G D+ ++ C H FH C++KWL + V CPMC +
Sbjct: 91 QTCAVCLEDFKG--------KDELGVL--PCQHAFHRKCLVKWLEVRCV---CPMCNK 135
>gi|34452686 ring finger protein, LIM domain interacting [Homo
sapiens]
Length = 624
Score = 35.0 bits (79), Expect = 0.013
Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 3/28 (10%)
Query: 51 CSHCFHMHCILKWLHAQQVQQHCPMCRQ 78
CSH +H+HCI +WL CP+CR+
Sbjct: 588 CSHEYHVHCIDRWLSENST---CPICRR 612
>gi|34452684 ring finger protein, LIM domain interacting [Homo
sapiens]
Length = 624
Score = 35.0 bits (79), Expect = 0.013
Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 3/28 (10%)
Query: 51 CSHCFHMHCILKWLHAQQVQQHCPMCRQ 78
CSH +H+HCI +WL CP+CR+
Sbjct: 588 CSHEYHVHCIDRWLSENST---CPICRR 612
>gi|5174653 ring finger protein 6 [Homo sapiens]
Length = 685
Score = 34.7 bits (78), Expect = 0.017
Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 3/28 (10%)
Query: 51 CSHCFHMHCILKWLHAQQVQQHCPMCRQ 78
C H FH+HCI +WL CP+CRQ
Sbjct: 650 CMHEFHIHCIDRWLSENCT---CPICRQ 674
>gi|21071001 autocrine motility factor receptor [Homo sapiens]
Length = 643
Score = 34.7 bits (78), Expect = 0.017
Identities = 16/47 (34%), Positives = 19/47 (40%), Gaps = 11/47 (23%)
Query: 39 VPGDDCPLVWGQ--------CSHCFHMHCILKWLHAQQVQQHCPMCR 77
V DDC + W C H FH C+ WL + CP CR
Sbjct: 336 VNNDDCAICWDSMQAARKLPCGHLFHNSCLRSWL---EQDTSCPTCR 379
>gi|5032243 makorin ring finger protein 3 [Homo sapiens]
Length = 507
Score = 34.7 bits (78), Expect = 0.017
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 10/63 (15%)
Query: 20 DENCGIC-RMAFNGCCPDCKVPGDDCPLVWGQCSHCFHMHCILKWLHAQQ----VQQHCP 74
D+ CGIC + + P+ + G + C+H F + CI +W A+Q + + CP
Sbjct: 308 DKVCGICMEVVYEKANPNDRRFG-----ILSNCNHSFCIRCIRRWRSARQFENRIVKSCP 362
Query: 75 MCR 77
CR
Sbjct: 363 QCR 365
>gi|34305295 ring finger protein 6 [Homo sapiens]
Length = 685
Score = 34.7 bits (78), Expect = 0.017
Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 3/28 (10%)
Query: 51 CSHCFHMHCILKWLHAQQVQQHCPMCRQ 78
C H FH+HCI +WL CP+CRQ
Sbjct: 650 CMHEFHIHCIDRWLSENCT---CPICRQ 674
>gi|34305293 ring finger protein 6 [Homo sapiens]
Length = 685
Score = 34.7 bits (78), Expect = 0.017
Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 3/28 (10%)
Query: 51 CSHCFHMHCILKWLHAQQVQQHCPMCRQ 78
C H FH+HCI +WL CP+CRQ
Sbjct: 650 CMHEFHIHCIDRWLSENCT---CPICRQ 674
>gi|150170725 zinc and ring finger 4 [Homo sapiens]
Length = 429
Score = 34.7 bits (78), Expect = 0.017
Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 13/68 (19%)
Query: 11 VATWLWVANDENCGICRMAFNGCCPDCKVPGDDCPLVWGQCSHCFHMHCILKWLHAQQVQ 70
V T+ W +++ C IC + GD ++ CSH +H CI W +Q +
Sbjct: 299 VRTFTW--HNDLCAICLDEYE--------EGDQLKIL--PCSHTYHCKCIDPWF-SQAPR 345
Query: 71 QHCPMCRQ 78
+ CP+C+Q
Sbjct: 346 RSCPVCKQ 353
>gi|5031825 ring finger protein 103 [Homo sapiens]
Length = 685
Score = 34.3 bits (77), Expect = 0.022
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 6/48 (12%)
Query: 34 CPDCKVPGDD----CPLVWGQCSHCFHMHCILKWLHAQQVQQHCPMCR 77
C +C V ++ C L+ C H FH +CI+ WL + CP+CR
Sbjct: 618 CTECVVCLENFENGCLLMGLPCGHVFHQNCIVMWLAGG--RHCCPVCR 663
>gi|27436927 synoviolin 1 isoform b [Homo sapiens]
Length = 617
Score = 33.9 bits (76), Expect = 0.028
Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 3/29 (10%)
Query: 51 CSHCFHMHCILKWLHAQQVQQHCPMCRQE 79
C+H FH C+ W Q QQ CP CR +
Sbjct: 307 CNHIFHTSCLRSWF---QRQQTCPTCRMD 332
>gi|27436925 synoviolin 1 isoform a [Homo sapiens]
Length = 616
Score = 33.9 bits (76), Expect = 0.028
Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 3/29 (10%)
Query: 51 CSHCFHMHCILKWLHAQQVQQHCPMCRQE 79
C+H FH C+ W Q QQ CP CR +
Sbjct: 307 CNHIFHTSCLRSWF---QRQQTCPTCRMD 332
>gi|7706091 bifunctional apoptosis regulator [Homo sapiens]
Length = 450
Score = 33.9 bits (76), Expect = 0.028
Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 51 CSHCFHMHCILKWLHAQQVQQHCPMCRQEWK 81
C H F HC+ W A + CP CR++W+
Sbjct: 49 CGHSFCRHCLALW-WASSKKTECPECREKWE 78
>gi|7706039 ring finger protein 181 [Homo sapiens]
Length = 153
Score = 33.9 bits (76), Expect = 0.028
Identities = 14/29 (48%), Positives = 15/29 (51%), Gaps = 3/29 (10%)
Query: 51 CSHCFHMHCILKWLHAQQVQQHCPMCRQE 79
C H FH CIL WL CP+CR E
Sbjct: 94 CHHLFHSSCILPWL---SKTNSCPLCRYE 119
>gi|37577185 ring finger protein 38 isoform 2 [Homo sapiens]
Length = 432
Score = 33.9 bits (76), Expect = 0.028
Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 3/29 (10%)
Query: 51 CSHCFHMHCILKWLHAQQVQQHCPMCRQE 79
C+H FH C+ KWL A + CP+CR +
Sbjct: 398 CNHEFHAKCVDKWLKANRT---CPICRAD 423
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.330 0.141 0.590
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,155,545
Number of Sequences: 37866
Number of extensions: 186231
Number of successful extensions: 780
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 92
Number of HSP's that attempted gapping in prelim test: 682
Number of HSP's gapped (non-prelim): 177
length of query: 84
length of database: 18,247,518
effective HSP length: 56
effective length of query: 28
effective length of database: 16,127,022
effective search space: 451556616
effective search space used: 451556616
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.