Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 50355978
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|50355978 T-cell leukemia homeobox 3 [Homo sapiens]
(291 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|50355978 T-cell leukemia homeobox 3 [Homo sapiens] 593 e-170
gi|5031757 T-cell leukemia homeobox 1 [Homo sapiens] 336 2e-92
gi|7706621 T-cell leukemia homeobox 2 [Homo sapiens] 317 1e-86
gi|111120318 NK6 transcription factor related, locus 1 [Homo sap... 100 2e-21
gi|70608170 H6 family homeobox 2 [Homo sapiens] 91 9e-19
gi|4506049 hematopoietically expressed homeobox [Homo sapiens] 86 3e-17
gi|157743259 H6 family homeobox 3 [Homo sapiens] 86 3e-17
gi|116805350 homeo box (H6 family) 1 [Homo sapiens] 85 9e-17
gi|19923391 homeobox D3 [Homo sapiens] 84 1e-16
gi|14149611 empty spiracles homeobox 2 [Homo sapiens] 83 2e-16
gi|4504465 homeobox B2 [Homo sapiens] 83 2e-16
gi|14149728 BarH-like homeobox 1 [Homo sapiens] 82 6e-16
gi|63054872 ladybird homeobox 1 [Homo sapiens] 82 6e-16
gi|4557673 pancreatic and duodenal homeobox 1 [Homo sapiens] 82 7e-16
gi|118582284 msh homeobox 1 [Homo sapiens] 81 9e-16
gi|39930383 BarH-like homeobox 2 [Homo sapiens] 81 1e-15
gi|28912912 NK6 transcription factor related, locus 2 [Homo sapi... 80 3e-15
gi|94536800 empty spiracles homolog 1 [Homo sapiens] 79 4e-15
gi|24497513 homeobox A3 isoform a [Homo sapiens] 79 6e-15
gi|13562112 homeobox A3 isoform a [Homo sapiens] 79 6e-15
gi|148746211 NK2 transcription factor related, locus 3 [Homo sap... 78 1e-14
gi|89257348 homeo box HB9 [Homo sapiens] 78 1e-14
gi|4502365 NK3 homeobox 2 [Homo sapiens] 78 1e-14
gi|19923352 NK3 homeobox 1 [Homo sapiens] 77 1e-14
gi|23397672 homeobox D4 [Homo sapiens] 77 2e-14
gi|27886557 msh homeobox 2 [Homo sapiens] 76 4e-14
gi|121114296 caudal type homeobox 1 [Homo sapiens] 76 4e-14
gi|45593144 gastrulation brain homeo box 2 [Homo sapiens] 76 4e-14
gi|10140847 homeobox A2 [Homo sapiens] 75 5e-14
gi|4758090 NK2 transcription factor related, locus 5 [Homo sapiens] 75 9e-14
>gi|50355978 T-cell leukemia homeobox 3 [Homo sapiens]
Length = 291
Score = 593 bits (1528), Expect = e-170
Identities = 291/291 (100%), Positives = 291/291 (100%)
Query: 1 MEAPASAQTPHPHEPISFGIDQILNSPDQDSAPAPRGPDGASYLGGPPGGRPGATYPSLP 60
MEAPASAQTPHPHEPISFGIDQILNSPDQDSAPAPRGPDGASYLGGPPGGRPGATYPSLP
Sbjct: 1 MEAPASAQTPHPHEPISFGIDQILNSPDQDSAPAPRGPDGASYLGGPPGGRPGATYPSLP 60
Query: 61 ASFAGLGAPFEDAGSYSVNLSLAPAGVIRVPAHRPLPGAVPPPLPSALPAMPSVPTVSSL 120
ASFAGLGAPFEDAGSYSVNLSLAPAGVIRVPAHRPLPGAVPPPLPSALPAMPSVPTVSSL
Sbjct: 61 ASFAGLGAPFEDAGSYSVNLSLAPAGVIRVPAHRPLPGAVPPPLPSALPAMPSVPTVSSL 120
Query: 121 GGLNFPWMESSRRFVKDRFTAAAALTPFTVTRRIGHPYQNRTPPKRKKPRTSFSRVQICE 180
GGLNFPWMESSRRFVKDRFTAAAALTPFTVTRRIGHPYQNRTPPKRKKPRTSFSRVQICE
Sbjct: 121 GGLNFPWMESSRRFVKDRFTAAAALTPFTVTRRIGHPYQNRTPPKRKKPRTSFSRVQICE 180
Query: 181 LEKRFHRQKYLASAERAALAKSLKMTDAQVKTWFQNRRTKWRRQTAEEREAERQQASRLM 240
LEKRFHRQKYLASAERAALAKSLKMTDAQVKTWFQNRRTKWRRQTAEEREAERQQASRLM
Sbjct: 181 LEKRFHRQKYLASAERAALAKSLKMTDAQVKTWFQNRRTKWRRQTAEEREAERQQASRLM 240
Query: 241 LQLQHDAFQKSLNDSIQPDPLCLHNSSLFALQNLQPWEEDSSKVPAVTSLV 291
LQLQHDAFQKSLNDSIQPDPLCLHNSSLFALQNLQPWEEDSSKVPAVTSLV
Sbjct: 241 LQLQHDAFQKSLNDSIQPDPLCLHNSSLFALQNLQPWEEDSSKVPAVTSLV 291
>gi|5031757 T-cell leukemia homeobox 1 [Homo sapiens]
Length = 330
Score = 336 bits (861), Expect = 2e-92
Identities = 193/331 (58%), Positives = 218/331 (65%), Gaps = 66/331 (19%)
Query: 10 PHPHEPISFGIDQILNSPDQDSA--PAPRGPDGASYLGGPPGGR---------------- 51
P EPISFGIDQILNSPDQ PA R DG LG GG
Sbjct: 11 PGHAEPISFGIDQILNSPDQGGCMGPASRLQDGEYGLGCLVGGAYTYGGGGSAAATGAGG 70
Query: 52 --------PGATYPSLPASFAGLGAPFEDAGSYSVNLSLA-------------------P 84
PG P PA G + GSY+VN++LA
Sbjct: 71 AGAYGTGGPGG--PGGPAGGGGACSMGPLTGSYNVNMALAGGPGPGGGGGSSGGAGALSA 128
Query: 85 AGVIRVPAHRPLPGAV--PPPLPSALPAMPSVPT---VSSLGGLNFPWMESSRRFVKDRF 139
AGVIRVPAHRPL GAV P PL + LP +PSVP V++L GL FPWMES+RR+ KDRF
Sbjct: 129 AGVIRVPAHRPLAGAVAHPQPLATGLPTVPSVPAMPGVNNLTGLTFPWMESNRRYTKDRF 188
Query: 140 TAAAALTPFTVTRRIGHPYQNRTPPKRKKPRTSFSRVQICELEKRFHRQKYLASAERAAL 199
T GHPYQNRTPPK+KKPRTSF+R+QICELEKRFHRQKYLASAERAAL
Sbjct: 189 T--------------GHPYQNRTPPKKKKPRTSFTRLQICELEKRFHRQKYLASAERAAL 234
Query: 200 AKSLKMTDAQVKTWFQNRRTKWRRQTAEEREAERQQASRLMLQLQHDAFQKSLNDSIQPD 259
AK+LKMTDAQVKTWFQNRRTKWRRQTAEEREAERQQA+R++LQLQ +AFQKSL + D
Sbjct: 235 AKALKMTDAQVKTWFQNRRTKWRRQTAEEREAERQQANRILLQLQQEAFQKSLAQPLPAD 294
Query: 260 PLCLHNSSLFALQNLQPWEEDSSKVPAVTSL 290
PLC+HNSSLFALQNLQPW +DS+K+ +VTS+
Sbjct: 295 PLCVHNSSLFALQNLQPWSDDSTKITSVTSV 325
>gi|7706621 T-cell leukemia homeobox 2 [Homo sapiens]
Length = 284
Score = 317 bits (811), Expect = 1e-86
Identities = 183/289 (63%), Positives = 201/289 (69%), Gaps = 28/289 (9%)
Query: 10 PHPHEPISFGIDQILNSPDQDSAPAP--RGPDGASYLGGPPGGRPGATYPSLPASFAGLG 67
PH HEPISFGIDQIL+ P+ RG G G GG GA+ S A L
Sbjct: 12 PH-HEPISFGIDQILSGPETPGGGLGLGRGGQGHGENGAFSGGYHGASGYGPAGSLAPL- 69
Query: 68 APFEDAGSYSVNLSLAPAGVIRVPAHRPLPGAVPPPLPSALPAMPSVPTVSSLGG----- 122
GS V P GVIRVPAHRPLP VPPP A P+VP S LGG
Sbjct: 70 -----PGSSGVG----PGGVIRVPAHRPLP--VPPPAGGA----PAVPGPSGLGGAGGLA 114
Query: 123 -LNFPWMESSRRFVKDRFTAAAALTPFTVTRRIGHPYQNRTPPKRKKPRTSFSRVQICEL 181
L FPWM+S RRF KDR TAA L+PF+ TRRIGHPYQNRTPPKRKKPRTSFSR Q+ EL
Sbjct: 115 GLTFPWMDSGRRFAKDRLTAA--LSPFSGTRRIGHPYQNRTPPKRKKPRTSFSRSQVLEL 172
Query: 182 EKRFHRQKYLASAERAALAKSLKMTDAQVKTWFQNRRTKWRRQTAEEREAERQQASRLML 241
E+RF RQKYLASAERAALAK+L+MTDAQVKTWFQNRRTKWRRQTAEEREAER +A RL+L
Sbjct: 173 ERRFLRQKYLASAERAALAKALRMTDAQVKTWFQNRRTKWRRQTAEEREAERHRAGRLLL 232
Query: 242 QLQHDAFQKSLNDSIQPDPLCLHNSSLFALQNLQPWEEDSSKVPAVTSL 290
LQ DA + L + PDPLCLHNSSLFALQNLQPW ED +KV +V+ L
Sbjct: 233 HLQQDALPRPLRPPLPPDPLCLHNSSLFALQNLQPWAED-NKVASVSGL 280
>gi|111120318 NK6 transcription factor related, locus 1 [Homo
sapiens]
Length = 367
Score = 100 bits (249), Expect = 2e-21
Identities = 86/263 (32%), Positives = 119/263 (45%), Gaps = 29/263 (11%)
Query: 6 SAQTPHPHEPISFGIDQILNSPDQDSAPAPRGPDGASYLGGPPGGRPGATYPSLPASFAG 65
SA TPH GI+ IL+ P A GA+ P G ++ S AS A
Sbjct: 91 SAATPH-------GINDILSRPSMPVA------SGAALPSASPSGSSSSSSSSASASSAS 137
Query: 66 LGAPFEDAGSYSVNLSLAPAGVIR-VPAHRPLPGAVPPPLPSALPAMPSVPTVSSLGGLN 124
A A + + + +PAG++ +P L PPP P L PS V+++G
Sbjct: 138 AAAAAAAAAAAAAS---SPAGLLAGLPRFSSLS---PPPPPPGLYFSPSAAAVAAVGRYP 191
Query: 125 FPWMESSRRFVKDRFTAAAALTPFTVTRRIGHPYQNRT----PPKRKKPRTSFSRVQICE 180
P E R + P+ R P+Q KRK R +FS QI
Sbjct: 192 KPLAELPGR-TPIFWPGVMQSPPWRDARLACTPHQGSILLDKDGKRKHTRPTFSGQQIFA 250
Query: 181 LEKRFHRQKYLASAERAALAKSLKMTDAQVKTWFQNRRTKWRRQTAEE----REAERQQA 236
LEK F + KYLA ERA LA SL MT++QVK WFQNRRTKWR++ A E ++ + +
Sbjct: 251 LEKTFEQTKYLAGPERARLAYSLGMTESQVKVWFQNRRTKWRKKHAAEMATAKKKQDSET 310
Query: 237 SRLMLQLQHDAFQKSLNDSIQPD 259
RL +++ N + P+
Sbjct: 311 ERLKGASENEEEDDDYNKPLDPN 333
>gi|70608170 H6 family homeobox 2 [Homo sapiens]
Length = 273
Score = 91.3 bits (225), Expect = 9e-19
Identities = 55/134 (41%), Positives = 77/134 (57%), Gaps = 5/134 (3%)
Query: 102 PPLPSALPAMPSVPTVSSLGGLN-FPWMESSR---RFVKDRFTAAAALTPFTVTRRIGHP 157
PP+P P S GGL P++ S + K+R A + +P + R G
Sbjct: 82 PPIPFPCLGTPKGSGGSGPGGLERTPFLSPSHSDFKEEKERLLPAGSPSPGSERPRDGGA 141
Query: 158 YQNRTPPKRKKPRTSFSRVQICELEKRFHRQKYLASAERAALAKSLKMTDAQVKTWFQNR 217
+ + +KK RT FSR Q+ +LE F ++YL+S+ERA LA SL++T+ QVKTWFQNR
Sbjct: 142 -ERQAGAAKKKTRTVFSRSQVYQLESTFDMKRYLSSSERACLASSLQLTETQVKTWFQNR 200
Query: 218 RTKWRRQTAEEREA 231
R KW+RQ + E EA
Sbjct: 201 RNKWKRQLSAELEA 214
>gi|4506049 hematopoietically expressed homeobox [Homo sapiens]
Length = 270
Score = 86.3 bits (212), Expect = 3e-17
Identities = 74/230 (32%), Positives = 100/230 (43%), Gaps = 27/230 (11%)
Query: 8 QTPHPHEPISFGIDQILNSPDQDSAPAPRGPDGAS-YLG-GPPGGRPGATYPSLPASFAG 65
Q PHP P + + L +P PA P LG GP P T PS +SF
Sbjct: 2 QYPHPG-PAAGAVGVPLYAPTPLLQPAHPTPFYIEDILGRGPAAPTPAPTLPSPNSSFTS 60
Query: 66 LGAPFEDAGSYSVNLSLAPAGVIRVPAHRPLPGAVPPPLPSALPAMPSVPTVSSLGGLNF 125
L +P+ R P + P P P + A+ + GG +
Sbjct: 61 LVSPY------------------RTPVYEPTP-IHPAFSHHSAAALAAAYGPGGFGGPLY 101
Query: 126 PWMESSRRFVKDRFTAAAALTPFTVTRRIGHPYQNRTPPKRKKPRTSFSRVQICELEKRF 185
P+ R V D A P + P+ R KRK + FS Q ELEK+F
Sbjct: 102 PFP----RTVNDYTHALLRHDPLGKPL-LWSPFLQRPLHKRKGGQVRFSNDQTIELEKKF 156
Query: 186 HRQKYLASAERAALAKSLKMTDAQVKTWFQNRRTKWRRQTAEEREAERQQ 235
QKYL+ ER LAK L++++ QVKTWFQNRR KWRR E ++ +++
Sbjct: 157 ETQKYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWRRLKQENPQSNKKE 206
>gi|157743259 H6 family homeobox 3 [Homo sapiens]
Length = 357
Score = 86.3 bits (212), Expect = 3e-17
Identities = 46/91 (50%), Positives = 59/91 (64%), Gaps = 1/91 (1%)
Query: 142 AAALTPFTVTRRIGHPYQNRTPP-KRKKPRTSFSRVQICELEKRFHRQKYLASAERAALA 200
AAA TP + G + P ++KK RT FSR Q+ +LE F ++YL+S+ERA LA
Sbjct: 202 AAAATPGAEDWKKGAESPEKKPACRKKKTRTVFSRSQVFQLESTFDMKRYLSSSERAGLA 261
Query: 201 KSLKMTDAQVKTWFQNRRTKWRRQTAEEREA 231
SL +T+ QVK WFQNRR KW+RQ A E EA
Sbjct: 262 ASLHLTETQVKIWFQNRRNKWKRQLAAELEA 292
>gi|116805350 homeo box (H6 family) 1 [Homo sapiens]
Length = 348
Score = 84.7 bits (208), Expect = 9e-17
Identities = 40/67 (59%), Positives = 51/67 (76%)
Query: 165 KRKKPRTSFSRVQICELEKRFHRQKYLASAERAALAKSLKMTDAQVKTWFQNRRTKWRRQ 224
++KK RT FSR Q+ +LE F ++YL+SAERA LA SL++T+ QVK WFQNRR KW+RQ
Sbjct: 202 RKKKTRTVFSRSQVFQLESTFDLKRYLSSAERAGLAASLQLTETQVKIWFQNRRNKWKRQ 261
Query: 225 TAEEREA 231
A E EA
Sbjct: 262 LAAELEA 268
>gi|19923391 homeobox D3 [Homo sapiens]
Length = 432
Score = 84.3 bits (207), Expect = 1e-16
Identities = 50/145 (34%), Positives = 72/145 (49%), Gaps = 26/145 (17%)
Query: 95 PLPGAVPPPLPSALPAMPS--VPTVSSLGGLN------------FPWMESSRRFVKDRFT 140
P P PP LP + P P VP GG N FPWM+ SR+ K + +
Sbjct: 117 PQPPPPPPTLPPSSPTNPGGGVPAKKPKGGPNASSSSATISKQIFPWMKESRQNSKQKNS 176
Query: 141 AAAALTPFTVTRRIGHPYQNRTPP--KRKKPRTSFSRVQICELEKRFHRQKYLASAERAA 198
A A G ++++PP K+ RT+++ Q+ ELEK FH +YL R
Sbjct: 177 CATA----------GESCEDKSPPGPASKRVRTAYTSAQLVELEKEFHFNRYLCRPRRVE 226
Query: 199 LAKSLKMTDAQVKTWFQNRRTKWRR 223
+A L +T+ Q+K WFQNRR K+++
Sbjct: 227 MANLLNLTERQIKIWFQNRRMKYKK 251
>gi|14149611 empty spiracles homeobox 2 [Homo sapiens]
Length = 252
Score = 83.2 bits (204), Expect = 2e-16
Identities = 62/204 (30%), Positives = 86/204 (42%), Gaps = 7/204 (3%)
Query: 35 PRGPDGASYLGGPPGGRPGATYPSLPASFAGLGAPFEDAGSYSVNLSLAPAGVIRVPAHR 94
P P SY P + S A+ AG G ++ +S P + V
Sbjct: 30 PIRPAALSYANSSPINPFLNGFHSAAAAAAGRGVYSNPDLVFAEAVSHPPNPAVPVHPVP 89
Query: 95 PLPGAVPPPLPSALPAMPSVPTVSSLGGLNFPWMESSRRFVKDRFTAAAALTPFTVTRRI 154
P PLPS+ P + +PW+ R++ RF T
Sbjct: 90 PPHALAAHPLPSSHSPHPLFASQQRDPSTFYPWLIHRYRYLGHRFQG-------NDTSPE 142
Query: 155 GHPYQNRTPPKRKKPRTSFSRVQICELEKRFHRQKYLASAERAALAKSLKMTDAQVKTWF 214
N K K+ RT+FS Q+ LE F + Y+ AER LA SL +T+ QVK WF
Sbjct: 143 SFLLHNALARKPKRIRTAFSPSQLLRLEHAFEKNHYVVGAERKQLAHSLSLTETQVKVWF 202
Query: 215 QNRRTKWRRQTAEEREAERQQASR 238
QNRRTK++RQ EE ++ QQ +
Sbjct: 203 QNRRTKFKRQKLEEEGSDSQQKKK 226
>gi|4504465 homeobox B2 [Homo sapiens]
Length = 356
Score = 83.2 bits (204), Expect = 2e-16
Identities = 52/148 (35%), Positives = 72/148 (48%), Gaps = 21/148 (14%)
Query: 99 AVPPPLPSALPAMPSVPTVSSLGGLNFPWMESSRRFVKDRFTA-----AAALTPFTVTRR 153
A+PPP P LPA P P FPWM+ + K +A AA+ P +
Sbjct: 77 ALPPPPPPPLPAAPPAP--------EFPWMKEKKSAKKPSQSATSPSPAASAVPAS---G 125
Query: 154 IGHPYQNRTPPKR-----KKPRTSFSRVQICELEKRFHRQKYLASAERAALAKSLKMTDA 208
+G P P+ ++ RT+++ Q+ ELEK FH KYL R +A L +T+
Sbjct: 126 VGSPADGLGLPEAGGGGARRLRTAYTNTQLLELEKEFHFNKYLCRPRRVEIAALLDLTER 185
Query: 209 QVKTWFQNRRTKWRRQTAEEREAERQQA 236
QVK WFQNRR K +RQT + + A
Sbjct: 186 QVKVWFQNRRMKHKRQTQHREPPDGEPA 213
>gi|14149728 BarH-like homeobox 1 [Homo sapiens]
Length = 327
Score = 82.0 bits (201), Expect = 6e-16
Identities = 43/97 (44%), Positives = 61/97 (62%), Gaps = 3/97 (3%)
Query: 165 KRKKPRTSFSRVQICELEKRFHRQKYLASAERAALAKSLKMTDAQVKTWFQNRRTKWRRQ 224
K +K RT+F+ Q+ +LE+ F RQKYL+ +R LA SL +TD QVKTW+QNRRTKW+RQ
Sbjct: 177 KPRKARTAFTDHQLAQLERSFERQKYLSVQDRMELAASLNLTDTQVKTWYQNRRTKWKRQ 236
Query: 225 TAEEREAERQQASRLMLQLQHDA---FQKSLNDSIQP 258
TA E + + LQ + + +SL ++ P
Sbjct: 237 TAVGLELLAEAGNYSALQRMFPSPYFYPQSLVSNLDP 273
>gi|63054872 ladybird homeobox 1 [Homo sapiens]
Length = 281
Score = 82.0 bits (201), Expect = 6e-16
Identities = 43/81 (53%), Positives = 58/81 (71%), Gaps = 1/81 (1%)
Query: 159 QNRTPPKRKKPRTSFSRVQICELEKRFHRQKYLASAERAALAKSLKMTDAQVKTWFQNRR 218
Q +TP KR+K RT+F+ QI ELEKRF QKYL+ A+R +A+ L +T+AQV TWFQNRR
Sbjct: 118 QRQTPKKRRKSRTAFTNHQIYELEKRFLYQKYLSPADRDQIAQQLGLTNAQVITWFQNRR 177
Query: 219 TKWRRQTAEEREAERQQASRL 239
K +R EE +A+ + A +L
Sbjct: 178 AKLKRD-LEEMKADVESAKKL 197
>gi|4557673 pancreatic and duodenal homeobox 1 [Homo sapiens]
Length = 283
Score = 81.6 bits (200), Expect = 7e-16
Identities = 59/202 (29%), Positives = 84/202 (41%), Gaps = 21/202 (10%)
Query: 33 PAPR---GPDGASYLGGPPGGRPGATYPSLPASFAGLGAPFEDAGSYSVNLSLAPAGVIR 89
PAP P Y+G P P +P + P D Y V V
Sbjct: 24 PAPEFSASPPACLYMGRQPPPPPPHPFPGALGALEQGSPP--DISPYEVPPLADDPAVAH 81
Query: 90 VPAHRPLPGAVPPPLPSALP--AMPSVPTVSSLGGLNFPWMESSRRFVKDRFTAAAALTP 147
+ H P A+P P P A P V + L FPWM+S++ A A
Sbjct: 82 LHHHLPAQLALPHPPAGPFPEGAEPGVLEEPNRVQLPFPWMKSTKAHAWKGQWAGGAYAA 141
Query: 148 FTVTRRIGHPYQNRTPPKRKKPRTSFSRVQICELEKRFHRQKYLASAERAALAKSLKMTD 207
P + K+ RT+++R Q+ ELEK F KY++ R LA L +T+
Sbjct: 142 --------------EPEENKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTE 187
Query: 208 AQVKTWFQNRRTKWRRQTAEER 229
+K WFQNRR KW+++ ++R
Sbjct: 188 RHIKIWFQNRRMKWKKEEDKKR 209
>gi|118582284 msh homeobox 1 [Homo sapiens]
Length = 303
Score = 81.3 bits (199), Expect = 9e-16
Identities = 71/233 (30%), Positives = 96/233 (41%), Gaps = 39/233 (16%)
Query: 42 SYLGGPPGGRPGATYPSLPASFAGLGAPFEDAGSYSVNLSLAPAGVIRVPAHRPLPGAVP 101
S G P GG G + A+ A +GA E+ V+ SL P V + A PGA
Sbjct: 19 SAFGKPAGGGAGQAPSAAAATAAAMGAD-EEGAKPKVSPSLLPFSVEALMADHRKPGAKE 77
Query: 102 ---------------------PPLPSALPAMPSVPTVS---SLGGL-NFPWMESSRRFVK 136
PP P PS P S+GGL P VK
Sbjct: 78 SALAPSEGVQAAGGSAQPLGVPPGSLGAPDAPSSPRPLGHFSVGGLLKLP----EDALVK 133
Query: 137 DRFTAAAALTPFTVTRRIGHPYQNRTPPK---------RKKPRTSFSRVQICELEKRFHR 187
TP+ + R P R P +KPRT F+ Q+ LE++F +
Sbjct: 134 AESPEKPERTPWMQSPRFSPPPARRLSPPACTLRKHKTNRKPRTPFTTAQLLALERKFRQ 193
Query: 188 QKYLASAERAALAKSLKMTDAQVKTWFQNRRTKWRRQTAEEREAERQQASRLM 240
++YL+ AERA + SL +T+ QVK WFQNRR K +R E E + A ++
Sbjct: 194 KQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKRLQEAELEKLKMAAKPML 246
>gi|39930383 BarH-like homeobox 2 [Homo sapiens]
Length = 387
Score = 80.9 bits (198), Expect = 1e-15
Identities = 46/109 (42%), Positives = 64/109 (58%), Gaps = 12/109 (11%)
Query: 165 KRKKPRTSFSRVQICELEKRFHRQKYLASAERAALAKSLKMTDAQVKTWFQNRRTKWRRQ 224
K +K RT+FS Q+ +LE+ F RQKYL+ +R LA +L +TD QVKTW+QNRRTKW+RQ
Sbjct: 231 KPRKARTAFSDHQLNQLERSFERQKYLSVQDRMDLAAALNLTDTQVKTWYQNRRTKWKRQ 290
Query: 225 TAEEREAERQQASRLMLQLQHDAFQKSLNDSIQPDPLCLHNSSLFALQN 273
TA + L+L +A S + P P H S L ++ +
Sbjct: 291 TA------------VGLELLAEAGNYSALQRMFPSPYFYHPSLLGSMDS 327
>gi|28912912 NK6 transcription factor related, locus 2 [Homo
sapiens]
Length = 277
Score = 79.7 bits (195), Expect = 3e-15
Identities = 43/74 (58%), Positives = 51/74 (68%), Gaps = 1/74 (1%)
Query: 165 KRKKPRTSFSRVQICELEKRFHRQKYLASAERAALAKSLKMTDAQVKTWFQNRRTKWR-R 223
K+K R +FS QI LEK F + KYLA ERA LA SL MT++QVK WFQNRRTKWR R
Sbjct: 147 KKKHSRPTFSGQQIFALEKTFEQTKYLAGPERARLAYSLGMTESQVKVWFQNRRTKWRKR 206
Query: 224 QTAEEREAERQQAS 237
AE A+++Q S
Sbjct: 207 HAAEMASAKKKQDS 220
>gi|94536800 empty spiracles homolog 1 [Homo sapiens]
Length = 290
Score = 79.3 bits (194), Expect = 4e-15
Identities = 71/246 (28%), Positives = 101/246 (41%), Gaps = 19/246 (7%)
Query: 3 APASAQTPHPHEPISFGIDQILNSPDQDSAPAPRGPDGASYLGGPPGGRP----GATYPS 58
APA+A P F I+ ++ G G+ L P YP
Sbjct: 28 APAAATMFQPAAKRGFTIESLVAKDGGTGGGTGGGGAGSHLLAAAASEEPLRPTALNYPH 87
Query: 59 LPASFAGLGAPFEDAGSYSVNLSLAPAGVIRVPAHRPLPGAVPPPLPSALPAMPSVPTVS 118
A+ A + F A + SL + P P P L A P P S
Sbjct: 88 PSAAEAAFVSGFPAAAAAGAGRSLYGGPELVFPEAMNHPALTVHPAHQ-LGASPLQPPHS 146
Query: 119 SLGGLN------FPWMESSRRFVKDRFTAAAALTPFTVTRRIGHPYQNRTPPKRKKPRTS 172
G + +PW+ +R F RF A+ + + P+ K K+ RT+
Sbjct: 147 FFGAQHRDPLHFYPWVLRNR-FFGHRFQASDVPQDGLL---LHGPFAR----KPKRIRTA 198
Query: 173 FSRVQICELEKRFHRQKYLASAERAALAKSLKMTDAQVKTWFQNRRTKWRRQTAEEREAE 232
FS Q+ LE+ F + Y+ AER LA SL +++ QVK WFQNRRTK++RQ EE E
Sbjct: 199 FSPSQLLRLERAFEKNHYVVGAERKQLAGSLSLSETQVKVWFQNRRTKYKRQKLEEEGPE 258
Query: 233 RQQASR 238
+Q +
Sbjct: 259 SEQKKK 264
>gi|24497513 homeobox A3 isoform a [Homo sapiens]
Length = 443
Score = 78.6 bits (192), Expect = 6e-15
Identities = 60/215 (27%), Positives = 96/215 (44%), Gaps = 48/215 (22%)
Query: 12 PHEPISFGIDQILNSPDQDSAPAPRGPDGASYLGGPPGGRPGATYPSLPASFAGLGAPFE 71
P +P S G + P Q + PAP+ P A PP P A P AS P +
Sbjct: 79 PSQPPSLGEPPLHPPPPQAAPPAPQPPQPAPQ---PPAPTPAAPPPPSSAS------PPQ 129
Query: 72 DAGSYSVNLSLAPAGVIRVPAHRPLPGAVPPPLPSALPAMPSVPTVSSLGGLNFPWMESS 131
+A + P P +A + + PTV+ FPWM+ S
Sbjct: 130 NASNN------------------------PTPANAAKSPLLNSPTVAKQ---IFPWMKES 162
Query: 132 RRFVKDRFTAAAALTPFTVTRRIGHPYQNRTPPKR---KKPRTSFSRVQICELEKRFHRQ 188
R+ K + +++++ +++PP + K+ RT+++ Q+ ELEK FH
Sbjct: 163 RQNTKQKTSSSSSGESCA---------GDKSPPGQASSKRARTAYTSAQLVELEKEFHFN 213
Query: 189 KYLASAERAALAKSLKMTDAQVKTWFQNRRTKWRR 223
+YL R +A L +T+ Q+K WFQNRR K+++
Sbjct: 214 RYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKK 248
>gi|13562112 homeobox A3 isoform a [Homo sapiens]
Length = 443
Score = 78.6 bits (192), Expect = 6e-15
Identities = 60/215 (27%), Positives = 96/215 (44%), Gaps = 48/215 (22%)
Query: 12 PHEPISFGIDQILNSPDQDSAPAPRGPDGASYLGGPPGGRPGATYPSLPASFAGLGAPFE 71
P +P S G + P Q + PAP+ P A PP P A P AS P +
Sbjct: 79 PSQPPSLGEPPLHPPPPQAAPPAPQPPQPAPQ---PPAPTPAAPPPPSSAS------PPQ 129
Query: 72 DAGSYSVNLSLAPAGVIRVPAHRPLPGAVPPPLPSALPAMPSVPTVSSLGGLNFPWMESS 131
+A + P P +A + + PTV+ FPWM+ S
Sbjct: 130 NASNN------------------------PTPANAAKSPLLNSPTVAKQ---IFPWMKES 162
Query: 132 RRFVKDRFTAAAALTPFTVTRRIGHPYQNRTPPKR---KKPRTSFSRVQICELEKRFHRQ 188
R+ K + +++++ +++PP + K+ RT+++ Q+ ELEK FH
Sbjct: 163 RQNTKQKTSSSSSGESCA---------GDKSPPGQASSKRARTAYTSAQLVELEKEFHFN 213
Query: 189 KYLASAERAALAKSLKMTDAQVKTWFQNRRTKWRR 223
+YL R +A L +T+ Q+K WFQNRR K+++
Sbjct: 214 RYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKK 248
>gi|148746211 NK2 transcription factor related, locus 3 [Homo
sapiens]
Length = 364
Score = 77.8 bits (190), Expect = 1e-14
Identities = 36/66 (54%), Positives = 48/66 (72%)
Query: 163 PPKRKKPRTSFSRVQICELEKRFHRQKYLASAERAALAKSLKMTDAQVKTWFQNRRTKWR 222
P R+KPR FS+ Q+ ELE+RF +Q+YL++ ER LA SLK+T QVK WFQNRR K +
Sbjct: 145 PRSRRKPRVLFSQAQVFELERRFKQQRYLSAPEREHLASSLKLTSTQVKIWFQNRRYKCK 204
Query: 223 RQTAEE 228
RQ ++
Sbjct: 205 RQRQDK 210
>gi|89257348 homeo box HB9 [Homo sapiens]
Length = 401
Score = 77.8 bits (190), Expect = 1e-14
Identities = 69/210 (32%), Positives = 93/210 (44%), Gaps = 26/210 (12%)
Query: 31 SAPAPRGPDGASYLGGPPGGRPGATYPSLPASFAGLGAPFEDAGSYSVNLSLAPAGVIRV 90
+A A G LG PGG G LPA A G P YS A A +
Sbjct: 126 AAAAAAAAAGGLALGLHPGGAQGGA--GLPAQAALYGHPVY---GYS-----AAAAAAAL 175
Query: 91 PAHRPLPGAVPPPLPSALPAMPSVPTVSSLGGLNFP-WMESSRRFVKDRFTAAAALTPFT 149
P P + A PA P+ P G W+ +S TA L
Sbjct: 176 AGQHPALSYSYPQVQGAHPAHPADPIKLGAGTFQLDQWLRAS--------TAGMILPKMP 227
Query: 150 VTRRIGHPYQNRTPPKRKKPRTSFSRVQICELEKRFHRQKYLASAERAALAKSLKMTDAQ 209
Q+ K ++PRT+F+ Q+ ELE +F KYL+ +R +A SL +T+ Q
Sbjct: 228 ---DFNSQAQSNLLGKCRRPRTAFTSQQLLELEHQFKLNKYLSRPKRFEVATSLMLTETQ 284
Query: 210 VKTWFQNRRTKWRR-QTAEE---REAERQQ 235
VK WFQNRR KW+R + A+E +EAE+Q+
Sbjct: 285 VKIWFQNRRMKWKRSKKAKEQAAQEAEKQK 314
>gi|4502365 NK3 homeobox 2 [Homo sapiens]
Length = 333
Score = 77.8 bits (190), Expect = 1e-14
Identities = 39/81 (48%), Positives = 56/81 (69%), Gaps = 1/81 (1%)
Query: 164 PKRKKPRTSFSRVQICELEKRFHRQKYLASAERAALAKSLKMTDAQVKTWFQNRRTKW-R 222
P++K+ R +FS Q+ ELE+RF+ Q+YL+ ERA LA SLK+T+ QVK WFQNRR K R
Sbjct: 204 PRKKRSRAAFSHAQVFELERRFNHQRYLSGPERADLAASLKLTETQVKIWFQNRRYKTKR 263
Query: 223 RQTAEEREAERQQASRLMLQL 243
RQ A + A A ++ +++
Sbjct: 264 RQMAADLLASAPAAKKVAVKV 284
>gi|19923352 NK3 homeobox 1 [Homo sapiens]
Length = 234
Score = 77.4 bits (189), Expect = 1e-14
Identities = 41/96 (42%), Positives = 63/96 (65%), Gaps = 2/96 (2%)
Query: 157 PYQNRTPPK-RKKPRTSFSRVQICELEKRFHRQKYLASAERAALAKSLKMTDAQVKTWFQ 215
P +TP + +K+ R +FS Q+ ELE++F QKYL++ ERA LAK+LK+T+ QVK WFQ
Sbjct: 114 PRLPQTPKQPQKRSRAAFSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVKIWFQ 173
Query: 216 NRRTKWRRQTAEEREAERQQASRLMLQLQHDAFQKS 251
NRR K +R+ + ++ S L L+ +AF ++
Sbjct: 174 NRRYKTKRKQLSSELGDLEKHSSLP-ALKEEAFSRA 208
>gi|23397672 homeobox D4 [Homo sapiens]
Length = 255
Score = 77.0 bits (188), Expect = 2e-14
Identities = 59/203 (29%), Positives = 80/203 (39%), Gaps = 37/203 (18%)
Query: 37 GPDGASYLGG--------PPGGRPGATYPSLPASFAGLGAPFEDAGSYSVNLSLAPAGVI 88
G GA Y GG PPG P + P +G G P G
Sbjct: 30 GEQGADYYGGGAQGADFQPPGLYPRPDFGEQPFGGSGPGPGSALPARGHGQEPGGPGGHY 89
Query: 89 RVPAHR-PLPGAVPP-PLPSAL------PAMPSVPTVSSLGGLNFPWMESSRRFVKDRFT 140
P P P A PP PLP A P P T + +PWM+
Sbjct: 90 AAPGEPCPAPPAPPPAPLPGARAYSQSDPKQPPSGTALKQPAVVYPWMKKVH-------- 141
Query: 141 AAAALTPFTVTRRIGHPYQNRTPPKRKKPRTSFSRVQICELEKRFHRQKYLASAERAALA 200
+ N T + K+ RT+++R Q+ ELEK FH +YL R +A
Sbjct: 142 -------------VNSVNPNYTGGEPKRSRTAYTRQQVLELEKEFHFNRYLTRRRRIEIA 188
Query: 201 KSLKMTDAQVKTWFQNRRTKWRR 223
+L +++ Q+K WFQNRR KW++
Sbjct: 189 HTLCLSERQIKIWFQNRRMKWKK 211
>gi|27886557 msh homeobox 2 [Homo sapiens]
Length = 267
Score = 75.9 bits (185), Expect = 4e-14
Identities = 72/234 (30%), Positives = 105/234 (44%), Gaps = 44/234 (18%)
Query: 24 LNSPDQDSAPAPRGPDGASYLGGPPGGRPGAT------YPSLPASFAGLGA--------- 68
L SPD++ GP G PGG GA SLP S L +
Sbjct: 10 LFSPDEEGPAVVAGP------GPGPGGAEGAAEERRVKVSSLPFSVEALMSDKKPPKEAS 63
Query: 69 --PFEDAGSYSVNLSLAPAGVIRVPAHRPLPGAVPPPLPSALPAMPSVPTVSSLGGLNFP 126
P E A + + L +G AH P G + P +A SV + +S G
Sbjct: 64 PLPAESASAGATLRPLLLSGHGAREAHSP--GPLVKPFETA-----SVKSENSEDGA--A 114
Query: 127 WMESSRRFVKDRFTAAAALTPFTVTRRIGHPYQNRTPPKRKKPRTSFSRVQICELEKRFH 186
WM+ R+ ++P T T R +++T +KPRT F+ Q+ LE++F
Sbjct: 115 WMQEPGRYSPP----PRHMSPTTCTLR-----KHKT---NRKPRTPFTTSQLLALERKFR 162
Query: 187 RQKYLASAERAALAKSLKMTDAQVKTWFQNRRTKWRRQTAEEREAERQQASRLM 240
+++YL+ AERA + SL +T+ QVK WFQNRR K +R E E + A ++
Sbjct: 163 QKQYLSIAERAEFSSSLNLTETQVKIWFQNRRAKAKRLQEAELEKLKMAAKPML 216
>gi|121114296 caudal type homeobox 1 [Homo sapiens]
Length = 265
Score = 75.9 bits (185), Expect = 4e-14
Identities = 82/282 (29%), Positives = 115/282 (40%), Gaps = 45/282 (15%)
Query: 10 PHPHEPISFGIDQILNSPDQDSAPAPRGPDGASYLGGPPGGRP----GATYPSLPASFAG 65
P P P S G+ P P+ PD +SY P P GA +P+ +A
Sbjct: 15 PGPARPASLGLGPQAYGPPAPPPAPPQYPDFSSYSHVEPAPAPPTAWGAPFPAPKDDWAA 74
Query: 66 LGAPFEDAGSYS-VNLSLAPAGVIRVPAHRPLPGAVPPPLPSALPAMPSVPTVSSLGGLN 124
P A + S +L+ P P P+P A P P P L A P LGG
Sbjct: 75 AYGPGPAAPAASPASLAFGPP-----PDFSPVP-APPGPGPGLL-AQP-------LGGPG 120
Query: 125 FPWMESSRRFVKDRFTAAAALTPFTVTRRI------GHPYQNRTPPKRKKPRTSFSRVQI 178
P ++R TP+ RR G + RT K + T R+
Sbjct: 121 TPSSPGAQR-----------PTPYEWMRRSVAAGGGGGSGKTRTKDKYRVVYTDHQRL-- 167
Query: 179 CELEKRFHRQKYLASAERAALAKSLKMTDAQVKTWFQNRRTKWRRQTAEEREAERQQASR 238
ELEK FH +Y+ ++ LA +L +T+ QVK WFQNRR K R+ + ++QQ
Sbjct: 168 -ELEKEFHYSRYITIRRKSELAANLGLTERQVKIWFQNRRAKERK----VNKKKQQQQQP 222
Query: 239 LMLQLQHDAFQKSLNDSIQPDPLCLHNSSLFALQNLQPWEED 280
+ HD S+ LC N+SL A + P +E+
Sbjct: 223 PQPPMAHDITATPAGPSL--GGLCPSNTSLLATSSPMPVKEE 262
>gi|45593144 gastrulation brain homeo box 2 [Homo sapiens]
Length = 348
Score = 75.9 bits (185), Expect = 4e-14
Identities = 34/74 (45%), Positives = 51/74 (68%)
Query: 165 KRKKPRTSFSRVQICELEKRFHRQKYLASAERAALAKSLKMTDAQVKTWFQNRRTKWRRQ 224
K ++ RT+F+ Q+ ELEK FH +KYL+ ER+ +A +LK+++ QVK WFQNRR KW+R
Sbjct: 246 KNRRRRTAFTSEQLLELEKEFHCKKYLSLTERSQIAHALKLSEVQVKIWFQNRRAKWKRV 305
Query: 225 TAEEREAERQQASR 238
A ++ + SR
Sbjct: 306 KAGNANSKTGEPSR 319
>gi|10140847 homeobox A2 [Homo sapiens]
Length = 376
Score = 75.5 bits (184), Expect = 5e-14
Identities = 46/142 (32%), Positives = 66/142 (46%), Gaps = 7/142 (4%)
Query: 91 PAHRPLPGAVPPPLPSALPAMPSVPTVSSLGGLNFPWMESSRRFVKDRFTAAAALT---- 146
P P GA P PS + S +L +PWM+ + K AAA
Sbjct: 61 PGSHPRHGAGGRPKPSPAGSRGSPVPAGALQPPEYPWMKEKKAAKKTALLPAAAAAATAA 120
Query: 147 ---PFTVTRRIGHPYQNRTPPKRKKPRTSFSRVQICELEKRFHRQKYLASAERAALAKSL 203
P ++ + + + ++ RT+++ Q+ ELEK FH KYL R +A L
Sbjct: 121 ATGPACLSHKESLEIADGSGGGSRRLRTAYTNTQLLELEKEFHFNKYLCRPRRVEIAALL 180
Query: 204 KMTDAQVKTWFQNRRTKWRRQT 225
+T+ QVK WFQNRR K +RQT
Sbjct: 181 DLTERQVKVWFQNRRMKHKRQT 202
>gi|4758090 NK2 transcription factor related, locus 5 [Homo sapiens]
Length = 324
Score = 74.7 bits (182), Expect = 9e-14
Identities = 34/64 (53%), Positives = 47/64 (73%)
Query: 165 KRKKPRTSFSRVQICELEKRFHRQKYLASAERAALAKSLKMTDAQVKTWFQNRRTKWRRQ 224
+R+KPR FS+ Q+ ELE+RF +Q+YL++ ER LA LK+T QVK WFQNRR K +RQ
Sbjct: 137 RRRKPRVLFSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKCKRQ 196
Query: 225 TAEE 228
++
Sbjct: 197 RQDQ 200
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.131 0.397
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,717,722
Number of Sequences: 37866
Number of extensions: 822588
Number of successful extensions: 9296
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 350
Number of HSP's successfully gapped in prelim test: 488
Number of HSP's that attempted gapping in prelim test: 5942
Number of HSP's gapped (non-prelim): 3022
length of query: 291
length of database: 18,247,518
effective HSP length: 101
effective length of query: 190
effective length of database: 14,423,052
effective search space: 2740379880
effective search space used: 2740379880
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.