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Search of human proteins with 50345881
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|50345881 cytoplasmic polyadenylation element binding protein
3 [Homo sapiens]
(698 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|50345881 cytoplasmic polyadenylation element binding protein ... 1455 0.0
gi|189027090 cytoplasmic polyadenylation element binding protein... 738 0.0
gi|33188441 cytoplasmic polyadenylation element binding protein ... 726 0.0
gi|33188439 cytoplasmic polyadenylation element binding protein ... 711 0.0
gi|119395725 cytoplasmic polyadenylation element binding protein... 214 2e-55
gi|119395722 cytoplasmic polyadenylation element binding protein... 214 2e-55
gi|119395720 cytoplasmic polyadenylation element binding protein... 214 2e-55
gi|119395718 cytoplasmic polyadenylation element binding protein... 208 1e-53
gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 68 3e-11
gi|91208418 transcription elongation regulator 1 isoform 2 [Homo... 64 4e-10
gi|21327715 transcription elongation regulator 1 isoform 1 [Homo... 64 4e-10
gi|112734870 hypothetical protein LOC57648 [Homo sapiens] 64 6e-10
gi|4826998 splicing factor proline/glutamine rich (polypyrimidin... 60 5e-09
gi|150417989 cyclin K isoform 1 [Homo sapiens] 60 5e-09
gi|149773456 hypothetical protein LOC643314 [Homo sapiens] 60 9e-09
gi|21312134 mediator complex subunit 15 isoform b [Homo sapiens] 59 1e-08
gi|163965366 nascent polypeptide-associated complex alpha subuni... 59 1e-08
gi|163914392 glioma tumor suppressor candidate region gene 1 [Ho... 59 2e-08
gi|110832843 TBP-associated factor 4 [Homo sapiens] 58 3e-08
gi|112382226 atrophin-1 like protein isoform b [Homo sapiens] 57 4e-08
gi|112382224 atrophin-1 like protein isoform a [Homo sapiens] 57 4e-08
gi|112382216 atrophin-1 like protein isoform a [Homo sapiens] 57 4e-08
gi|146134388 YLP motif containing 1 [Homo sapiens] 57 4e-08
gi|10863899 numb homolog (Drosophila)-like [Homo sapiens] 57 8e-08
gi|55750053 atrophin-1 [Homo sapiens] 56 1e-07
gi|55750041 atrophin-1 [Homo sapiens] 56 1e-07
gi|41349482 proline-rich protein BstNI subfamily 1 isoform 1 pre... 56 1e-07
gi|32698936 B-cell CLL/lymphoma 9-like [Homo sapiens] 56 1e-07
gi|61966923 forkhead box B2 [Homo sapiens] 56 1e-07
gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo sapi... 55 2e-07
>gi|50345881 cytoplasmic polyadenylation element binding protein 3
[Homo sapiens]
Length = 698
Score = 1455 bits (3767), Expect = 0.0
Identities = 698/698 (100%), Positives = 698/698 (100%)
Query: 1 MQDDLLMDKSKTQPQPQQQQRQQQQPQPESSVSEAPSTPLSSETPKPEENSAVPALSPAA 60
MQDDLLMDKSKTQPQPQQQQRQQQQPQPESSVSEAPSTPLSSETPKPEENSAVPALSPAA
Sbjct: 1 MQDDLLMDKSKTQPQPQQQQRQQQQPQPESSVSEAPSTPLSSETPKPEENSAVPALSPAA 60
Query: 61 APPAPNGPDKMQMESPLLPGLSFHQPPQQPPPPQEPAAPGASLSPSFGSTWSTGTTNAVE 120
APPAPNGPDKMQMESPLLPGLSFHQPPQQPPPPQEPAAPGASLSPSFGSTWSTGTTNAVE
Sbjct: 61 APPAPNGPDKMQMESPLLPGLSFHQPPQQPPPPQEPAAPGASLSPSFGSTWSTGTTNAVE 120
Query: 121 DSFFQGITPVNGTMLFQNFPHHVNPVFGGTFSPQIGLAQTQHHQQPPPPAPAPQPAQPAQ 180
DSFFQGITPVNGTMLFQNFPHHVNPVFGGTFSPQIGLAQTQHHQQPPPPAPAPQPAQPAQ
Sbjct: 121 DSFFQGITPVNGTMLFQNFPHHVNPVFGGTFSPQIGLAQTQHHQQPPPPAPAPQPAQPAQ 180
Query: 181 PPQAQPPQQRRSPASPSQAPYAQRSAAAAYGHQPIMTSKPSSSSAVAAAAAAAAASSASS 240
PPQAQPPQQRRSPASPSQAPYAQRSAAAAYGHQPIMTSKPSSSSAVAAAAAAAAASSASS
Sbjct: 181 PPQAQPPQQRRSPASPSQAPYAQRSAAAAYGHQPIMTSKPSSSSAVAAAAAAAAASSASS 240
Query: 241 SWNTHQSVNAAWSAPSNPWGGLQAGRDPRRAVGVGVGVGVGVPSPLNPISPLKKPFSSNV 300
SWNTHQSVNAAWSAPSNPWGGLQAGRDPRRAVGVGVGVGVGVPSPLNPISPLKKPFSSNV
Sbjct: 241 SWNTHQSVNAAWSAPSNPWGGLQAGRDPRRAVGVGVGVGVGVPSPLNPISPLKKPFSSNV 300
Query: 301 IAPPKFPRAAPLTSKSWMEDNAFRTDNGNNLLPFQDRSRPYDTFNLHSLENSLMDMIRTD 360
IAPPKFPRAAPLTSKSWMEDNAFRTDNGNNLLPFQDRSRPYDTFNLHSLENSLMDMIRTD
Sbjct: 301 IAPPKFPRAAPLTSKSWMEDNAFRTDNGNNLLPFQDRSRPYDTFNLHSLENSLMDMIRTD 360
Query: 361 HEPLKGKHYPPSGPPMSFADIMWRNHFAGRMGINFHHPGTDNIMALNNAFLDDSHGDQAL 420
HEPLKGKHYPPSGPPMSFADIMWRNHFAGRMGINFHHPGTDNIMALNNAFLDDSHGDQAL
Sbjct: 361 HEPLKGKHYPPSGPPMSFADIMWRNHFAGRMGINFHHPGTDNIMALNNAFLDDSHGDQAL 420
Query: 421 SSGLSSPTRCQNGERVERYSRKVFVGGLPPDIDEDEITASFRRFGPLVVDWPHKAESKSY 480
SSGLSSPTRCQNGERVERYSRKVFVGGLPPDIDEDEITASFRRFGPLVVDWPHKAESKSY
Sbjct: 421 SSGLSSPTRCQNGERVERYSRKVFVGGLPPDIDEDEITASFRRFGPLVVDWPHKAESKSY 480
Query: 481 FPPKGYAFLLFQEESSVQALIDACLEEDGKLYLCVSSPTIKDKPVQIRPWNLSDSDFVMD 540
FPPKGYAFLLFQEESSVQALIDACLEEDGKLYLCVSSPTIKDKPVQIRPWNLSDSDFVMD
Sbjct: 481 FPPKGYAFLLFQEESSVQALIDACLEEDGKLYLCVSSPTIKDKPVQIRPWNLSDSDFVMD 540
Query: 541 GSQPLDPRKTIFVGGVPRPLRAVELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFSN 600
GSQPLDPRKTIFVGGVPRPLRAVELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFSN
Sbjct: 541 GSQPLDPRKTIFVGGVPRPLRAVELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFSN 600
Query: 601 QQSYIAAISARFVQLQHNDIDKRVEVKPYVLDDQMCDECQGTRCGGKFAPFFCANVTCLQ 660
QQSYIAAISARFVQLQHNDIDKRVEVKPYVLDDQMCDECQGTRCGGKFAPFFCANVTCLQ
Sbjct: 601 QQSYIAAISARFVQLQHNDIDKRVEVKPYVLDDQMCDECQGTRCGGKFAPFFCANVTCLQ 660
Query: 661 YYCEYCWASIHSRAGREFHKPLVKEGGDRPRHVPFRWS 698
YYCEYCWASIHSRAGREFHKPLVKEGGDRPRHVPFRWS
Sbjct: 661 YYCEYCWASIHSRAGREFHKPLVKEGGDRPRHVPFRWS 698
>gi|189027090 cytoplasmic polyadenylation element binding protein 4
[Homo sapiens]
Length = 729
Score = 738 bits (1906), Expect = 0.0
Identities = 418/726 (57%), Positives = 489/726 (67%), Gaps = 94/726 (12%)
Query: 1 MQDDLL-MDKSKTQPQPQQQ--QRQQQQPQPESSVSEAPSTPLSSETPKPEENSAVPALS 57
+QD++L +K+K+Q Q QQ ++QQ P P P T E K EEN +
Sbjct: 70 IQDEILGSEKAKSQQQEQQDPLEKQQLSPSPGQEAGILPET----EKAKSEENQGDNSSE 125
Query: 58 PAAAPPAPNGPDKMQMESPLLPGLSFHQPPQQPPPPQEPAAPGASLSPSFGSTWS----- 112
NG +K+++ESP+L G + + Q P AS F S WS
Sbjct: 126 NG------NGKEKIRIESPVLTGFDYQEATGLGTSTQ-PLTSSASSLTGF-SNWSAAIAP 177
Query: 113 TGTTNAVEDS--FFQGITPV----NGTMLFQNFPHHVNPVFGGTFSPQIGLAQTQHHQQP 166
+ +T ED+ F QG P NG +LFQNFPHHV+P FGG+FSPQIG +QHH
Sbjct: 178 SSSTIINEDASFFHQGGVPAASANNGALLFQNFPHHVSPGFGGSFSPQIG-PLSQHHPHH 236
Query: 167 PPPAPAPQPAQPAQPPQAQPPQQRRSPASPSQAPYAQRSAAAAYGHQPIMTSKPSSSSAV 226
P Q +Q QQRRSPASP P+ R+AA + P + +
Sbjct: 237 PH----------FQHHHSQHQQQRRSPASPHPPPFTHRNAA--FNQLPHLANN------- 277
Query: 227 AAAAAAAAASSASSSWNTHQSVNAAWSAPSNP-------WGGLQAGRDPRRAVGVGVGVG 279
+ S W+++QS + S+ +P WGG Q GRD RR + G+
Sbjct: 278 --------LNKPPSPWSSYQSPSPTPSSSWSPGGGGYGGWGGSQ-GRDHRRGLNGGI--- 325
Query: 280 VGVPSPLNPISPLKKPFSSNVIAPPKFPR-AAPLTSKSWMEDNAFRTDNGNNLLPFQDRS 338
+PLN ISPLKK F+SN I K+ R ++ KSWMED+ R DN + PF DR
Sbjct: 326 ----TPLNSISPLKKNFASNHIQLQKYARPSSAFAPKSWMEDSLNRADN---IFPFPDRP 378
Query: 339 RPYDTFNLHSLENSLMDMIRTDHEPLKGK---HYPPSGPPMSFADIMWRNHFAGRMGINF 395
R TF++HSLE+SL+D++R +++ +KG+ YP S + ++ GR
Sbjct: 379 R---TFDMHSLESSLIDIMRAENDTIKGRLNYSYPGSD-----SSLLINARTYGR----- 425
Query: 396 HHPGTDNIMALNNAFLDDSHGDQALSSGLSSPTRC---QNGERVERYSRKVFVGGLPPDI 452
G ++ + + FLDD GDQ L SGL SP C QNGERVERYSRKVFVGGLPPDI
Sbjct: 426 -RRGQSSLFPMEDGFLDDGRGDQPLHSGLGSP-HCFSHQNGERVERYSRKVFVGGLPPDI 483
Query: 453 DEDEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACLEEDGKLY 512
DEDEITASFRRFGPL+VDWPHKAESKSYFPPKGYAFLLFQ+ESSVQALIDAC+EEDGKLY
Sbjct: 484 DEDEITASFRRFGPLIVDWPHKAESKSYFPPKGYAFLLFQDESSVQALIDACIEEDGKLY 543
Query: 513 LCVSSPTIKDKPVQIRPWNLSDSDFVMDGSQPLDPRKTIFVGGVPRPLRAVELAMIMDRL 572
LCVSSPTIKDKPVQIRPWNLSDSDFVMDGSQPLDPRKTIFVGGVPRPLRAVELAMIMDRL
Sbjct: 544 LCVSSPTIKDKPVQIRPWNLSDSDFVMDGSQPLDPRKTIFVGGVPRPLRAVELAMIMDRL 603
Query: 573 YGGVCYAGIDTDPELKYPKGAGRVAFSNQQSYIAAISARFVQLQHNDIDKRVEVKPYVLD 632
YGGVCYAGIDTDPELKYPKGAGRVAFSNQQSYIAAISARFVQLQH +IDKRVEVKPYVLD
Sbjct: 604 YGGVCYAGIDTDPELKYPKGAGRVAFSNQQSYIAAISARFVQLQHGEIDKRVEVKPYVLD 663
Query: 633 DQMCDECQGTRCGGKFAPFFCANVTCLQYYCEYCWASIHSRAGREFHKPLVKEGGDRPRH 692
DQ+CDECQG RCGGKFAPFFCANVTCLQYYCEYCWA+IHSRAGREFHKPLVKEGGDRPRH
Sbjct: 664 DQLCDECQGARCGGKFAPFFCANVTCLQYYCEYCWAAIHSRAGREFHKPLVKEGGDRPRH 723
Query: 693 VPFRWS 698
+ FRW+
Sbjct: 724 ISFRWN 729
>gi|33188441 cytoplasmic polyadenylation element binding protein 2
isoform A [Homo sapiens]
Length = 559
Score = 726 bits (1875), Expect = 0.0
Identities = 391/630 (62%), Positives = 435/630 (69%), Gaps = 110/630 (17%)
Query: 104 SPSFGSTWSTGTTNAVEDSFFQGITPVNGTMLFQNFPHHVNPV-----------FGGTFS 152
SP + + G +++ +FF +PV+ PH + FGG FS
Sbjct: 5 SPDSENGFYPGLPSSMNPAFFPSFSPVS--------PHGCTGLSVPTSGGGGGGFGGPFS 56
Query: 153 PQIGLAQTQHHQQPPPPAPAPQPAQPAQPPQAQP--PQQRRSPASPSQAPYAQRSAAA-- 208
PPPP PA Q PP A P PQ RRSP SP Q +AAA
Sbjct: 57 ATA---------VPPPPPPAMNIPQQQPPPPAAPQQPQSRRSPVSPQLQQQHQAAAAAFL 107
Query: 209 ----AYGH-QPIMTSKPSSSSAVAAAAAAAAASSASSSWNTHQSVNAAWSAPSNPWGGLQ 263
+Y H QP++ P W+ HQS + W S WG +
Sbjct: 108 QQRNSYNHHQPLLKQSP---------------------WSNHQS--SGWGTGSMSWGAMH 144
Query: 264 AGRDPRRAVGVGVGVGVGVPSPLNPISPLKKPFSSNVIAPPKFPRAAP-LTSKSWMEDNA 322
GRD RR +G+ P +N ISPLKKPFS NVIAPPKF R+ P LT KSW+EDN
Sbjct: 145 -GRDHRRTGNMGI------PGTMNQISPLKKPFSGNVIAPPKFTRSTPSLTPKSWIEDNV 197
Query: 323 FRTDNGNN-LLPFQDRSRPYDTFNLHSLENSLMDMIRTDHEPLKGKHYPPSGPPMSFADI 381
FRTDN +N LLP QDRSR YD+ N+HSLENSL+D++R +H+PLKG+
Sbjct: 198 FRTDNNSNTLLPLQDRSRMYDSLNMHSLENSLIDIMRAEHDPLKGR-------------- 243
Query: 382 MWRNHFAGRMGINFHHPGTDNIMALN---------NAFLDDSHGDQALSSGLSSPTRC-- 430
+++ HPGTDN++ LN + LDD H DQ L+SPT C
Sbjct: 244 -----------LSYPHPGTDNLLMLNGRSSLFPIDDGLLDDGHSDQV--GVLNSPT-CYS 289
Query: 431 --QNGERVERYSRKVFVGGLPPDIDEDEITASFRRFGPLVVDWPHKAESKSYFPPKGYAF 488
QNGER+ER+SRKVFVGGLPPDIDEDEITASFRRFGPLVVDWPHKAESKSYFPPKGYAF
Sbjct: 290 AHQNGERIERFSRKVFVGGLPPDIDEDEITASFRRFGPLVVDWPHKAESKSYFPPKGYAF 349
Query: 489 LLFQEESSVQALIDACLEEDGKLYLCVSSPTIKDKPVQIRPWNLSDSDFVMDGSQPLDPR 548
LLFQEESSVQALIDAC+EEDGKLYLCVSSPTIKDKPVQIRPWNLSDSDFVMDGSQPLDPR
Sbjct: 350 LLFQEESSVQALIDACIEEDGKLYLCVSSPTIKDKPVQIRPWNLSDSDFVMDGSQPLDPR 409
Query: 549 KTIFVGGVPRPLRAVELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFSNQQSYIAAI 608
KTIFVGGVPRPLRAVELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFSNQQSYIAAI
Sbjct: 410 KTIFVGGVPRPLRAVELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFSNQQSYIAAI 469
Query: 609 SARFVQLQHNDIDKRVEVKPYVLDDQMCDECQGTRCGGKFAPFFCANVTCLQYYCEYCWA 668
SARFVQLQH DIDKRVEVKPYVLDDQMCDECQG RCGGKFAPFFCANVTCLQYYCE+CWA
Sbjct: 470 SARFVQLQHGDIDKRVEVKPYVLDDQMCDECQGARCGGKFAPFFCANVTCLQYYCEFCWA 529
Query: 669 SIHSRAGREFHKPLVKEGGDRPRHVPFRWS 698
+IHSRAGREFHKPLVKEG DRPR + FRW+
Sbjct: 530 NIHSRAGREFHKPLVKEGADRPRQIHFRWN 559
Score = 32.7 bits (73), Expect = 1.2
Identities = 25/97 (25%), Positives = 36/97 (37%), Gaps = 27/97 (27%)
Query: 26 PQPESSVSEAPSTPLSSETPKPEENSAVPALSPAAAPPAPNGPDKMQMES---------- 75
P P+S P P S PA P+ +P +P+G + + +
Sbjct: 4 PSPDSENGFYPGLPSSMN----------PAFFPSFSPVSPHGCTGLSVPTSGGGGGGFGG 53
Query: 76 -------PLLPGLSFHQPPQQPPPPQEPAAPGASLSP 105
P P + + P QQPPPP P P + SP
Sbjct: 54 PFSATAVPPPPPPAMNIPQQQPPPPAAPQQPQSRRSP 90
>gi|33188439 cytoplasmic polyadenylation element binding protein 2
isoform B [Homo sapiens]
Length = 589
Score = 711 bits (1834), Expect = 0.0
Identities = 391/660 (59%), Positives = 435/660 (65%), Gaps = 140/660 (21%)
Query: 104 SPSFGSTWSTGTTNAVEDSFFQGITPVNGTMLFQNFPHHVNPV-----------FGGTFS 152
SP + + G +++ +FF +PV+ PH + FGG FS
Sbjct: 5 SPDSENGFYPGLPSSMNPAFFPSFSPVS--------PHGCTGLSVPTSGGGGGGFGGPFS 56
Query: 153 PQIGLAQTQHHQQPPPPAPAPQPAQPAQPPQAQP--PQQRRSPASPSQAPYAQRSAAA-- 208
PPPP PA Q PP A P PQ RRSP SP Q +AAA
Sbjct: 57 ATA---------VPPPPPPAMNIPQQQPPPPAAPQQPQSRRSPVSPQLQQQHQAAAAAFL 107
Query: 209 ----AYGH-QPIMTSKPSSSSAVAAAAAAAAASSASSSWNTHQSVNAAWSAPSNPWGGLQ 263
+Y H QP++ P W+ HQS + W S WG +
Sbjct: 108 QQRNSYNHHQPLLKQSP---------------------WSNHQS--SGWGTGSMSWGAMH 144
Query: 264 AGRDPRRAVGVGVGVGVGVPSPLNPISPLKKPFSSNVIAPPKFPRAAP-LTSKSWMEDNA 322
GRD RR +G+ P +N ISPLKKPFS NVIAPPKF R+ P LT KSW+EDN
Sbjct: 145 -GRDHRRTGNMGI------PGTMNQISPLKKPFSGNVIAPPKFTRSTPSLTPKSWIEDNV 197
Query: 323 FRTDNGNN-LLPFQ------------------------------DRSRPYDTFNLHSLEN 351
FRTDN +N LLP Q DRSR YD+ N+HSLEN
Sbjct: 198 FRTDNNSNTLLPLQVRSSLQLPAWGSDSLQDSWCTAAGTSRIDQDRSRMYDSLNMHSLEN 257
Query: 352 SLMDMIRTDHEPLKGKHYPPSGPPMSFADIMWRNHFAGRMGINFHHPGTDNIMALN---- 407
SL+D++R +H+PLKG+ +++ HPGTDN++ LN
Sbjct: 258 SLIDIMRAEHDPLKGR-------------------------LSYPHPGTDNLLMLNGRSS 292
Query: 408 -----NAFLDDSHGDQALSSGLSSPTRC----QNGERVERYSRKVFVGGLPPDIDEDEIT 458
+ LDD H DQ L+SPT C QNGER+ER+SRKVFVGGLPPDIDEDEIT
Sbjct: 293 LFPIDDGLLDDGHSDQV--GVLNSPT-CYSAHQNGERIERFSRKVFVGGLPPDIDEDEIT 349
Query: 459 ASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACLEEDGKLYLCVSSP 518
ASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDAC+EEDGKLYLCVSSP
Sbjct: 350 ASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACIEEDGKLYLCVSSP 409
Query: 519 TIKDKPVQIRPWNLSDSDFVMDGSQPLDPRKTIFVGGVPRPLRAVELAMIMDRLYGGVCY 578
TIKDKPVQIRPWNLSDSDFVMDGSQPLDPRKTIFVGGVPRPLRAVELAMIMDRLYGGVCY
Sbjct: 410 TIKDKPVQIRPWNLSDSDFVMDGSQPLDPRKTIFVGGVPRPLRAVELAMIMDRLYGGVCY 469
Query: 579 AGIDTDPELKYPKGAGRVAFSNQQSYIAAISARFVQLQHNDIDKRVEVKPYVLDDQMCDE 638
AGIDTDPELKYPKGAGRVAFSNQQSYIAAISARFVQLQH DIDKRVEVKPYVLDDQMCDE
Sbjct: 470 AGIDTDPELKYPKGAGRVAFSNQQSYIAAISARFVQLQHGDIDKRVEVKPYVLDDQMCDE 529
Query: 639 CQGTRCGGKFAPFFCANVTCLQYYCEYCWASIHSRAGREFHKPLVKEGGDRPRHVPFRWS 698
CQG RCGGKFAPFFCANVTCLQYYCE+CWA+IHSRAGREFHKPLVKEG DRPR + FRW+
Sbjct: 530 CQGARCGGKFAPFFCANVTCLQYYCEFCWANIHSRAGREFHKPLVKEGADRPRQIHFRWN 589
Score = 32.7 bits (73), Expect = 1.2
Identities = 25/97 (25%), Positives = 36/97 (37%), Gaps = 27/97 (27%)
Query: 26 PQPESSVSEAPSTPLSSETPKPEENSAVPALSPAAAPPAPNGPDKMQMES---------- 75
P P+S P P S PA P+ +P +P+G + + +
Sbjct: 4 PSPDSENGFYPGLPSSMN----------PAFFPSFSPVSPHGCTGLSVPTSGGGGGGFGG 53
Query: 76 -------PLLPGLSFHQPPQQPPPPQEPAAPGASLSP 105
P P + + P QQPPPP P P + SP
Sbjct: 54 PFSATAVPPPPPPAMNIPQQQPPPPAAPQQPQSRRSP 90
>gi|119395725 cytoplasmic polyadenylation element binding protein 1
isoform 1 [Homo sapiens]
Length = 561
Score = 214 bits (546), Expect = 2e-55
Identities = 115/257 (44%), Positives = 159/257 (61%), Gaps = 13/257 (5%)
Query: 439 YSRKVFVGGLPPDIDEDEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQEESSVQ 498
YS KVF+GG+P DI E + +FR FG L V+WP K PPKGY +L+F+ E SV+
Sbjct: 309 YSCKVFLGGVPWDITEAGLVNTFRVFGSLSVEWPGKDGKHPRCPPKGYVYLVFELEKSVR 368
Query: 499 ALIDAC----LEEDG--KLYLCVSSPTIKDKPVQIRPWNLSDSDFVMDGSQPLDPRKTIF 552
+L+ AC L DG + Y +SS ++ K VQ+ PW L+DS+FV SQ LDP +T+F
Sbjct: 369 SLLQACSHDPLSPDGLSEYYFKMSSRRMRCKEVQVIPWVLADSNFVRSPSQRLDPSRTVF 428
Query: 553 VGGVPRPLRAVELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFSNQQSYIAAISARF 612
VG + L A LA I++ L+GGV YAGIDTD KYP G+GRV F+NQ+SY+ A+SA F
Sbjct: 429 VGALHGMLNAEALAAILNDLFGGVVYAGIDTDKH-KYPIGSGRVTFNNQRSYLKAVSAAF 487
Query: 613 VQLQHNDIDKRVEVKPYVLDDQMCDECQGTRCGGKFAPFFCANVTCLQYYCEYCWASIHS 672
V+++ K+V++ PY L+D +C C + PFFC + C +Y+C CW HS
Sbjct: 488 VEIKTTKFTKKVQIDPY-LEDSLCH-----ICSSQPGPFFCRDQVCFKYFCRSCWHWRHS 541
Query: 673 RAGREFHKPLVKEGGDR 689
G H PL++ +R
Sbjct: 542 MEGLRHHSPLMRNQKNR 558
>gi|119395722 cytoplasmic polyadenylation element binding protein 1
isoform 3 [Homo sapiens]
Length = 486
Score = 214 bits (546), Expect = 2e-55
Identities = 115/257 (44%), Positives = 159/257 (61%), Gaps = 13/257 (5%)
Query: 439 YSRKVFVGGLPPDIDEDEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQEESSVQ 498
YS KVF+GG+P DI E + +FR FG L V+WP K PPKGY +L+F+ E SV+
Sbjct: 234 YSCKVFLGGVPWDITEAGLVNTFRVFGSLSVEWPGKDGKHPRCPPKGYVYLVFELEKSVR 293
Query: 499 ALIDAC----LEEDG--KLYLCVSSPTIKDKPVQIRPWNLSDSDFVMDGSQPLDPRKTIF 552
+L+ AC L DG + Y +SS ++ K VQ+ PW L+DS+FV SQ LDP +T+F
Sbjct: 294 SLLQACSHDPLSPDGLSEYYFKMSSRRMRCKEVQVIPWVLADSNFVRSPSQRLDPSRTVF 353
Query: 553 VGGVPRPLRAVELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFSNQQSYIAAISARF 612
VG + L A LA I++ L+GGV YAGIDTD KYP G+GRV F+NQ+SY+ A+SA F
Sbjct: 354 VGALHGMLNAEALAAILNDLFGGVVYAGIDTDKH-KYPIGSGRVTFNNQRSYLKAVSAAF 412
Query: 613 VQLQHNDIDKRVEVKPYVLDDQMCDECQGTRCGGKFAPFFCANVTCLQYYCEYCWASIHS 672
V+++ K+V++ PY L+D +C C + PFFC + C +Y+C CW HS
Sbjct: 413 VEIKTTKFTKKVQIDPY-LEDSLCH-----ICSSQPGPFFCRDQVCFKYFCRSCWHWRHS 466
Query: 673 RAGREFHKPLVKEGGDR 689
G H PL++ +R
Sbjct: 467 MEGLRHHSPLMRNQKNR 483
>gi|119395720 cytoplasmic polyadenylation element binding protein 1
isoform 3 [Homo sapiens]
Length = 486
Score = 214 bits (546), Expect = 2e-55
Identities = 115/257 (44%), Positives = 159/257 (61%), Gaps = 13/257 (5%)
Query: 439 YSRKVFVGGLPPDIDEDEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQEESSVQ 498
YS KVF+GG+P DI E + +FR FG L V+WP K PPKGY +L+F+ E SV+
Sbjct: 234 YSCKVFLGGVPWDITEAGLVNTFRVFGSLSVEWPGKDGKHPRCPPKGYVYLVFELEKSVR 293
Query: 499 ALIDAC----LEEDG--KLYLCVSSPTIKDKPVQIRPWNLSDSDFVMDGSQPLDPRKTIF 552
+L+ AC L DG + Y +SS ++ K VQ+ PW L+DS+FV SQ LDP +T+F
Sbjct: 294 SLLQACSHDPLSPDGLSEYYFKMSSRRMRCKEVQVIPWVLADSNFVRSPSQRLDPSRTVF 353
Query: 553 VGGVPRPLRAVELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFSNQQSYIAAISARF 612
VG + L A LA I++ L+GGV YAGIDTD KYP G+GRV F+NQ+SY+ A+SA F
Sbjct: 354 VGALHGMLNAEALAAILNDLFGGVVYAGIDTDKH-KYPIGSGRVTFNNQRSYLKAVSAAF 412
Query: 613 VQLQHNDIDKRVEVKPYVLDDQMCDECQGTRCGGKFAPFFCANVTCLQYYCEYCWASIHS 672
V+++ K+V++ PY L+D +C C + PFFC + C +Y+C CW HS
Sbjct: 413 VEIKTTKFTKKVQIDPY-LEDSLCH-----ICSSQPGPFFCRDQVCFKYFCRSCWHWRHS 466
Query: 673 RAGREFHKPLVKEGGDR 689
G H PL++ +R
Sbjct: 467 MEGLRHHSPLMRNQKNR 483
>gi|119395718 cytoplasmic polyadenylation element binding protein 1
isoform 2 [Homo sapiens]
Length = 491
Score = 208 bits (530), Expect = 1e-53
Identities = 115/262 (43%), Positives = 159/262 (60%), Gaps = 18/262 (6%)
Query: 439 YSRKVFVGGLPPDIDEDEITASFRRFGPLVVDWPHKAESKSYFPPKG-----YAFLLFQE 493
YS KVF+GG+P DI E + +FR FG L V+WP K PPKG Y +L+F+
Sbjct: 234 YSCKVFLGGVPWDITEAGLVNTFRVFGSLSVEWPGKDGKHPRCPPKGNMPKGYVYLVFEL 293
Query: 494 ESSVQALIDAC----LEEDG--KLYLCVSSPTIKDKPVQIRPWNLSDSDFVMDGSQPLDP 547
E SV++L+ AC L DG + Y +SS ++ K VQ+ PW L+DS+FV SQ LDP
Sbjct: 294 EKSVRSLLQACSHDPLSPDGLSEYYFKMSSRRMRCKEVQVIPWVLADSNFVRSPSQRLDP 353
Query: 548 RKTIFVGGVPRPLRAVELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFSNQQSYIAA 607
+T+FVG + L A LA I++ L+GGV YAGIDTD KYP G+GRV F+NQ+SY+ A
Sbjct: 354 SRTVFVGALHGMLNAEALAAILNDLFGGVVYAGIDTDKH-KYPIGSGRVTFNNQRSYLKA 412
Query: 608 ISARFVQLQHNDIDKRVEVKPYVLDDQMCDECQGTRCGGKFAPFFCANVTCLQYYCEYCW 667
+SA FV+++ K+V++ PY L+D +C C + PFFC + C +Y+C CW
Sbjct: 413 VSAAFVEIKTTKFTKKVQIDPY-LEDSLCH-----ICSSQPGPFFCRDQVCFKYFCRSCW 466
Query: 668 ASIHSRAGREFHKPLVKEGGDR 689
HS G H PL++ +R
Sbjct: 467 HWRHSMEGLRHHSPLMRNQKNR 488
>gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 1124
Score = 68.2 bits (165), Expect = 3e-11
Identities = 96/318 (30%), Positives = 120/318 (37%), Gaps = 41/318 (12%)
Query: 11 KTQPQPQQQQRQQQQPQPESSVSEAPSTPLSSETPKPEENSAVPALSPAAAPPAPNGPDK 70
+T P + P P +AP +PL+ TP PE S++ A P APPA P
Sbjct: 547 QTASAPLTTPHLETPPCPAPCPLQAPPSPLT--TPPPETPSSI-ATPPPQAPPALASPPL 603
Query: 71 MQMESPLLPGLSFHQPPQQPP-----PPQEPAAPGASLSPSFGSTWSTGTTNAVEDSFFQ 125
+ SP L L+ PPQ PP P Q P +P AS S +T S NA+ Q
Sbjct: 604 QGLPSPPLSPLAT-PPPQAPPXLALPPLQAPPSPPASPPLSPLATPSPQAPNALAVHLLQ 662
Query: 126 GITPVNGTMLFQNFPHH-VNPVFGGTFSPQIGLAQTQHHQQPP----PPAPAPQ--PAQP 178
F P V F SP + + T Q PP PP P PA P
Sbjct: 663 AP--------FSPPPSPPVQAPFSPPASPPVSPSATPPSQAPPSLAAPPLQVPPSPPASP 714
Query: 179 AQPPQAQPPQQRRSP--ASPSQAPYAQRSAAAAYGHQPIMTSKPSSSSAVAAAAAAAAAS 236
P A PP Q P A P Q P S A+ P T P +AA S
Sbjct: 715 PMSPSATPPPQAPPPLAAPPLQVP---PSPPASPPMSPSATPPPRVPPLLAAPPLQVPPS 771
Query: 237 SASSSWNTHQSVNAAWSAPSNPWGGLQAGRDPRRAVGVGVGVGVGVPSPLNPISPLKKPF 296
+S + + + P+ LQA P + G PS P+SPL P
Sbjct: 772 PPASLPMSPLAKPPPQAPPALATPPLQALPSPPASF---PGQAPFSPSASLPMSPLATP- 827
Query: 297 SSNVIAPPKFP--RAAPL 312
PP+ P AAPL
Sbjct: 828 ------PPQAPPVLAAPL 839
Score = 56.2 bits (134), Expect = 1e-07
Identities = 73/296 (24%), Positives = 114/296 (38%), Gaps = 30/296 (10%)
Query: 8 DKSKTQPQPQQQQRQQQQPQPESSVSEAPSTPLSSETPKPEENSAVPALSPAAAPPAPNG 67
+ S T+P P ++R P + S LSS SA P SPA + P+ G
Sbjct: 214 EHSTTEPSPAARRR----PSAGGGLQRPASRSLSS--------SATPLSSPARSGPSARG 261
Query: 68 PDKMQME--SPLLPGLSFHQPPQQPPPPQEPAAPGASLSPSFGSTWS-TGTTNAVEDSFF 124
+ P GL +PPQ PP ++ A LS S +T S +GT
Sbjct: 262 TPRAPAHPSQPKPKGLQALRPPQVTPPRKDAAPALGPLSSSPLATPSPSGTKARPVPPPD 321
Query: 125 QGITPVNGTMLFQNFPHHVNPVFGGTFSPQIGLAQTQHHQQPPPPAPAPQPAQPAQ--PP 182
TP+ T+ P P+ +P A P PPA P A P+ PP
Sbjct: 322 NAATPLPATL--PPSPPLATPL---PLAPPSPSAPPSLQTLPSPPATPPSQAPPSMTTPP 376
Query: 183 QAQPPQQRRSPASPSQAPYAQRSAAAAYGHQPIMTSKPSSSSAVAAAAAAAAASSASSSW 242
PP + P P Q P++ S + P+ S +++++ + A S + S
Sbjct: 377 MQAPPSLQTIP--PIQVPHSLTSPSLQAPPSPLALSSLQATTSLGSPTLQATHSFLTMS- 433
Query: 243 NTHQSVNAAWSAPSNPWGGLQAGRDPRRAVGVGVGVGVGVPSPLNP-ISPLKKPFS 297
+ A+ ++PS P P + + + + L+P +SPL P +
Sbjct: 434 --PRQTQASLTSPSRP--ASTPPDSPPLQAPLSLPASPPLQTSLSPAVSPLSSPLT 485
Score = 51.2 bits (121), Expect = 3e-06
Identities = 59/246 (23%), Positives = 81/246 (32%), Gaps = 21/246 (8%)
Query: 28 PESSVSEAPSTPLSSETPKPEENSAVPALSPAAAPPAPNGPDKMQMESPLLPGLSFHQPP 87
P S + P +P ++ P+ A P L +PPA P +P L P
Sbjct: 707 PPSPPASPPMSPSATPPPQAPPPLAAPPLQVPPSPPASPPMSPSATPPPRVPPLLAAPPL 766
Query: 88 QQPPPPQE--PAAPGASLSPSFGSTWSTGTTNAVED--SFFQGITPVNGTMLFQNFPHHV 143
Q PP P P +P A P +T A+ + F G P + + P
Sbjct: 767 QVPPSPPASLPMSPLAKPPPQAPPALATPPLQALPSPPASFPGQAPFSPSASLPMSPLAT 826
Query: 144 NPVFGGTFSPQIGLAQTQHHQQPPPPAPAPQPAQPAQPPQAQPPQQRRS----------- 192
P +P + A Q PP P +P P +PP P
Sbjct: 827 PP----PQAPPVLAAPLL--QVPPSPPASPTLQAPRRPPTPGPDTSVSGPRLTLALAPGP 880
Query: 193 PASPSQAPYAQRSAAAAYGHQPIMTSKPSSSSAVAAAAAAAAASSASSSWNTHQSVNAAW 252
P PS++P + S GH TS P + AA+S AAW
Sbjct: 881 PPPPSRSPSSTLSGPDLAGHSSSATSTPEELRGYDSGPEGGAAASPPPDAELAACHPAAW 940
Query: 253 SAPSNP 258
S P
Sbjct: 941 SRGPAP 946
Score = 50.1 bits (118), Expect = 7e-06
Identities = 83/333 (24%), Positives = 114/333 (34%), Gaps = 80/333 (24%)
Query: 16 PQQQQRQQQQP-QPESSVSEAP--STPLSSETPKPEENSAVPALSPAAAPPAPN---GPD 69
P+Q Q P +P S+ ++P PLS P + S PA+SP ++P +
Sbjct: 434 PRQTQASLTSPSRPASTPPDSPPLQAPLSLPASPPLQTSLSPAVSPLSSPLTIHPLQALS 493
Query: 70 KMQMESPLLPGLSFHQPPQQPPPPQEPAAPGASLSPSFGSTWSTGTTNAVEDSFFQGITP 129
+ SP P S PP + Q AP + +P T
Sbjct: 494 SLASHSPQAPLSSLIMPPLET---QSSLAPPSLQTPPASLT------------------- 531
Query: 130 VNGTMLFQNFPHHVNPVFGGTFSPQIGLAQTQHHQQPPPPAPAPQPAQPA---------- 179
T +N P P +P T H + PP PAP P A P+
Sbjct: 532 ---TPPLENLPSLAPPPLQTASAP----LTTPHLETPPCPAPCPLQAPPSPLTTPPPETP 584
Query: 180 -----QPPQAQP----------PQQRRSPAS--PSQAP--------YAQRSAAAAYGHQP 214
PPQA P P SP + P QAP A S A+ P
Sbjct: 585 SSIATPPPQAPPALASPPLQGLPSPPLSPLATPPPQAPPXLALPPLQAPPSPPASPPLSP 644
Query: 215 IMTSKPSSSSAVAAAAAAAAASSASSSWNTHQSVNAAWSAPSNPWGGLQAGRDPRRAVGV 274
+ T P + +A+A A S S V A +S P++P A P +A
Sbjct: 645 LATPSPQAPNALAVHLLQAPFSPPPS-----PPVQAPFSPPASPPVSPSA-TPPSQAPPS 698
Query: 275 GVGVGVGVPSPLNPISPLKKPFSSNVIAPPKFP 307
+ VP P P P S + PP+ P
Sbjct: 699 LAAPPLQVP----PSPPASPPMSPSATPPPQAP 727
Score = 40.8 bits (94), Expect = 0.004
Identities = 65/262 (24%), Positives = 100/262 (38%), Gaps = 30/262 (11%)
Query: 51 SAVPALSPAAAPPAPNGPDKMQMES-PLLPGLSFHQPPQQPPPPQEPAAPG-ASLSPSFG 108
+ +P +P A P G S P G PP + P ++PG AS + G
Sbjct: 68 ATIPESAPRAGPTRSAGTSSRNPASRPPASGRGERAPPAKNTSPGPVSSPGRASGTTRPG 127
Query: 109 STWSTGTTNAVEDSFFQG--ITPVNGTMLFQNFPHHVNPVFGGTFSPQIGLAQTQHHQQP 166
G + E++ +G + L + GT SP + +
Sbjct: 128 PLGQKGLRISAEETVARGKATEAPKRSALSAGARRDTSGPTPGTPSPAMARRSRAAGTEV 187
Query: 167 --PPPAPAPQPAQPAQ-PPQAQPPQQRRSPASPSQAPYAQRSAAAAYGHQPIMTSKPSSS 223
P PAP+ +P P + P ++ S PS P A+R +A G Q +P+S
Sbjct: 188 GLPRPAPSARPRPPTEGPRKSVSSASEHSTTEPS--PAARRRPSAGGGLQ-----RPASR 240
Query: 224 SAVAAAAAAAAASSASSSWNTHQSVNAAWSAPSNPW-GGLQAGRDPRRAVGVGVGVGVGV 282
S +++A SS + S + + A + PS P GLQA R P+ V
Sbjct: 241 S---LSSSATPLSSPARSGPSARGTPRAPAHPSQPKPKGLQALRPPQ------------V 285
Query: 283 PSPLNPISPLKKPFSSNVIAPP 304
P +P P SS+ +A P
Sbjct: 286 TPPRKDAAPALGPLSSSPLATP 307
Score = 40.0 bits (92), Expect = 0.007
Identities = 57/229 (24%), Positives = 77/229 (33%), Gaps = 41/229 (17%)
Query: 28 PESSVSEAPSTPLSSETPKPEENSAVPALSPAAAPPAPNGPDKMQMESPLLPG------- 80
P S + P +PL++ P+ A P L +PPA P P PG
Sbjct: 812 PFSPSASLPMSPLATPPPQAPPVLAAPLLQVPPSPPA--SPTLQAPRRPPTPGPDTSVSG 869
Query: 81 --LSFHQPPQQPPPPQEPAAPGASLSPSFGSTWSTGTTNAVEDSFFQGITPVNGTMLFQN 138
L+ P PPPP +P ++LS + S+ T+ E+ + G
Sbjct: 870 PRLTLALAPGPPPPPSR--SPSSTLSGPDLAGHSSSATSTPEE--------LRG------ 913
Query: 139 FPHHVNPVFGGTFSPQIGLAQTQHHQQPPPPAPAPQPAQPAQPPQAQPPQQRRSPASP-- 196
+ P G SP H PAP A P P P S
Sbjct: 914 --YDSGPEGGAAASPPPDAELAACHPAAWSRGPAPPLAFRGAPGAPLPWPPATGPGSADG 971
Query: 197 ------SQAPYAQRSAAAAYGHQPIMTSKPSSSSAVAAAAAAAAASSAS 239
++ P + A A P P +S AAA A A ASS S
Sbjct: 972 LCTIYETEGPESATPAPGALDPGP----SPGTSGGKAAAGAGAGASSRS 1016
Score = 32.3 bits (72), Expect = 1.5
Identities = 77/361 (21%), Positives = 116/361 (32%), Gaps = 43/361 (11%)
Query: 31 SVSEAPSTPLSSETPKPEENSAVPALSPAAAPPAPNGPDKMQMESPLLPGLSFHQPPQQP 90
S E + ++E PK SA + P P P G P P
Sbjct: 137 SAEETVARGKATEAPKRSALSAGARRDTSG--PTPGTPSPAMARRSRAAGTEVGLPRPAP 194
Query: 91 PPPQEPAAPGASLSPSFGSTWSTGTTNAVEDSFFQGITPVNGTMLFQNFPHHVNPVFGGT 150
P G S S S ST E S P G L + ++
Sbjct: 195 SARPRPPTEGPRKSVSSASEHST-----TEPSPAARRRPSAGGGLQRPASRSLSSSATPL 249
Query: 151 FSPQIGLAQTQHHQQPP--PPAPAPQPAQPAQPPQAQPPQQRRSPA--SPSQAPYAQRSA 206
SP + + P P P P+ Q +PPQ PP++ +PA S +P A S
Sbjct: 250 SSPARSGPSARGTPRAPAHPSQPKPKGLQALRPPQVTPPRKDAAPALGPLSSSPLATPSP 309
Query: 207 AAAYGH---QPIMTSKPSSSSAVAAAAAAAAASSASSSWNTHQSVNAAWSAPSNPWGGLQ 263
+ P + P ++ + A A S + S+ S P+ P
Sbjct: 310 SGTKARPVPPPDNAATPLPATLPPSPPLATPLPLAPPSPSAPPSLQTLPSPPATP----- 364
Query: 264 AGRDPRRAVGVGVGVGVGVPSPLNPISPLKKPF---SSNVIAPPKFPRAAPLTSKSWMED 320
P +A + P L I P++ P S ++ APP +PL S
Sbjct: 365 ----PSQAPPSMTTPPMQAPPSLQTIPPIQVPHSLTSPSLQAPP-----SPLALSSLQAT 415
Query: 321 NAFRTDNGNNLLPFQDRSRPYDTFNLHSLENSLMDMIR-----TDHEPLKGKHYPPSGPP 375
+ + P + + T + + SL R D PL+ P+ PP
Sbjct: 416 TSLGS-------PTLQATHSFLTMSPRQTQASLTSPSRPASTPPDSPPLQAPLSLPASPP 468
Query: 376 M 376
+
Sbjct: 469 L 469
>gi|91208418 transcription elongation regulator 1 isoform 2 [Homo
sapiens]
Length = 1077
Score = 64.3 bits (155), Expect = 4e-10
Identities = 70/309 (22%), Positives = 107/309 (34%), Gaps = 29/309 (9%)
Query: 25 QPQPESSVSEAPSTPLSSETPKPEENSAVPALSPAAAPPAPNGPDKMQMESPLLPGLSFH 84
+P P + P P +P + +P + P P P GP +Q + P +S
Sbjct: 48 RPPPPFGMMRGPPPPPRPPFGRPPFDPNMPPMPPPGGIPPPMGPPHLQRPPFMPPPMSSM 107
Query: 85 QPP---QQPPPPQEPAAPGASLSPSFGSTWSTGTTNAVEDSFF------QGITPVNGTML 135
PP PP APG P W T + ++ T +G +
Sbjct: 108 PPPPGMMFPPGMPPVTAPGTPALPPTEEIWVENKTPDGKVYYYNARTRESAWTKPDGVKV 167
Query: 136 FQNFPHHVNPVFGGTFSPQI-----------GLAQTQHHQQPPPPAPAPQPAQPAQPPQA 184
Q + P+ Q AQ Q Q A A AQ QA
Sbjct: 168 IQQ--SELTPMLAAQAQVQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQA 225
Query: 185 QPPQQRRSPASPSQAPYAQRSAAAAYGHQPIMTSKPSSSSAVAAAAAAAAASSASSSWNT 244
Q Q ++ A Q A Q + S P++SS A + + ++S+ SS+ +T
Sbjct: 226 QAQAQAQAQAQAQAQAQVQAQVQAQVQAQAVGASTPTTSSPAPAVSTSTSSSTPSSTTST 285
Query: 245 HQSVNAAWSAPSNPWGGLQAGRDPRRAVGVGV-GVGVGVPSP-LNPISPLKKPFSSNVIA 302
+ + S P + P AV V V V P+P P+ + +P +
Sbjct: 286 TTTATSVAQTVSTP---TTQDQTPSSAVSVATPTVSVSTPAPTATPVQTVPQPHPQTL-- 340
Query: 303 PPKFPRAAP 311
PP P + P
Sbjct: 341 PPAVPHSVP 349
Score = 51.6 bits (122), Expect = 2e-06
Identities = 60/254 (23%), Positives = 96/254 (37%), Gaps = 17/254 (6%)
Query: 5 LLMDKSKTQPQPQQQQRQQQQPQPESSVSEAPSTPLSSETPKPEENSAVPALSPAAAPPA 64
+L +++ Q Q Q Q + Q Q Q ++ ++A + + + + + A + A A
Sbjct: 176 MLAAQAQVQAQAQAQAQAQAQAQAQAQ-AQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQ 234
Query: 65 PNGPDKMQMESPLLPGLSFHQPPQQPPPPQEPAAPGASLSPSFGSTWSTGTTNAVEDSFF 124
+ Q+++ + + P PA P S S S + ST +T S
Sbjct: 235 AQAQAQAQVQAQVQAQVQAQAVGASTPTTSSPA-PAVSTSTSSSTPSSTTSTTTTATSVA 293
Query: 125 QGI-TPVNGTMLFQNFPHHVNPVFG-GTFSPQIGLAQT--QHHQQPPPPA-----PAPQP 175
Q + TP + P T +P QT Q H Q PPA P P
Sbjct: 294 QTVSTPTTQDQTPSSAVSVATPTVSVSTPAPTATPVQTVPQPHPQTLPPAVPHSVPQPTT 353
Query: 176 AQPAQPPQAQPPQQRRSPASPSQAPYAQRSAAAAYGHQPIMTSKPSSSSAVAAAAAAAAA 235
A PA PP PP + P P P G P + A+AA+ A A
Sbjct: 354 AIPAFPPVMVPPFRVPLPGMPIPLP------GVLPGMAPPIVPMIHPQVAIAASPATLAG 407
Query: 236 SSASSSWNTHQSVN 249
++A S W +++ +
Sbjct: 408 ATAVSEWTEYKTAD 421
>gi|21327715 transcription elongation regulator 1 isoform 1 [Homo
sapiens]
Length = 1098
Score = 64.3 bits (155), Expect = 4e-10
Identities = 70/309 (22%), Positives = 107/309 (34%), Gaps = 29/309 (9%)
Query: 25 QPQPESSVSEAPSTPLSSETPKPEENSAVPALSPAAAPPAPNGPDKMQMESPLLPGLSFH 84
+P P + P P +P + +P + P P P GP +Q + P +S
Sbjct: 48 RPPPPFGMMRGPPPPPRPPFGRPPFDPNMPPMPPPGGIPPPMGPPHLQRPPFMPPPMSSM 107
Query: 85 QPP---QQPPPPQEPAAPGASLSPSFGSTWSTGTTNAVEDSFF------QGITPVNGTML 135
PP PP APG P W T + ++ T +G +
Sbjct: 108 PPPPGMMFPPGMPPVTAPGTPALPPTEEIWVENKTPDGKVYYYNARTRESAWTKPDGVKV 167
Query: 136 FQNFPHHVNPVFGGTFSPQI-----------GLAQTQHHQQPPPPAPAPQPAQPAQPPQA 184
Q + P+ Q AQ Q Q A A AQ QA
Sbjct: 168 IQQ--SELTPMLAAQAQVQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQA 225
Query: 185 QPPQQRRSPASPSQAPYAQRSAAAAYGHQPIMTSKPSSSSAVAAAAAAAAASSASSSWNT 244
Q Q ++ A Q A Q + S P++SS A + + ++S+ SS+ +T
Sbjct: 226 QAQAQAQAQAQAQAQAQVQAQVQAQVQAQAVGASTPTTSSPAPAVSTSTSSSTPSSTTST 285
Query: 245 HQSVNAAWSAPSNPWGGLQAGRDPRRAVGVGV-GVGVGVPSP-LNPISPLKKPFSSNVIA 302
+ + S P + P AV V V V P+P P+ + +P +
Sbjct: 286 TTTATSVAQTVSTP---TTQDQTPSSAVSVATPTVSVSTPAPTATPVQTVPQPHPQTL-- 340
Query: 303 PPKFPRAAP 311
PP P + P
Sbjct: 341 PPAVPHSVP 349
Score = 48.9 bits (115), Expect = 2e-05
Identities = 63/269 (23%), Positives = 99/269 (36%), Gaps = 26/269 (9%)
Query: 5 LLMDKSKTQPQPQQQQRQQQQPQPESSVSEAPSTPLSSETPKPEENSAVPALSPAAAPPA 64
+L +++ Q Q Q Q + Q Q Q ++ ++A + + + + + A + A A
Sbjct: 176 MLAAQAQVQAQAQAQAQAQAQAQAQAQ-AQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQ 234
Query: 65 PNGPDKMQMESPLLPGLSFHQPPQQPPPPQEPAAPGASLSPSFGSTWSTGTTNAVEDSFF 124
+ Q+++ + + P PA P S S S + ST +T S
Sbjct: 235 AQAQAQAQVQAQVQAQVQAQAVGASTPTTSSPA-PAVSTSTSSSTPSSTTSTTTTATSVA 293
Query: 125 QGI-TPVNGTMLFQNFPHHVNPVFG-GTFSPQIGLAQT--QHHQQPPPPA-----PAPQP 175
Q + TP + P T +P QT Q H Q PPA P P
Sbjct: 294 QTVSTPTTQDQTPSSAVSVATPTVSVSTPAPTATPVQTVPQPHPQTLPPAVPHSVPQPTT 353
Query: 176 AQPAQPPQAQPPQQRRSPASP-----------SQAPYAQRSAAAAYGHQPIM----TSKP 220
A PA PP PP + P P PY + A G P M
Sbjct: 354 AIPAFPPVMVPPFRVPLPGMPIPLPGVAMMQIVSCPYVKTVATTKTGVLPGMAPPIVPMI 413
Query: 221 SSSSAVAAAAAAAAASSASSSWNTHQSVN 249
A+AA+ A A ++A S W +++ +
Sbjct: 414 HPQVAIAASPATLAGATAVSEWTEYKTAD 442
>gi|112734870 hypothetical protein LOC57648 [Homo sapiens]
Length = 1094
Score = 63.5 bits (153), Expect = 6e-10
Identities = 71/257 (27%), Positives = 99/257 (38%), Gaps = 38/257 (14%)
Query: 14 PQPQQQQRQQQQPQPESSVSEAPSTPLSSETPKPEENSAVPALSPAAAPPAPNGPDK--- 70
P+P+++Q+ Q P + SE ++ P NS VP LSP + P P++
Sbjct: 523 PKPERKQQPQLPRPPTTGGSEGAG---AAPCPPNPANSWVPGLSPGGSRRPPRSPERTLS 579
Query: 71 ------MQMESPLLPGLSFHQPP-----QQPPPPQEPA---APGASLSPSFGSTWSTGTT 116
Q +P LP PP QPP P+ +PGAS+S S S S+ +
Sbjct: 580 PSSGYSSQSGTPTLPPKGLAGPPASPGKAQPPKPERVTSLRSPGASVSSSLTSLCSSSSD 639
Query: 117 NAVED-SFFQGITPVNGTMLFQNFPHHVNPVFGGTFSPQIGLAQTQHHQQPPPPAPAPQP 175
A D S Q +TP+ + PH P FSP ++ + P APA P
Sbjct: 640 PAPSDRSGPQILTPLGDRFVIP--PH---PKVPAPFSPPPSKPRSPNPAAPALAAPAVVP 694
Query: 176 -------AQPAQPPQAQ---PPQQRRSPASPSQAPYAQRSAAAAYGHQPIMTSKPSSSSA 225
A P PP Q P Q S Q+P S +Y P T KP
Sbjct: 695 GPVSTTDASPQSPPTPQTTLTPLQESPVISKDQSP--PPSPPPSYHPPPPPTKKPEVVVE 752
Query: 226 VAAAAAAAAASSASSSW 242
+A+ A +W
Sbjct: 753 APSASETAEEPLQDPNW 769
Score = 48.1 bits (113), Expect = 3e-05
Identities = 80/360 (22%), Positives = 125/360 (34%), Gaps = 43/360 (11%)
Query: 23 QQQPQPESSVSEAPSTPLSSETPKPEENSAVPALSPAAAPPAPNGPDKMQMESPLLPGLS 82
Q P P+++++ +P+ S+ P S P+ P PP P ++ +E+P +
Sbjct: 705 QSPPTPQTTLTPLQESPVISKDQSPPP-SPPPSYHP---PPPPTKKPEVVVEAPSASETA 760
Query: 83 FHQPPQQP--PPPQEPAAPGASLSPSFGSTWSTGTTNAVEDSFFQGITPVNGTMLFQNFP 140
+P Q P PPP PA LS + E++FF +P P
Sbjct: 761 -EEPLQDPNWPPPPPPAPEEQDLSMA--------DFPPPEEAFFSVASPEPAGP--SGSP 809
Query: 141 HHVNPVFGGTFSPQIGLAQTQHHQQPPPPAPAPQPAQPAQPPQAQPPQQRRSPASPSQAP 200
V+ + S Q PPP PAP PA A A+ PQ+ S P
Sbjct: 810 ELVSSPAASSSSATALQIQPPGSPDPPPAPPAPAPASSAPGHVAKLPQKEPVGCSKGGGP 869
Query: 201 YAQRSAAAAYGHQPIMTSKPSSSSAVAAAAAAAAASSASSSWNTHQSVNAAWSAPSNPWG 260
+ A + + S A A A SA ++++ S P
Sbjct: 870 PREDVGAPLVTPSLLQMVRLRSVGAPGGAPTPALGPSAPQK-PLRRALSGRASPVPAPSS 928
Query: 261 GLQAGRDPRRAVGVGVGVGVGVPSPLNPISPLKKPFSSNVIAPPKFPRAAPLTSKSWMED 320
GL A +A + G+ P P P A P +S
Sbjct: 929 GLHAA-VRLKACSLAASEGLSSAQPNGP------------------PEAEPRPPQSPAST 969
Query: 321 NAFRTDNGNNLLPFQDRSRPYDTFNLHSLENSLMDMIRTDHE---PLKGKHYPPSGPPMS 377
+F G+ L + RP L+ +L+ +R+ E P K P + PP++
Sbjct: 970 ASFIFSKGSRKLQLE---RPVSPETQADLQRNLVAELRSISEQRPPQAPKKSPKAPPPVA 1026
Score = 42.4 bits (98), Expect = 0.001
Identities = 81/329 (24%), Positives = 111/329 (33%), Gaps = 68/329 (20%)
Query: 10 SKTQPQPQQQQRQQQQPQP---ESSVSEAPSTP-----LSSETPKPEENSAVPAL--SPA 59
S+T +P Q P P E +S A P S +P+P S P L SPA
Sbjct: 757 SETAEEPLQDPNWPPPPPPAPEEQDLSMADFPPPEEAFFSVASPEPAGPSGSPELVSSPA 816
Query: 60 AAPPAPNGPDKMQMESPLLPGLSFHQPPQQPPPPQEPAAPG--ASLSPSFGSTWSTGTTN 117
A+ + +Q++ P P PP P P +APG A L S G
Sbjct: 817 ASSSSATA---LQIQPPGSPD----PPPAPPAPAPASSAPGHVAKLPQKEPVGCSKGGGP 869
Query: 118 AVEDSFFQGITPVNGTML---FQNFPHHVNPVFGGTFSPQIGLAQTQHHQQPPPPAPAP- 173
ED +TP M+ P G +PQ L + + P PAP+
Sbjct: 870 PREDVGAPLVTPSLLQMVRLRSVGAPGGAPTPALGPSAPQKPLRRALSGRASPVPAPSSG 929
Query: 174 ------------------QPAQPAQPPQAQPPQQRRSPASPSQAPYAQRSAAAAYGHQPI 215
AQP PP+A+P P Q+P + S + G + +
Sbjct: 930 LHAAVRLKACSLAASEGLSSAQPNGPPEAEP--------RPPQSPASTASFIFSKGSRKL 981
Query: 216 MTSKPSSSSAVAAAAAAAAASSASSSWNTHQSVNAAWSAPSNPWGGLQAGRDPRRAVGVG 275
+P S A A S S P P + P+ V
Sbjct: 982 QLERPVSPETQADLQRNLVAELRSISEQR---------PPQAP------KKSPKAPPPVA 1026
Query: 276 VGVGVGVPSPLNPISPLKKPFSSNVIAPP 304
VGVP P +P P +P + APP
Sbjct: 1027 RKPSVGVPPPASPSYPRAEPLT----APP 1051
>gi|4826998 splicing factor proline/glutamine rich (polypyrimidine
tract binding protein associated) [Homo sapiens]
Length = 707
Score = 60.5 bits (145), Expect = 5e-09
Identities = 94/358 (26%), Positives = 118/358 (32%), Gaps = 94/358 (26%)
Query: 161 QHHQQPPPPAPAPQPAQPAQPPQAQPPQQRRSPASP---SQAPYAQRSAAAAYGHQPIMT 217
Q QQPPP P PQ P QPP P Q++ P P S P + A G + +
Sbjct: 67 QQQQQPPPQQPPPQQPPPHQPPPHPQPHQQQQPPPPPQDSSKPVVAQGPGPAPG---VGS 123
Query: 218 SKPSSSSAVAAAAAAAAASSASSSWNTHQSVNAAWSA------PSNPWGGL-----QAGR 266
+ P+SSSA A + A S T A SA P+ P G+ QAG
Sbjct: 124 APPASSSAPPATPPTSGAPPGSGPGPTPTPPPAVTSAPPGAPPPTPPSSGVPTTPPQAGG 183
Query: 267 DPRRAVGVGVGVGVGVPSPLNPISPLKKPFSSNVIAPPKFPRAAPLTSKSWMEDNAFRTD 326
P V G G G P P + PK P P T
Sbjct: 184 PPPPPAAV-PGPGPGPKQGPGPGGPK----GGKMPGGPK-PGGGP----------GLSTP 227
Query: 327 NGNNLLPFQDRSRPYDTFNLHSLENSLMDMIRTDHEPLKGKHY---PPSGPPMSFADIMW 383
G+ P + P R H P +H+ PP GP
Sbjct: 228 GGHPKPPHRGGGEPRGG--------------RQHHPPYHQQHHQGPPPGGP--------- 264
Query: 384 RNHFAGRMGINFHHPGTDNIMALNNAFLDDSHGDQALSSGLSSPTRCQNGERVERYSRKV 443
GR + + DS G +A S L P GE+ ++
Sbjct: 265 ----GGR----------------SEEKISDSEGFKANLSLLRRP-----GEKTYTQRCRL 299
Query: 444 FVGGLPPDIDEDEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQEESSVQALI 501
FVG LP DI EDE F ++G E F KG F + ES A I
Sbjct: 300 FVGNLPADITEDEFKRLFAKYG----------EPGEVFINKGKGFGFIKLESRALAEI 347
Score = 57.8 bits (138), Expect = 3e-08
Identities = 52/177 (29%), Positives = 62/177 (35%), Gaps = 20/177 (11%)
Query: 14 PQPQQQQRQQQQPQPESS----VSEAPSTPLSSETPKPEENSAVPALSPAAAPPAPNGPD 69
P PQ Q+QQ P P+ S V++ P + P +SA PA P + P +GP
Sbjct: 89 PHPQPHQQQQPPPPPQDSSKPVVAQGPGPAPGVGSAPPASSSAPPATPPTSGAPPGSGPG 148
Query: 70 KMQMESPLLPGLSFHQPPQQPP-------PPQ---EPAAPGASLSPSFGSTWSTGTTNAV 119
P + PP PP PPQ P P A P G G
Sbjct: 149 PTPTPPPAVTSAPPGAPPPTPPSSGVPTTPPQAGGPPPPPAAVPGPGPGPKQGPGPGGPK 208
Query: 120 EDSFFQGITPVNGTMLFQNFPHHVNPVFGGTFSPQIGLA-----QTQHHQQPPPPAP 171
G P G L H P GG P+ G QHHQ PPP P
Sbjct: 209 GGKMPGGPKPGGGPGLSTPGGHPKPPHRGGG-EPRGGRQHHPPYHQQHHQGPPPGGP 264
Score = 49.7 bits (117), Expect = 9e-06
Identities = 47/193 (24%), Positives = 60/193 (31%), Gaps = 20/193 (10%)
Query: 14 PQPQQQQRQQQQPQPESSVSEAPSTPLSSETPKPEENSAVPALSPAAAPPAPNGPDKMQM 73
P P Q + P P P+ P ++ P P PP P Q
Sbjct: 34 PPPGMGLNQNRGPMGPGPGQSGPKPPIPPPPPHQQQQQPPPQQPPPQQPPPHQPPPHPQP 93
Query: 74 ESPLLPGLSFHQPPQQPPPPQEPAAP----GASLSPSFGSTWSTGTTNAVEDSFFQGITP 129
HQ Q PPPPQ+ + P G +P GS ++ G P
Sbjct: 94 ----------HQQQQPPPPPQDSSKPVVAQGPGPAPGVGSAPPASSSAPPATPPTSGAPP 143
Query: 130 VNGTMLFQNFPHHVNPVFGGT---FSPQIGLAQTQHHQQPPPPAPAPQPAQ---PAQPPQ 183
+G P V G P G+ T PPP PA P P Q P
Sbjct: 144 GSGPGPTPTPPPAVTSAPPGAPPPTPPSSGVPTTPPQAGGPPPPPAAVPGPGPGPKQGPG 203
Query: 184 AQPPQQRRSPASP 196
P+ + P P
Sbjct: 204 PGGPKGGKMPGGP 216
Score = 40.0 bits (92), Expect = 0.007
Identities = 43/157 (27%), Positives = 50/157 (31%), Gaps = 22/157 (14%)
Query: 62 PPAPNGPDKMQMESPLLPGLSFHQPPQQPPPPQEPA--APGASLSPSFGSTWSTGTTNAV 119
PP P P Q + QPP Q PPPQ+P P P ++
Sbjct: 58 PPIPPPPPHQQQQ----------QPPPQQPPPQQPPPHQPPPHPQPHQQQQPPPPPQDSS 107
Query: 120 EDSFFQGITPVNGTMLFQNFPHHVNPVFGGTFSPQIGLAQTQHHQQPPPPAPAPQPAQPA 179
+ QG P G P T G P P P P PA +
Sbjct: 108 KPVVAQGPGPAPGVGSAPPASSSAPPATPPTSGAPPG--------SGPGPTPTPPPAVTS 159
Query: 180 QPPQAQPPQQRRS--PASPSQAPYAQRSAAAAYGHQP 214
PP A PP S P +P QA AA G P
Sbjct: 160 APPGAPPPTPPSSGVPTTPPQAGGPPPPPAAVPGPGP 196
>gi|150417989 cyclin K isoform 1 [Homo sapiens]
Length = 580
Score = 60.5 bits (145), Expect = 5e-09
Identities = 50/190 (26%), Positives = 72/190 (37%), Gaps = 13/190 (6%)
Query: 16 PQQQQRQQQQPQPESSVSEAPSTPLSSETPKPEENSAVPALSPAAAPPAP---NGPDKMQ 72
P+++ + + P P+ E PL P P+ + A A PP P K+Q
Sbjct: 341 PKEENKAAEPPPPKIPKIETTHPPLPPAHPPPDRKPPLAAALGEAEPPGPVDATDLPKVQ 400
Query: 73 MESPLLPGLSFHQPPQQP--PPPQEPAAPGASLSPSFGSTWSTGTTNAVEDSFFQGITPV 130
+ P P HQPP P PPP P++ +S + S++ +G S + P
Sbjct: 401 IPPPAHPA-PVHQPPPLPHRPPPPPPSSYMTGMSTT--SSYMSGEGYQSLQSMMKTEGPS 457
Query: 131 NGTMLFQNFPHHVNPVFGGTFSPQIGLAQTQHHQQPPPPAPAPQPAQPAQPPQAQPPQQR 190
G + P P + P + PPPPA P PA P P PP
Sbjct: 458 YGAL-----PPAYGPPAHLPYHPHVYPPNPPPPPVPPPPASFPPPAIPPPTPGYPPPPPT 512
Query: 191 RSPASPSQAP 200
+P P P
Sbjct: 513 YNPNFPPPPP 522
Score = 53.5 bits (127), Expect = 6e-07
Identities = 58/232 (25%), Positives = 79/232 (34%), Gaps = 51/232 (21%)
Query: 10 SKTQPQPQQQQRQQQQPQPESSVSEAPSTPLSSETPKPEENSAVPALSP-----AAAPPA 64
S++ Q QQ+ QQP + ++ P P S + P + +SP AA PP
Sbjct: 294 SQSSEPSQPQQKDPQQPAQQQQPAQQPKKP-SPQPSSPRQVKRAVVVSPKEENKAAEPPP 352
Query: 65 PNGPDKMQMESPLLPGLSFHQPPQQPPP------PQEPAAPGASLS-------------- 104
P P K++ P LP H PP + PP EP P +
Sbjct: 353 PKIP-KIETTHPPLP--PAHPPPDRKPPLAAALGEAEPPGPVDATDLPKVQIPPPAHPAP 409
Query: 105 ------------PSFGSTWSTGTTNAVEDSFFQGITPVNGTMLFQNFPHHVNPVFGG--- 149
P S++ TG + S+ G G Q+ P +G
Sbjct: 410 VHQPPPLPHRPPPPPPSSYMTGMSTT--SSYMSG----EGYQSLQSMMKTEGPSYGALPP 463
Query: 150 TFSPQIGLAQTQHHQQP-PPPAPAPQPAQPAQPPQAQPPQQRRSPASPSQAP 200
+ P L H P PPP P P P PP PP P P+ P
Sbjct: 464 AYGPPAHLPYHPHVYPPNPPPPPVPPPPASFPPPAIPPPTPGYPPPPPTYNP 515
Score = 35.8 bits (81), Expect = 0.14
Identities = 58/261 (22%), Positives = 81/261 (31%), Gaps = 31/261 (11%)
Query: 47 PEENSAVPALSPAAAPPAPNGPDKMQMESPLLPGLSFHQPPQQPPPPQEPAAPGASLSPS 106
P + P+L P P Q P P + PQQP Q+PA SP
Sbjct: 270 PHQLQQPPSLQPTPQVPQVQQSQPSQSSEPSQPQ---QKDPQQPAQQQQPAQQPKKPSPQ 326
Query: 107 FGSTWSTGTTNAVEDSFFQGITPVNGTMLFQNFPHHVNPVFGGTFSPQIGLAQTQHHQQP 166
S V +P + P P+I +T H P
Sbjct: 327 PSSPRQVKRAVVV--------SPKEENKAAEPPP------------PKIPKIETTHPPLP 366
Query: 167 PP-PAPAPQPAQPAQPPQAQPPQQRRSPASPSQAPYAQ--RSAAAAYGHQPIMTSKPSSS 223
P P P +P A +A+PP P + P Q A A HQP
Sbjct: 367 PAHPPPDRKPPLAAALGEAEPP----GPVDATDLPKVQIPPPAHPAPVHQPPPLPHRPPP 422
Query: 224 SAVAAAAAAAAASSASSSWNTHQSVNAAWSAPSNPWGGLQAGRDPRRAVGVGVGVGVGVP 283
++ + +S+ S +QS+ + +G L P + V P
Sbjct: 423 PPPSSYMTGMSTTSSYMSGEGYQSLQSMMKTEGPSYGALPPAYGPPAHLPYHPHVYPPNP 482
Query: 284 SPLNPISPLKKPFSSNVIAPP 304
P P+ P F I PP
Sbjct: 483 PP-PPVPPPPASFPPPAIPPP 502
Score = 33.9 bits (76), Expect = 0.52
Identities = 46/183 (25%), Positives = 64/183 (34%), Gaps = 34/183 (18%)
Query: 156 GLAQTQHH-----QQPP-----PPAPAPQPAQ------PAQPPQAQP--PQQRRSPASPS 197
G Q HH QQPP P P Q +Q P+QP Q P P Q++ PA
Sbjct: 261 GKQQMPHHTPHQLQQPPSLQPTPQVPQVQQSQPSQSSEPSQPQQKDPQQPAQQQQPAQQP 320
Query: 198 QAPYAQRSAAAAYGHQPIMTSKPSSSSAVAAAAAAAAASSASSSWNTHQSVNAAWSAPSN 257
+ P Q S+ +++ K + AA TH + A P
Sbjct: 321 KKPSPQPSSPRQVKRAVVVSPKEENK------AAEPPPPKIPKIETTHPPLPPAHPPPDR 374
Query: 258 --PWGGLQAGRDPRRAVGVGVGVGVGVPSPLNPISPLKKPFSSNVIAPPKFPRAAPLTSK 315
P +P V V +P P +P +P+ +P PP R P
Sbjct: 375 KPPLAAALGEAEPPGPVDATDLPKVQIPPPAHP-APVHQP-------PPLPHRPPPPPPS 426
Query: 316 SWM 318
S+M
Sbjct: 427 SYM 429
Score = 31.6 bits (70), Expect = 2.6
Identities = 25/90 (27%), Positives = 30/90 (33%), Gaps = 7/90 (7%)
Query: 26 PQPESSVSEAPSTPLSSETPKPEENSAVPALSPAAAPPAPNGPDKMQMESPLLPGLSF-- 83
P P A P + P P P +P PP P P + PGL
Sbjct: 483 PPPPVPPPPASFPPPAIPPPTPGYPPPPPTYNPNFPPPPPRLPPTHAVPPHPPPGLGLPP 542
Query: 84 --HQPPQQPP---PPQEPAAPGASLSPSFG 108
+ PP PP PP P P + P G
Sbjct: 543 ASYPPPAVPPGGQPPVPPPIPPPGMPPVGG 572
>gi|149773456 hypothetical protein LOC643314 [Homo sapiens]
Length = 1427
Score = 59.7 bits (143), Expect = 9e-09
Identities = 79/291 (27%), Positives = 110/291 (37%), Gaps = 51/291 (17%)
Query: 31 SVSEAPSTPLSSETPKPEENSAVPALSPAAAPPAPNGPDKMQMESPLLPGLSFHQPPQQP 90
S E P++P ++ P PEE + SPAAA P P P P PP++P
Sbjct: 995 STPEEPASPAAA-VPTPEEPT-----SPAAAVPTPEEPTSPAAAVP---------PPEEP 1039
Query: 91 -------PPPQEPAAPGASLSPSFGSTWSTGTTNAVEDSFFQGI---TPVNGTMLFQNFP 140
P P+EP +P A++ T E+ TP T P
Sbjct: 1040 TSPAAAVPTPEEPTSPAAAVPTPEEPTSPAAAVPTPEEPTSPAAAVPTPEEPTSPAAAVP 1099
Query: 141 HHVNPVFGGTFSPQIGLAQTQHHQQPPPPAPA-PQPAQPAQPPQAQP-PQQRRSPASPSQ 198
P SP A ++P PA A P P +PA P A P P++ PA
Sbjct: 1100 TPEEPT-----SPA---AAVPTPEEPASPAAAVPTPEEPASPAAAVPTPEEPAFPAPAVP 1151
Query: 199 APYAQRSAAAAYGHQPIMTSKPSSSSAVAAAAAAAAASSASSSWNTHQSVNAAWSAPSNP 258
P SAA A + T + S+S A A A +AS A+ + + A S P+
Sbjct: 1152 TPEESASAAVA-----VPTPEESASPAAAVPTPAESASFAAVVATLEEPTSPAASVPTPA 1206
Query: 259 --WGGLQAGRDPRRAVGVG---VGVGVGVPSPLNPISP------LKKPFSS 298
L+ P +V + V +P P SP L++P SS
Sbjct: 1207 AMVATLEEFTSPAASVPTSEEPASLAAAVSNPEEPTSPAAAVPTLEEPTSS 1257
Score = 53.1 bits (126), Expect = 8e-07
Identities = 69/285 (24%), Positives = 98/285 (34%), Gaps = 32/285 (11%)
Query: 26 PQPESSVSEAPSTPLSSETPKPEENSAVPA----LSPAAAPPAPNGPDKMQMESPLLPGL 81
P PE S A + P E P +AVP SPAAA P P E P P
Sbjct: 1073 PTPEEPTSPAAAVPTPEEPTSPA--AAVPTPEEPTSPAAAVPTP--------EEPASPAA 1122
Query: 82 SFHQP--PQQP----PPPQEPAAPGASLSPSFGSTWSTGTTNAVEDSFFQGI---TPVNG 132
+ P P P P P+EPA P ++ S + E+S TP
Sbjct: 1123 AVPTPEEPASPAAAVPTPEEPAFPAPAVPTPEESASAAVAVPTPEESASPAAAVPTPAES 1182
Query: 133 TMLFQNFPHHVNPVFGGTFSPQIGLAQTQHHQQPPPPAPAPQPAQPAQPPQA-QPPQQRR 191
P P + P A P +PA A P++
Sbjct: 1183 ASFAAVVATLEEPTSPAASVPTPAAMVATLEEFTSPAASVPTSEEPASLAAAVSNPEEPT 1242
Query: 192 SPASPSQAPYAQRSAAAAYGHQPIMTSKPSSSSAVAAAAAAAAASSASSSWNTHQSVNAA 251
SPA+ S+AAA ++T + SS A + AS A++ N + + A
Sbjct: 1243 SPAAAVPTLEEPTSSAAA-----VLTPEELSSPAASVPTPEEPASPAAAVSNLEEPASPA 1297
Query: 252 WSAPSNPWGGLQAGRDPRRAVGVGVGVGVGVPSPLNPISPLKKPF 296
+ P+ + A P V + P+ +SP+ PF
Sbjct: 1298 AAVPTPEVAAIPAASVPTPEV---PAIPAAAVPPMEEVSPIGVPF 1339
>gi|21312134 mediator complex subunit 15 isoform b [Homo sapiens]
Length = 748
Score = 59.3 bits (142), Expect = 1e-08
Identities = 63/243 (25%), Positives = 89/243 (36%), Gaps = 25/243 (10%)
Query: 15 QPQQQQRQQQQPQPESSVSEAPSTPLSSETPKPEENSAVPALSPAAAPPAPNGPDKMQME 74
Q QQQQ+QQQQ Q ++ ++ P + P+P + A+P + P +
Sbjct: 248 QQQQQQQQQQQQQQQALQAQPPIQQPPMQQPQPPPSQALPQQLQQMHHTQHHQPPPQPQQ 307
Query: 75 SPLLPGLSFHQPPQ---QPPPPQEPAAPGASLSPS----FGSTWSTGTTNAVEDSFFQGI 127
P+ PPQ QP Q A PG L F V+ Q
Sbjct: 308 PPVAQNQPSQLPPQSQTQPLVSQAQALPGQMLYTQPPLKFVRAPMVVQQPPVQPQVQQQQ 367
Query: 128 TPVNGTMLFQNFPHHVN------PVFGGTFSPQIGLAQTQHHQQPPPPAPAPQPAQPAQP 181
T V Q V P+ SP G PPPP P+PQP QP+
Sbjct: 368 TAVQTAQAAQMVAPGVQVSQSSLPMLS---SPSPGQQVQTPQSMPPPPQPSPQPGQPSSQ 424
Query: 182 PQA--------QPPQQRRSPA-SPSQAPYAQRSAAAAYGHQPIMTSKPSSSSAVAAAAAA 232
P + P SP+ PSQ+P R+ P + P + S+V + A +
Sbjct: 425 PNSNVSSGPAPSPSSFLPSPSPQPSQSPVTARTPQNFSVPSPGPLNTPVNPSSVMSPAGS 484
Query: 233 AAA 235
+ A
Sbjct: 485 SQA 487
Score = 35.4 bits (80), Expect = 0.18
Identities = 37/136 (27%), Positives = 49/136 (36%), Gaps = 22/136 (16%)
Query: 5 LLMDKSKTQPQPQQQQRQQQQPQ------PESSVSEAPSTPLSSETPKPEENSAVPALSP 58
+++ + QPQ QQQQ Q Q P VS++ LSS +P + + P
Sbjct: 352 MVVQQPPVQPQVQQQQTAVQTAQAAQMVAPGVQVSQSSLPMLSSPSPGQQVQTPQSMPPP 411
Query: 59 AAAPPAPNGPDKM---QMESPLLPGLSFHQPPQQPPPPQEPAAPGASLSPSFGSTWSTGT 115
P P P + S P S P P P Q P + +P S S G
Sbjct: 412 PQPSPQPGQPSSQPNSNVSSGPAPSPSSFLPSPSPQPSQSPV---TARTPQNFSVPSPGP 468
Query: 116 TNAVEDSFFQGITPVN 131
N TPVN
Sbjct: 469 LN----------TPVN 474
>gi|163965366 nascent polypeptide-associated complex alpha subunit
isoform a [Homo sapiens]
Length = 2078
Score = 59.3 bits (142), Expect = 1e-08
Identities = 76/318 (23%), Positives = 108/318 (33%), Gaps = 26/318 (8%)
Query: 11 KTQPQPQQQQRQQQQPQPESSVSEAPSTPLSSETPKPEENSAVPA-----LSPAAAPPAP 65
K P P + P + + TP ++ P P+ A P+ PAA PP+P
Sbjct: 937 KGAPTPPAATPPSPKGGPATPSPKWAPTPPAATPPSPKGGPATPSPKGAPTPPAATPPSP 996
Query: 66 NGPDKMQMESPLLPGLSFHQPPQQPPPPQEPAAPGASLSPSFGSTWSTGTTNAVEDSFFQ 125
G P P P PP +P A+ P ST T + + S
Sbjct: 997 KG-------GPATPSPKGAPTPPAVTPPSPKGSPAATPFPKGASTPPAATPPSPKGS--P 1047
Query: 126 GITPVNGTMLFQNFPHHVNPVFGGTFSPQIGLAQTQHHQQPPPP--APA-PQPAQPAQPP 182
TP+ +P GG +P + A T PP P PA P P PP
Sbjct: 1048 AATPLPKGAPTTPAATLPSPK-GGPATPSLKGAPTPPAATPPSPKGGPATPSPKGAPMPP 1106
Query: 183 QAQPPQQRRSPASPSQAPYAQRSAAAAYGHQPIMTSKPSSSSAVAAAAAAAAASSASSSW 242
A PP + A+P AA + + + P + AA + ++
Sbjct: 1107 AATPPSPKGGLATPPHKGAPTTPAATPPSPKGGLATPPPKGAPTTPAATPPSPKGGLATP 1166
Query: 243 NTHQSVNAAWSAPSNPWGGLQAGRDPRRAVGVGVGV------GVGVPSPLN-PISPLKKP 295
+ + P +P GGL A P+ A G+ PSP P +P P
Sbjct: 1167 PPKGAPTTPAATPPSPKGGL-ATPSPKGAPTTPAATPPSPKGGLATPSPKGAPTTPAATP 1225
Query: 296 FSSNVIAPPKFPRAAPLT 313
S P+ AP T
Sbjct: 1226 PSPKGGLATPSPKGAPTT 1243
Score = 57.4 bits (137), Expect = 4e-08
Identities = 82/325 (25%), Positives = 115/325 (35%), Gaps = 46/325 (14%)
Query: 23 QQQPQPESSVSEAPSTPLS--SETPKPEENSAVP-------------ALSPAAAPPAPNG 67
Q + P S P TP+ S P E S +P A + + PP+P G
Sbjct: 804 QTKRPPTKKGSAGPDTPIGNLSSPVSPVEASFLPENSLSFQGSKDSPATTHSPTPPSPKG 863
Query: 68 PDKMQMESPLLP-GLSFHQPPQQPP---------PPQEPAAPGASLSPSFGSTWSTGTTN 117
+PL P G++ PP++ P P + PA P +P+ T S+
Sbjct: 864 APTPSAVTPLSPKGVTL--PPKETPTPSVVNLPFPKEGPATPAPKQAPALSMT-SSSPKK 920
Query: 118 AVEDSFFQGITPVNGTMLFQNFPHHVNPVF--GGTFSPQIGLAQTQHHQQPPPP--APA- 172
A +GI P + + P P GG +P A T PP P PA
Sbjct: 921 ARATPAPKGI-PASPSPKGAPTPPAATPPSPKGGPATPSPKWAPTPPAATPPSPKGGPAT 979
Query: 173 PQPAQPAQPPQAQPPQQRRSPASPSQ--APYAQRSAAAAYGHQPIMTSKPSSSSAVAAAA 230
P P PP A PP + PA+PS AP + P T P +S AA
Sbjct: 980 PSPKGAPTPPAATPPSPKGGPATPSPKGAPTPPAVTPPSPKGSPAATPFPKGASTPPAAT 1039
Query: 231 AAAAASSASSSWNTHQSVNAAWSAPSNPWGGLQAGRDPRRAVGVGVGVGVGVPSPLNPIS 290
+ S +++ AP+ P L + P+ G P P S
Sbjct: 1040 PPSPKGSPAAT-------PLPKGAPTTPAATLPS---PKGGPATPSLKGAPTPPAATPPS 1089
Query: 291 PLKKPFSSNVIAPPKFPRAAPLTSK 315
P P + + P P A P + K
Sbjct: 1090 PKGGPATPSPKGAPMPPAATPPSPK 1114
Score = 51.6 bits (122), Expect = 2e-06
Identities = 83/310 (26%), Positives = 110/310 (35%), Gaps = 41/310 (13%)
Query: 26 PQPESSVSEAPSTPLSSETPKPEENSAVPALSPAAAPPAPNGPDKMQMESPLLPGLSFHQ 85
P P+++ + + L+ E PK + P+L PA PP D + S L P S
Sbjct: 712 PSPQNTCAPLATLVLAPEIPKSVPS---PSLPPAGTPPGTKKVDGISHTSALAPVAS--- 765
Query: 86 PPQQPPPPQEPAAPGASL---------SPS-FGSTWSTGTTNAVEDSFFQG-ITPVNGTM 134
P++ P A+ AS SPS G + S T G TP+
Sbjct: 766 SPKECPTEDSGASATASSKGTLTYLADSPSPLGVSVSPQTKRPPTKKGSAGPDTPIG--- 822
Query: 135 LFQNFPHHVNPVFGGTFSPQIGLA--------QTQHHQQPPPP--APAPQPAQPAQPPQA 184
N V+PV +F P+ L+ T H PP P AP P P P
Sbjct: 823 ---NLSSPVSPV-EASFLPENSLSFQGSKDSPATTHSPTPPSPKGAPTPSAVTPLSPKGV 878
Query: 185 QPPQQRRSPASPSQAPYAQRSAAAAYGHQPIMTSKPSSSSAVAAAAAAAAASSASSSWNT 244
P + S P+ + A Q S SSS A A A AS S
Sbjct: 879 TLPPKETPTPSVVNLPFPKEGPATPAPKQAPALSMTSSSPKKARATPAPKGIPASPSPKG 938
Query: 245 HQSVNAAWSAPSNPWGGLQAGRDPRRAVGVGVGVGVGVPSPL-NPISPLKKPFSSNVIAP 303
+ AA P +P GG A P+ A PSP P +P K + A
Sbjct: 939 APTPPAA--TPPSPKGG-PATPSPKWA---PTPPAATPPSPKGGPATPSPKGAPTPPAAT 992
Query: 304 PKFPRAAPLT 313
P P+ P T
Sbjct: 993 PPSPKGGPAT 1002
Score = 50.4 bits (119), Expect = 5e-06
Identities = 81/322 (25%), Positives = 109/322 (33%), Gaps = 40/322 (12%)
Query: 26 PQPESSVSEAPSTPLS--------SETPKP--------EENSAVPALSPAAAPPAPNGPD 69
P P+ + + + TPLS ETP P +E A PA A A +
Sbjct: 859 PSPKGAPTPSAVTPLSPKGVTLPPKETPTPSVVNLPFPKEGPATPAPKQAPALSMTSSSP 918
Query: 70 KMQMESPLLPGLSFHQPPQQPPPPQEPAAPGASLSPSFGST-WSTGTTNAVEDSFFQGIT 128
K +P G+ P+ P P P P+ S W+ A S G
Sbjct: 919 KKARATPAPKGIPASPSPKGAPTPPAATPPSPKGGPATPSPKWAPTPPAATPPSPKGG-- 976
Query: 129 PVNGTMLFQNFPHHVNPVF--GGTFSPQIGLAQTQHHQQPPPP----APAPQPAQPAQPP 182
P + P P GG +P A T PP P A P P + PP
Sbjct: 977 PATPSPKGAPTPPAATPPSPKGGPATPSPKGAPTPPAVTPPSPKGSPAATPFPKGASTPP 1036
Query: 183 QAQPPQQRRSPAS---PSQAPYAQRSAAAAYGHQPIMTSKPSSSSAVAAAAAAAAASSAS 239
A PP + SPA+ P AP + + P S + + AA + A+
Sbjct: 1037 AATPPSPKGSPAATPLPKGAPTTPAATLPSPKGGPATPSLKGAPTPPAATPPSPKGGPAT 1096
Query: 240 SSWNTHQSVNAAWSAPSNPWGGL-----QAGRDPRRAVGVGVGVGVGVPSPLN-PISPLK 293
S AA P +P GGL + A G+ P P P +P
Sbjct: 1097 PSPKGAPMPPAA--TPPSPKGGLATPPHKGAPTTPAATPPSPKGGLATPPPKGAPTTPAA 1154
Query: 294 KPFS--SNVIAPPKFPRAAPLT 313
P S + PP P+ AP T
Sbjct: 1155 TPPSPKGGLATPP--PKGAPTT 1174
Score = 50.4 bits (119), Expect = 5e-06
Identities = 74/315 (23%), Positives = 106/315 (33%), Gaps = 35/315 (11%)
Query: 26 PQPESSVSEAPSTPLSSE----TPKPEENSAVPALSPA------AAPPAPNGPDKMQMES 75
P P+ + + +TP S + TP P+ PA +P A PP P+ +
Sbjct: 1235 PSPKGAPTTPAATPPSPKGGPATPPPKGAPTPPAATPPSLKGGLATPPHKGAPNPAVVTP 1294
Query: 76 PLLPGLSFHQPPQQPPPPQEPAAPGASLSPSFGSTWSTGTTNAVEDSFFQGITPVNGTML 135
P G PP+ P P P SP T AV +G TP
Sbjct: 1295 PSPKGGPATSPPKGAPTPPAATPPSPKGSPGTPPPKGAPTPPAVTPPSPKG-TP------ 1347
Query: 136 FQNFPHHVNPVFGGTFSPQ-----IGLAQTQHHQQPP---PPAPAPQPAQPAQPPQAQPP 187
P GG +P A T H+ P PP+P PA P+ P+ P
Sbjct: 1348 --TLPATTPSSKGGPTTPSSKEGPTPPAATPSHKGGPAMTPPSPKRGPAIPS--PKGDPT 1403
Query: 188 QQRRSPASPSQAPYA----QRSAAAAYGHQPIMTSKPSSSSAVAAAAAAAAASSASSSWN 243
P SP +AP + +A + G P S A +A + SS
Sbjct: 1404 SPAVIPLSPKKAPATPVTREGAATPSKGDLTPPAVTPVSLKKAPATSAPKGGPATPSSKG 1463
Query: 244 THQSVNAAWSAPSNPWGGLQ--AGRDPRRAVGVGVGVGVGVPSPLNPISPLKKPFSSNVI 301
+P P Q P++A +G + P SP + P + +
Sbjct: 1464 DPTLPAVTPPSPKEPPAPKQVATSSSPKKAPATPAPMGAPTLPAVIPSSPKEVPATPSSR 1523
Query: 302 APPKFPRAAPLTSKS 316
P P A L+ K+
Sbjct: 1524 RDPIAPTATLLSKKT 1538
Score = 48.1 bits (113), Expect = 3e-05
Identities = 68/299 (22%), Positives = 101/299 (33%), Gaps = 57/299 (19%)
Query: 26 PQPESSVSEAPSTPLSSE----TPKPEENSAVPALSPAAAPPAPNGPDKMQMESPLLPGL 81
P P+ + + +TP S + TP P+ +PAA PP+P G P P
Sbjct: 1212 PSPKGAPTTPAATPPSPKGGLATPSPKG----APTTPAATPPSPKG-------GPATP-- 1258
Query: 82 SFHQPPQQPPPPQEPAAPGASLSPSFGSTWSTGTTNAVEDSFFQGITPVNGTMLFQNFPH 141
PP+ P P PAA SL + G N P
Sbjct: 1259 ----PPKGAPTP--PAATPPSLKGGLATPPHKGAPN----------------------PA 1290
Query: 142 HVNPVFGGTFSPQIGLAQTQHHQQPPPPA---PAPQPAQPAQPPQAQPPQQRRSPASPSQ 198
V P SP+ G A + P PPA P+P+ + PP+ P +P SP
Sbjct: 1291 VVTPP-----SPKGGPATSPPKGAPTPPAATPPSPKGSPGTPPPKGAPTPPAVTPPSPKG 1345
Query: 199 APYAQRSAAAAYGHQPIMTSKPSSSSAVAAAAAAAAASSASSSWNTHQSVNAAWSAPSNP 258
P + ++ G +SK + A + + S ++ + P++P
Sbjct: 1346 TPTLPATTPSSKGGPTTPSSKEGPTPPAATPSHKGGPAMTPPSPKRGPAIPSPKGDPTSP 1405
Query: 259 WGGLQAGRDPRRAVGVGV-GVGVGVPSPLNPISPLKKPFSSNVIAPPKFPRAAPLTSKS 316
P++A V G PS + P P S P+ P T S
Sbjct: 1406 ---AVIPLSPKKAPATPVTREGAATPSKGDLTPPAVTPVSLKKAPATSAPKGGPATPSS 1461
Score = 46.6 bits (109), Expect = 8e-05
Identities = 71/322 (22%), Positives = 104/322 (32%), Gaps = 26/322 (8%)
Query: 14 PQPQQQQRQQQQPQPESSVSEAPSTPLSSETPKPEENSAVPALSPAAAPPAPNGPDKMQM 73
P P+Q P+ +P P+ PA +P + P P
Sbjct: 903 PAPKQAPALSMTSSSPKKARATPAPKGIPASPSPKGAPTPPAATPPSPKGGPATPSPKWA 962
Query: 74 ESPLLPGLSFHQP---PQQPPPPQEPAAPGASLSPSFGSTWSTGTTNAVEDSFFQGITPV 130
+P P + P P P P P P A+ G + A +P
Sbjct: 963 PTP--PAATPPSPKGGPATPSPKGAPTPPAATPPSPKGGPATPSPKGAPTPPAVTPPSP- 1019
Query: 131 NGTMLFQNFPHHVN-PVFGGTFSPQIGLAQTQHHQQPPP------PAPAPQPAQPA---- 179
G+ FP + P SP+ A T + P P+P PA P+
Sbjct: 1020 KGSPAATPFPKGASTPPAATPPSPKGSPAATPLPKGAPTTPAATLPSPKGGPATPSLKGA 1079
Query: 180 -QPPQAQPPQQRRSPASPSQAPYAQRSAAAAYGHQPIMTSKPSSSSAVAAAAAAAAASSA 238
PP A PP + PA+PS AA + + + P + AA +
Sbjct: 1080 PTPPAATPPSPKGGPATPSPKGAPMPPAATPPSPKGGLATPPHKGAPTTPAATPPSPKGG 1139
Query: 239 SSSWNTHQSVNAAWSAPSNPWGGLQAGRDPRRAVGVGVGV------GVGVPSPLN-PISP 291
++ + + P +P GGL A P+ A G+ PSP P +P
Sbjct: 1140 LATPPPKGAPTTPAATPPSPKGGL-ATPPPKGAPTTPAATPPSPKGGLATPSPKGAPTTP 1198
Query: 292 LKKPFSSNVIAPPKFPRAAPLT 313
P S P+ AP T
Sbjct: 1199 AATPPSPKGGLATPSPKGAPTT 1220
Score = 42.7 bits (99), Expect = 0.001
Identities = 42/194 (21%), Positives = 67/194 (34%), Gaps = 40/194 (20%)
Query: 12 TQPQPQQQQRQQQQPQPESSVSEAPSTPLSSETPK-----PEENSAVPALSPAAAPPAPN 66
T P P++ +Q SS +AP+TP P P VPA + P
Sbjct: 1471 TPPSPKEPPAPKQVAT-SSSPKKAPATPAPMGAPTLPAVIPSSPKEVPATPSSRRDPIAP 1529
Query: 67 GPDKMQMESP--LLPGLSFHQPPQQPPPPQE-PAAPGASLSPSFGSTWSTGTTNAVEDSF 123
+ ++P L P + P P P++ PA P +P+ S+ + AV S
Sbjct: 1530 TATLLSKKTPATLAPKEALIPPAMTVPSPKKTPAIPTPKEAPATPSSKEASSPPAVTPST 1589
Query: 124 FQGITPVNGTMLFQNFPHHVNPVFGGTFSPQIGLAQTQHHQQPPPPAPAPQPAQPAQPPQ 183
++G ++ PP +P P + PP
Sbjct: 1590 YKGAPSPKELLI-------------------------------PPAVTSPSPKEAPTPPA 1618
Query: 184 AQPPQQRRSPASPS 197
PP + PA+P+
Sbjct: 1619 VTPPSPEKGPATPA 1632
Score = 42.4 bits (98), Expect = 0.001
Identities = 59/252 (23%), Positives = 87/252 (34%), Gaps = 43/252 (17%)
Query: 11 KTQPQPQQQQRQQQQPQPESSVSEAPSTPLSSETPKPEENSAVP-----ALSPAAAPPAP 65
K P P + P +S + TP ++ P P+ + P PA PP+P
Sbjct: 1284 KGAPNPAVVTPPSPKGGPATSPPKGAPTPPAATPPSPKGSPGTPPPKGAPTPPAVTPPSP 1343
Query: 66 NGPDKMQMESPLLPG----------------LSFHQ--PPQQPPPPQE-PAAPGASLSPS 106
G + +P G H+ P PP P+ PA P P+
Sbjct: 1344 KGTPTLPATTPSSKGGPTTPSSKEGPTPPAATPSHKGGPAMTPPSPKRGPAIPSPKGDPT 1403
Query: 107 FGSTWSTGTTNAVEDSFFQ--GITPVNGTMLFQNFPHHVNPV----FGGTFSPQIGLAQT 160
+ A + TP G + P V PV T +P+ G A
Sbjct: 1404 SPAVIPLSPKKAPATPVTREGAATPSKGDLT----PPAVTPVSLKKAPATSAPKGGPATP 1459
Query: 161 QHHQQPPPPAPAPQPAQPAQPPQAQPPQQRRSPASPSQAPYAQRSAAAAYGHQPIMTSKP 220
+ P PA P P +PP P+Q + +SP +AP + A G + P
Sbjct: 1460 S--SKGDPTLPAVTPPSPKEPP---APKQVATSSSPKKAP----ATPAPMGAPTLPAVIP 1510
Query: 221 SSSSAVAAAAAA 232
SS V A ++
Sbjct: 1511 SSPKEVPATPSS 1522
Score = 42.4 bits (98), Expect = 0.001
Identities = 48/210 (22%), Positives = 75/210 (35%), Gaps = 35/210 (16%)
Query: 36 PSTPLSSETPKPEENSAVPALSPAAAPPAPNGPDKMQMESPLLPGLSFHQPPQQPPPP-- 93
P +P PK S+ P +PA PAP G +P LP + P + P P
Sbjct: 1472 PPSPKEPPAPKQVATSSSPKKAPAT--PAPMG-------APTLPAVIPSSPKEVPATPSS 1522
Query: 94 -QEPAAPGASLSPSFGSTWSTGTTNAVEDSFFQGITPVNGTMLFQNFPHHVNPVFGGTFS 152
++P AP A+L T T A +++ V P +
Sbjct: 1523 RRDPIAPTATLLSK-----KTPATLAPKEALIPPAMTVPSPKKTPAIP-----------T 1566
Query: 153 PQIGLAQTQHHQQPPPPAP-------APQPAQPAQPPQAQPPQQRRSPASPSQAPYAQRS 205
P+ A + PPA AP P + PP P + +P P+ P +
Sbjct: 1567 PKEAPATPSSKEASSPPAVTPSTYKGAPSPKELLIPPAVTSPSPKEAPTPPAVTPPSPEK 1626
Query: 206 AAAAYGHQPIMTSKPSSSSAVAAAAAAAAA 235
A + TS P + S++ + + A+
Sbjct: 1627 GPATPAPKGTPTSPPVTPSSLKDSPTSPAS 1656
Score = 36.2 bits (82), Expect = 0.11
Identities = 57/240 (23%), Positives = 72/240 (30%), Gaps = 58/240 (24%)
Query: 8 DKSKTQPQPQQQQRQQQQPQPESSVSEAPSTPLSSET--PKPEENSAVPALSPA-----A 60
D SKT + P S + P T + E PKPE S A SP A
Sbjct: 1744 DSSKTAKGKDASHSPKGPLAPPESKASTPLTAAAFEKVLPKPESASVSAAPSPPVSLPLA 1803
Query: 61 APPAPNGPDKMQMESPLLPGLSFHQPPQQPPPPQEPAAPGASLSPSFGSTWSTGTTNAVE 120
P P P K Q P PGL P +P AP A E
Sbjct: 1804 PSPVPTLPPKQQF-LPSSPGLVLESP-------SKPLAP------------------ADE 1837
Query: 121 DSFFQGITPVNGTMLFQNFPHHVNPVFGGTFSPQIGLAQTQHHQQPPPPAPAPQPAQPA- 179
D I P P+ GG + L + P P P QP
Sbjct: 1838 DELLPLIPP--------------EPISGGVPFQSV-LVNMPTPKSAGIPVPTPSAKQPVT 1882
Query: 180 ---------QPPQAQPPQQRRSPASPSQAPYAQRSAAAAYGHQPIMTSKPSSSSAVAAAA 230
P+ ++ + AQ +AAA +P+ +K S S A A
Sbjct: 1883 KNNKGSGTESDSDESVPELEEQDSTQATTQQAQLAAAAEIDEEPVSKAKQSRSEKKARKA 1942
Score = 34.3 bits (77), Expect = 0.40
Identities = 75/341 (21%), Positives = 115/341 (33%), Gaps = 59/341 (17%)
Query: 4 DLLMDKSKTQPQPQQQQRQQQQPQPESSVSEAPSTPLSSET--------------PKPEE 49
+ L+ + T P P+ + P P+ EAP+TP S E P P+E
Sbjct: 1546 EALIPPAMTVPSPK---KTPAIPTPK----EAPATPSSKEASSPPAVTPSTYKGAPSPKE 1598
Query: 50 NSAVPALSPAAAPPAPNGPDKMQMESPLLPGLSFHQPPQQPPPPQEPAAPGASLSPSF-G 108
+ PA P+P E+P P ++ PP P PA G SP
Sbjct: 1599 L----LIPPAVTSPSPK-------EAPTPPAVT---PPSPEKGPATPAPKGTPTSPPVTP 1644
Query: 109 STWSTGTTNAVEDSFFQGITPVNGTMLFQNFPHHVNP-------VFGGTFSPQIGLAQTQ 161
S+ T+ + G T + + P P V S I A T+
Sbjct: 1645 SSLKDSPTSPASVTCKMGATVPQAS---KGLPAKKGPTALKEVLVAPAPESTPIITAPTR 1701
Query: 162 HHQQ-------PPPPAPAPQPAQPAQPPQAQPPQQRRSPASPSQAPYAQRSAAAAYGHQP 214
Q PP P P ++ P + P + A+ A+ P
Sbjct: 1702 KGPQTKKSSATSPPICPDPSAKNGSKGPLSTVAPAPLLPVQKDSSKTAKGKDASHSPKGP 1761
Query: 215 IMTSKPSSSSAVAAAAAAAAASSASSSWNTHQSVNAAWSAP-SNPWGGLQAGRDPRRAVG 273
+ + +S+ + AAA S+ SV+AA S P S P P +
Sbjct: 1762 LAPPESKASTPLTAAAFEKVLPKPESA-----SVSAAPSPPVSLPLAPSPVPTLPPKQQF 1816
Query: 274 VGVGVGVGVPSPLNPISPLKKPFSSNVIAPPKFPRAAPLTS 314
+ G+ + SP P++P + +I P P S
Sbjct: 1817 LPSSPGLVLESPSKPLAPADEDELLPLIPPEPISGGVPFQS 1857
Score = 32.0 bits (71), Expect = 2.0
Identities = 23/79 (29%), Positives = 34/79 (43%), Gaps = 10/79 (12%)
Query: 166 PPPPAPAPQPAQPAQPPQAQP-PQQRRSPASPSQAPYAQRSAAAAY---------GHQPI 215
PPP +PAPQ + QA P P ++P + P+ Q S+ A P
Sbjct: 46 PPPCSPAPQQCPLSAANQASPFPSPSTIASTPLEVPFPQSSSGTALPLGTAPEAPTFLPN 105
Query: 216 MTSKPSSSSAVAAAAAAAA 234
+ P S +A+A A+ A
Sbjct: 106 LIGPPISPAALALASPMIA 124
Score = 29.6 bits (65), Expect = 9.9
Identities = 75/301 (24%), Positives = 106/301 (35%), Gaps = 75/301 (24%)
Query: 31 SVSEAPSTPLSSETPKPEENSAVPALSPAAAPPAPNGPDKMQMESPL--------LPGLS 82
S S +P PLS PE A +L P P G M SPL + S
Sbjct: 575 STSSSPEIPLS-----PEATLAKKSLGE----PLPIGKPASSMTSPLGVNSSASVIKTDS 625
Query: 83 FHQPPQQPPP-------------PQEPAAPGASLSPSFGSTWSTGTTNAVEDSFFQG--- 126
+ P P P E A P A ++P+ ST TT A F +G
Sbjct: 626 YAGPDSAGPLLKSSLITPTVAAFPLESADP-AGVAPTTAKGTSTYTTTA--SPFLEGTVS 682
Query: 127 ITPVNGTMLFQNFPHHVNPVFGGTFSPQIGLAQTQHHQQPPPPAPAPQPAQPAQPPQAQP 186
+ P N +PV GT + L + P AP+PQ
Sbjct: 683 LAPKN------------HPVKEGTLTT---LPLVPTASENCPVAPSPQNTCAPLATLVLA 727
Query: 187 PQQRRSPASPSQAPYAQRSAAAAYGHQPIMTSKPSSSSAVAAAAAAAAA--------SSA 238
P+ +S SPS P P T K S +A A A++ S A
Sbjct: 728 PEIPKSVPSPSLPP----------AGTPPGTKKVDGISHTSALAPVASSPKECPTEDSGA 777
Query: 239 SSSWNTHQSVNAAWSAPSNPWG---GLQAGRDPRRAVGVGVGVGVGVPSPLNPISPLKKP 295
S++ ++ ++ +PS P G Q R P + G +G S +P+SP++
Sbjct: 778 SATASSKGTLTYLADSPS-PLGVSVSPQTKRPPTKKGSAGPDTPIGNLS--SPVSPVEAS 834
Query: 296 F 296
F
Sbjct: 835 F 835
>gi|163914392 glioma tumor suppressor candidate region gene 1 [Homo
sapiens]
Length = 1560
Score = 58.5 bits (140), Expect = 2e-08
Identities = 77/302 (25%), Positives = 102/302 (33%), Gaps = 40/302 (13%)
Query: 14 PQPQQQQRQQQQPQPESSVSEAPSTPLSSETPKPEENSAVPAL---------SPAAAPPA 64
P P + + P SVS PS P P P+ +P + P A+ PA
Sbjct: 792 PSPHPTRPPSRPPSRPQSVSRPPSEPPLHPCPPPQAPPTLPGIFVIQNQLGVPPPASNPA 851
Query: 65 PNGPDKMQMESPLLPGLSFHQPPQQPPPPQEPAAPGASLSPSFGSTWSTGTTNAVEDSFF 124
P P Q PL P QPP+ P PP P ++ S S+ ++ A S F
Sbjct: 852 PTAPGPPQ--PPLRPQ---SQPPEGPLPPAPHLPPSSTSSAVASSSETSSRLPAPTPSDF 906
Query: 125 QGITPVNGTMLFQNFPHHVNPVFGGTFSPQIGLAQTQHHQQPPPPAPAPQPAQPAQPPQA 184
Q FP P T P + L + PP P P+ Q P
Sbjct: 907 Q-----------LQFPPSQGPHKSPTPPPTLHLVP----EPAAPPPPPPRTFQMVTTPFP 951
Query: 185 QPPQQRRSPASPSQAP---YAQRSAAAAYGHQPIMTSKPSSSSAVAAAAAAAAASSASSS 241
PQ + Q P Q A A TS +S A+ + A S + +
Sbjct: 952 ALPQPKALLERFHQVPSGIILQNKAGGAPAAPQTSTSLGPLTSPAASVLVSGQAPSGTPT 1011
Query: 242 WNTHQSVNAAWSAPSNP-----WGGLQAGRDPRRAVGVGVGVGVGVPSPL---NPISPLK 293
+H A +A P A P V G G PS L + +S LK
Sbjct: 1012 APSHAPAPAPMAATGLPPLLPAENKAFASNLPTLNVAKAASSGPGKPSGLQYESKLSGLK 1071
Query: 294 KP 295
KP
Sbjct: 1072 KP 1073
Score = 49.3 bits (116), Expect = 1e-05
Identities = 58/209 (27%), Positives = 79/209 (37%), Gaps = 44/209 (21%)
Query: 28 PESSVSEAPSTPLSSET---PKPEENSAVPALSP---AAAP---PAPNGPDKMQMESPLL 78
P + AP+TP++ P+ ++ A PA +P AAAP P P+ + ++PL
Sbjct: 727 PPPAQDPAPATPVAKGAGLGPQAPDSQASPAPAPQIPAAAPLKGPGPSSSPSLPHQAPL- 785
Query: 79 PGLSFHQPPQQPP-PPQEPAAPGASLSPSFGSTWSTGTTNAVEDSFFQGITPVNGTMLFQ 137
G S H P P PP P + S+S P + L
Sbjct: 786 -GDSPHLPSPHPTRPPSRPPSRPQSVS-----------------------RPPSEPPLHP 821
Query: 138 NFPHHVNPVFGGTFSPQIGLAQTQHHQQPPPPAPAPQPAQPAQP---PQAQPPQQRRSPA 194
P P G F + Q Q PP PAP P QP PQ+QPP+ PA
Sbjct: 822 CPPPQAPPTLPGIF-----VIQNQLGVPPPASNPAPTAPGPPQPPLRPQSQPPEGPLPPA 876
Query: 195 SPSQAPYAQRSAAAAYGHQPIMTSKPSSS 223
P P + SA A+ P+ S
Sbjct: 877 -PHLPPSSTSSAVASSSETSSRLPAPTPS 904
Score = 48.9 bits (115), Expect = 2e-05
Identities = 54/206 (26%), Positives = 71/206 (34%), Gaps = 45/206 (21%)
Query: 15 QPQQQQRQQQQPQPESSVSEAPSTPLSSETPKPEENSAVPALSPAAAPPAPNGPDKMQM- 73
QPQ QQ Q P P+++ +TP S V P+A P A D +QM
Sbjct: 641 QPQAQQ-PPQAPTPQAAAPPQATTPQPSPGLASSPEKIVLGQPPSATPTAILTQDSLQMF 699
Query: 74 ------ESPLL---PGLSF-------HQPPQQPPPPQEPAAPGASLSPSFGSTWSTGTTN 117
+ PL P LS PP Q P P P A GA L P + +
Sbjct: 700 LPQERSQQPLSAEGPHLSVPASVIVSAPPPAQDPAPATPVAKGAGLGPQAPDS----QAS 755
Query: 118 AVEDSFFQGITPVNGTMLFQNFPHHVNPVFGGTFSPQIGLAQTQHHQQP---PPPAPAPQ 174
P+ G G + SP + HQ P P P+P
Sbjct: 756 PAPAPQIPAAAPLKGP--------------GPSSSPSL------PHQAPLGDSPHLPSPH 795
Query: 175 PAQPAQPPQAQPPQQRRSPASPSQAP 200
P +P P ++P R P+ P P
Sbjct: 796 PTRPPSRPPSRPQSVSRPPSEPPLHP 821
Score = 47.0 bits (110), Expect = 6e-05
Identities = 80/304 (26%), Positives = 105/304 (34%), Gaps = 38/304 (12%)
Query: 28 PESSVS--EAPSTPLSSETPKPEENSAVPALSPAAAPPAPNGPDKMQMESPLLPGLSFHQ 85
P S+V+ P + TP A P L+ AP AP + +PL GL Q
Sbjct: 589 PPSAVAMLNTPDGLVQPATPAAATGEAAPVLTVQPAPQAPPA-----VSTPLPLGL---Q 640
Query: 86 PPQQPPPPQEPAAPGASLSPSFGSTWSTGTTNAVEDSFFQGITPVNGTMLFQNFPHHVNP 145
PQ PPQ P A+ + S G ++ E T + +
Sbjct: 641 QPQAQQPPQAPTPQAAAPPQATTPQPSPGLASSPEKIVLGQPPSATPTAILTQ--DSLQM 698
Query: 146 VFGGTFSPQIGLAQTQHHQQP-------PPPAPAPQPAQPAQPPQAQPPQQRRSPASPSQ 198
S Q A+ H P PPPA P PA P PQ S ASP+
Sbjct: 699 FLPQERSQQPLSAEGPHLSVPASVIVSAPPPAQDPAPATPVAKGAGLGPQAPDSQASPAP 758
Query: 199 APYAQRSAAAAYGHQPIMTSKPSSSSAVAAAAAAAAASSASSSWNTH---------QSVN 249
AP Q AAA P+ PSSS ++ A + S T QSV+
Sbjct: 759 AP--QIPAAA-----PLKGPGPSSSPSLPHQAPLGDSPHLPSPHPTRPPSRPPSRPQSVS 811
Query: 250 AAWSAPSNPWGGLQAGRDPRRAVGVGVGVG-VGVPSPLNPISPLKKPFSSNVIAPPKFPR 308
S P P + P G+ V +GVP P + +P + P P
Sbjct: 812 RPPSEP--PLHPCPPPQAPPTLPGIFVIQNQLGVPPPASNPAPTAPGPPQPPLRPQSQPP 869
Query: 309 AAPL 312
PL
Sbjct: 870 EGPL 873
Score = 39.7 bits (91), Expect = 0.010
Identities = 54/244 (22%), Positives = 87/244 (35%), Gaps = 30/244 (12%)
Query: 1 MQDDLLMDKSKTQPQPQQQQRQQQQPQPESSVSEAPSTPLSSETPKPEENSAVPALSPAA 60
+Q+ L + + P P Q +P+S E P P P ++ + ++
Sbjct: 837 IQNQLGVPPPASNPAPTAPGPPQPPLRPQSQPPEGPLPPAPHLPPSSTSSAVASSSETSS 896
Query: 61 APPAPNGPDKMQMESPLLPGLSFHQPPQQPPP---PQEPAAPGASLSPSFGSTWSTGTTN 117
PAP P Q++ P P H+ P PP EPAAP +F +
Sbjct: 897 RLPAPT-PSDFQLQFP--PSQGPHKSPTPPPTLHLVPEPAAPPPPPPRTFQMVTTPFPAL 953
Query: 118 AVEDSFFQGITPVNGTMLFQNFPHHVNPVFGGTFSPQIGLAQTQHHQQPPPPAPAPQPAQ 177
+ + V ++ Q N G +PQ + P +PA
Sbjct: 954 PQPKALLERFHQVPSGIILQ------NKAGGAPAAPQTSTS------LGPLTSPAASVLV 1001
Query: 178 PAQPPQAQPPQQRRSPASPSQAPYAQRSAAAAYGHQPIMTSKPSSSSAVAAAAAAAAASS 237
Q P +P +PS AP + AA G P++ P+ + A A+ +
Sbjct: 1002 SGQAPSG-------TPTAPSHAP--APAPMAATGLPPLL---PAENKAFASNLPTLNVAK 1049
Query: 238 ASSS 241
A+SS
Sbjct: 1050 AASS 1053
Score = 38.1 bits (87), Expect = 0.028
Identities = 50/217 (23%), Positives = 83/217 (38%), Gaps = 32/217 (14%)
Query: 1 MQDDLLMDKSKTQPQPQQQQRQQQQPQPESSVSEAPSTPL--SSETPKPEENSAVPALSP 58
M D + + + KT +Q +++P S S + P+ SSE + + + + +P
Sbjct: 1174 MIDRMFIQEEKTT-LALDKQLAKEKPDEYVSSSRSLGLPIAASSEGHRLPGHGPLSSSAP 1232
Query: 59 AAAP-PAPNGPDKMQMESPLLPGLSFHQPPQQPPPPQEPAAPGASLSPSFGSTWSTGTTN 117
A+ P P+ P K+ + G P A +SLS S S+ + + +
Sbjct: 1233 GASTQPPPHLPTKLVIRHGGAGG----------SPSVTWARASSSLSSSSSSSSAASSLD 1282
Query: 118 AVEDSFFQGITPVNGTMLFQNFPHHVNPVFGGTFSPQIGLAQTQH-------HQQPPPPA 170
A ED G P + + + GL++ H HQ PPPPA
Sbjct: 1283 ADED----GPMPSRNRPPIKTYEARSRIGLKLKIKQEAGLSKVVHNTALDPVHQPPPPPA 1338
Query: 171 PAPQPAQPAQPPQAQPPQQRRS-------PASPSQAP 200
P +PP PP + + PA+P + P
Sbjct: 1339 TLKVAEPPPRPPPPPPPTGQMNGTVDHPPPAAPERKP 1375
Score = 36.6 bits (83), Expect = 0.081
Identities = 96/401 (23%), Positives = 126/401 (31%), Gaps = 116/401 (28%)
Query: 13 QPQPQQQQRQQQQPQPESSVSEAPSTPLSSETPKPEENSAV----PALSPAAAPPAPNGP 68
+P QQ + Q + +A + S P P + V PA + AAPP P G
Sbjct: 383 EPGALPQQPKAPQNLTFMAAGKAGQNVVLSGFPAPALQANVFKQPPATTTGAAPPQPPGA 442
Query: 69 DKMQMESPLL-PGLSFHQPPQQPPPPQE----PAAPGASLSPSFGSTWST--GTTNAVED 121
M LL G S P Q P Q P AP L + + G A
Sbjct: 443 LSKPMSVHLLNQGSSIVIPAQHMLPGQNQFLLPGAPAVQLPQQLSALPANVGGQILAAAA 502
Query: 122 SFFQGITPVNGTMLFQNF--PHHVNPVFG---------------------GTFSPQIGLA 158
G N + QN P + PV F + LA
Sbjct: 503 PHTGGQLIANPILTNQNLAGPLSLGPVLAPHSGAHSAHILSAAPIQVGQPALFQMPVSLA 562
Query: 159 --QTQHHQQPPPPAPAP------------------------QPAQPA------------Q 180
QP P PA QPA PA Q
Sbjct: 563 AGSLPTQSQPAPAGPAATTVLQGVTLPPSAVAMLNTPDGLVQPATPAAATGEAAPVLTVQ 622
Query: 181 P-PQAQP------------PQQRRSP-------ASPSQAPYAQRSAAAAYGHQPIMTSKP 220
P PQA P PQ ++ P A+P QA Q S A + I+ +P
Sbjct: 623 PAPQAPPAVSTPLPLGLQQPQAQQPPQAPTPQAAAPPQATTPQPSPGLASSPEKIVLGQP 682
Query: 221 SSSSAVAAAAAAA--------AASSASSSWNTHQSVNAAWSAPSNPWGGLQAGRDPRRAV 272
S++ A + + S+ H SV A+ + P +DP A
Sbjct: 683 PSATPTAILTQDSLQMFLPQERSQQPLSAEGPHLSVPASVIVSAPP-----PAQDPAPAT 737
Query: 273 GVGVGVGVGVPSPLNPISPLKKPFSSNVIAP-PKFPRAAPL 312
V G G+G +P + SP AP P+ P AAPL
Sbjct: 738 PVAKGAGLGPQAPDSQASP----------APAPQIPAAAPL 768
>gi|110832843 TBP-associated factor 4 [Homo sapiens]
Length = 1085
Score = 58.2 bits (139), Expect = 3e-08
Identities = 76/265 (28%), Positives = 104/265 (39%), Gaps = 32/265 (12%)
Query: 24 QQPQPESS----VSEAPSTPLSSETPKPEENSAVPALSPAAAP------PAPNGPDKMQM 73
Q+P P S V P+ P + P PE ++ A PAAA PAP GP K
Sbjct: 103 QRPGPPSPRRPLVPAGPAPPAAKLRPPPEGSAGSCAPVPAAAAVAAGPEPAPAGPAKPAG 162
Query: 74 ESPLL----PGLSFHQPPQQPPPPQEPAAPGASLSPSFGSTWSTGTTNAVEDSFFQGITP 129
+ L PG P P P +PA PGA+ + + GS + +A + ++
Sbjct: 163 PAALAARAGPGPGPGPGPGPGPGPGKPAGPGAAQTLN-GSAALLNSHHAAAPA----VSL 217
Query: 130 VN-GTMLFQNFPHHVNPVFGGTFSPQIGLAQTQHHQQPPPPAPAPQPAQPAQPPQAQPPQ 188
VN G P P P +G A P P AP+P A P A PP
Sbjct: 218 VNNGPAALLPLPKPAAPGTVIQTPPFVGAAAP-----PAPAAPSPPAAPAPAAPAAAPPP 272
Query: 189 QRRSPASPSQAP-YAQRSAAAAYGHQPIMTSKPSSSSAVAAAAAAAAASSASSSWNTHQS 247
+PA+ ++ P + AA P ++ S+ A A A AA A S
Sbjct: 273 PPPAPATLARPPGHPAGPPTAAPAVPPPAAAQNGGSAGAAPAPAPAAGGPAGVSGQPGPG 332
Query: 248 VNAAWSAPSNPWGGLQAGRDPRRAV 272
AA AP G++A P+R V
Sbjct: 333 AAAAAPAP-----GVKA-ESPKRVV 351
Score = 43.5 bits (101), Expect = 7e-04
Identities = 53/222 (23%), Positives = 86/222 (38%), Gaps = 15/222 (6%)
Query: 25 QPQPESSVSEAPSTPLSSETPKPEENSAVPALSPAAAPPAPNGPDKMQMESPLLPGLSFH 84
QP P ++ + AP+ + +E+PK V A PAA A +GP + P +
Sbjct: 328 QPGPGAAAA-APAPGVKAESPK----RVVQAAPPAAQTLAASGPASTAASMVIGPTMQGA 382
Query: 85 QPPQQPPPPQEPAAPGASLSPSFGSTWS--TGTTNAVEDSFFQGITPVNGTMLFQNFPHH 142
P PP P P + G+ + T A +TP P +
Sbjct: 383 LPSPAAVPPPAPGTPTGLPKGAAGAVTQSLSRTPTATTSGIRATLTPTVLAPRLPQPPQN 442
Query: 143 VNPVFGGTFSPQIGLAQTQHHQ--QPPPPAPAPQPAQP-AQPPQAQPPQQRRSPASPSQA 199
+ P + L ++++ Q P A A AQ AQP P+ PA+P+ A
Sbjct: 443 PTNIQNFQLPPGMVLVRSENGQLLMIPQQALAQMQAQAHAQPQTTMAPR----PATPTSA 498
Query: 200 PYAQRSAAAAYGHQPIMTSKPSSSSAVAAAAAAAAASSASSS 241
P Q S A G PI+ + + ++ + + A S++
Sbjct: 499 PPVQISTVQAPG-TPIIARQVTPTTIIKQVSQAQTTVQPSAT 539
Score = 38.9 bits (89), Expect = 0.016
Identities = 43/149 (28%), Positives = 55/149 (36%), Gaps = 14/149 (9%)
Query: 144 NPVFGGTFSPQIGLAQTQHHQQPPPPAPAPQPAQPAQP----PQAQ-PPQQRRSPASPSQ 198
N V G+ + G + P AP P PA A+P PQ PP RR
Sbjct: 60 NHVVSGSPAGAAGAGPAAPAEGAPGAAPEPPPAGRARPGGGGPQRPGPPSPRRPLVPAGP 119
Query: 199 APYAQRSAAAAYGHQPIMTSKPSSSSAVAAAAAAAAASSASSSWNTHQSVNAAWSAPSNP 258
AP A + +P S + V AAAA AA + + + AA +A + P
Sbjct: 120 APPAAKL-------RPPPEGSAGSCAPVPAAAAVAAGPEPAPAGPAKPAGPAALAARAGP 172
Query: 259 WGGLQAGRDPRRAVGVGVGVGVGVPSPLN 287
G G P G G G G LN
Sbjct: 173 GPG--PGPGPGPGPGPGKPAGPGAAQTLN 199
Score = 34.3 bits (77), Expect = 0.40
Identities = 50/210 (23%), Positives = 65/210 (30%), Gaps = 57/210 (27%)
Query: 23 QQQPQPESSVSEAPSTPLSSETPKPEENSAVPALSPAAAPPAPNGPDKMQMESPLLPGLS 82
Q P ++ AP+ P P P A PA +P PPAP +
Sbjct: 239 QTPPFVGAAAPPAPAAPSPPAAPAP----AAPAAAPPPPPPAP---------------AT 279
Query: 83 FHQPPQQP--PPPQEPAAPGASLSPSFGSTWSTGTTNAVEDSFFQGITPVNGTMLFQNFP 140
+PP P PP PA P + + + GS G P
Sbjct: 280 LARPPGHPAGPPTAAPAVPPPAAAQNGGSA---------------GAAPAPA-------- 316
Query: 141 HHVNPVFGGTFSPQIGLAQTQHHQQPPPPAPAPQPAQPAQPPQAQPPQQRRSPASPSQAP 200
P GG QP P A A PA + + Q PA+ + A
Sbjct: 317 ----PAAGGPAGVS---------GQPGPGAAAAAPAPGVKAESPKRVVQAAPPAAQTLAA 363
Query: 201 YAQRSAAAAYGHQPIMTSKPSSSSAVAAAA 230
S AA+ P M S +AV A
Sbjct: 364 SGPASTAASMVIGPTMQGALPSPAAVPPPA 393
Score = 32.0 bits (71), Expect = 2.0
Identities = 23/87 (26%), Positives = 35/87 (40%), Gaps = 7/87 (8%)
Query: 19 QQRQQQQPQPESSVSEAPSTPLSSETPKPEENSAVPALSPAAAPPAPNGPDKMQMESPLL 78
QQ QQQ P P S + A + + S + + ++ A PP + + P
Sbjct: 676 QQSQQQPPPPTSQATTALTAVVLSSSVQRTAGKTAATVTSALQPPV------LSLTQPTQ 729
Query: 79 PGLSFHQPPQQPPPPQEPAAPGASLSP 105
G+ P P Q+P PGA + P
Sbjct: 730 VGVGKQGQP-TPLVIQQPPKPGALIRP 755
>gi|112382226 atrophin-1 like protein isoform b [Homo sapiens]
Length = 1012
Score = 57.4 bits (137), Expect = 4e-08
Identities = 85/345 (24%), Positives = 122/345 (35%), Gaps = 46/345 (13%)
Query: 8 DKSKTQPQPQQQQRQQQQP---QPESSVSEAPST--PLSSETPKPEENSAVPALSPAAAP 62
D QQQ Q QP Q + V+ APS+ P + + P P + A+ P +P
Sbjct: 166 DNESDSDSSAQQQMLQAQPPALQAPTGVTPAPSSAPPGTPQLPTPGPTPSATAVPPQGSP 225
Query: 63 PAPNGPDKMQMESPLLPGLSFHQP----PQQPPPPQEP--AAPGASLSPSFGSTWSTGTT 116
A P++ Q + +P Q PQ+PP P P +P L P GS
Sbjct: 226 TASQAPNQPQAPTAPVPHTHIQQAPALHPQRPPSPHPPPHPSPHPPLQPLTGSAGQPSAP 285
Query: 117 NAVEDSFFQGITPVNGTMLFQNFPHHVNPVFGGTFSPQ-------IGLAQTQHHQQPPPP 169
+ + P ++ H P PQ +G + +
Sbjct: 286 SHAQPPLHGQGPPGPHSLQAGPLLQHPGPPQPFGLPPQASQGQAPLGTSPAAAYPHTSLQ 345
Query: 170 APAPQPA-QPAQPPQAQP----PQQRRSPASPSQAPYAQRSAAAAYGHQPIMTSKPSSSS 224
PA Q A Q QPP+ QP P P P Q A A+ H P + S PS S
Sbjct: 346 LPASQSALQSQQPPREQPLPPAPLAMPHIKPPPTTPIPQLPAPQAHKHPPHL-SGPSPFS 404
Query: 225 AVAAAAAAAAASSASSSWNTHQSVNA-------------AWSAPSNPWGGLQAGRDPRRA 271
+ A A SS +TH +A S+P+ P G Q+ P
Sbjct: 405 -MNANLPPPPALKPLSSLSTHHPPSAHPPPLQLMPQSQPLPSSPAQPPGLTQSQNLPPPP 463
Query: 272 VGVGVGVGVGVPSPLNPISPLKKPFSSNVIAPPKFPRAAPLTSKS 316
P+ L+ ++P + PF+ + P P P T S
Sbjct: 464 AS-------HPPTGLHQVAP-QPPFAQHPFVPGGPPPITPPTCPS 500
Score = 41.2 bits (95), Expect = 0.003
Identities = 58/214 (27%), Positives = 70/214 (32%), Gaps = 60/214 (28%)
Query: 18 QQQRQQQQPQPESSVSEAPSTPLSSETPKPEENSAVPALSPAAA---PPAPNGPDKMQME 74
Q Q QQP E + P PL+ KP + +P L A PP +GP M
Sbjct: 350 QSALQSQQPPREQPL---PPAPLAMPHIKPPPTTPIPQLPAPQAHKHPPHLSGPSPFSMN 406
Query: 75 SPLLP--------GLSFHQPPQQPPPPQEPAAPGASLSPSFGSTWSTGTTNAVEDSFFQG 126
+ L P LS H PP PPP + P + PS G T +
Sbjct: 407 ANLPPPPALKPLSSLSTHHPPSAHPPPLQ-LMPQSQPLPS-SPAQPPGLTQS-------- 456
Query: 127 ITPVNGTMLFQNFPHHVNPVFGGTFSPQIGLAQTQHHQQPPPPAPAPQPAQPAQPP---- 182
QN P P T HQ P P A P P PP
Sbjct: 457 ----------QNLP-----------PPPASHPPTGLHQVAPQPPFAQHPFVPGGPPPITP 495
Query: 183 -----QAQPPQQRRSPASPSQAPYAQRSAAAAYG 211
+ PP P + +Q P S AAA G
Sbjct: 496 PTCPSTSTPP---AGPGTSAQPPC---SGAAASG 523
>gi|112382224 atrophin-1 like protein isoform a [Homo sapiens]
Length = 1566
Score = 57.4 bits (137), Expect = 4e-08
Identities = 85/345 (24%), Positives = 122/345 (35%), Gaps = 46/345 (13%)
Query: 8 DKSKTQPQPQQQQRQQQQP---QPESSVSEAPST--PLSSETPKPEENSAVPALSPAAAP 62
D QQQ Q QP Q + V+ APS+ P + + P P + A+ P +P
Sbjct: 720 DNESDSDSSAQQQMLQAQPPALQAPTGVTPAPSSAPPGTPQLPTPGPTPSATAVPPQGSP 779
Query: 63 PAPNGPDKMQMESPLLPGLSFHQP----PQQPPPPQEP--AAPGASLSPSFGSTWSTGTT 116
A P++ Q + +P Q PQ+PP P P +P L P GS
Sbjct: 780 TASQAPNQPQAPTAPVPHTHIQQAPALHPQRPPSPHPPPHPSPHPPLQPLTGSAGQPSAP 839
Query: 117 NAVEDSFFQGITPVNGTMLFQNFPHHVNPVFGGTFSPQ-------IGLAQTQHHQQPPPP 169
+ + P ++ H P PQ +G + +
Sbjct: 840 SHAQPPLHGQGPPGPHSLQAGPLLQHPGPPQPFGLPPQASQGQAPLGTSPAAAYPHTSLQ 899
Query: 170 APAPQPA-QPAQPPQAQP----PQQRRSPASPSQAPYAQRSAAAAYGHQPIMTSKPSSSS 224
PA Q A Q QPP+ QP P P P Q A A+ H P + S PS S
Sbjct: 900 LPASQSALQSQQPPREQPLPPAPLAMPHIKPPPTTPIPQLPAPQAHKHPPHL-SGPSPFS 958
Query: 225 AVAAAAAAAAASSASSSWNTHQSVNA-------------AWSAPSNPWGGLQAGRDPRRA 271
+ A A SS +TH +A S+P+ P G Q+ P
Sbjct: 959 -MNANLPPPPALKPLSSLSTHHPPSAHPPPLQLMPQSQPLPSSPAQPPGLTQSQNLPPPP 1017
Query: 272 VGVGVGVGVGVPSPLNPISPLKKPFSSNVIAPPKFPRAAPLTSKS 316
P+ L+ ++P + PF+ + P P P T S
Sbjct: 1018 AS-------HPPTGLHQVAP-QPPFAQHPFVPGGPPPITPPTCPS 1054
Score = 41.2 bits (95), Expect = 0.003
Identities = 58/214 (27%), Positives = 70/214 (32%), Gaps = 60/214 (28%)
Query: 18 QQQRQQQQPQPESSVSEAPSTPLSSETPKPEENSAVPALSPAAA---PPAPNGPDKMQME 74
Q Q QQP E + P PL+ KP + +P L A PP +GP M
Sbjct: 904 QSALQSQQPPREQPL---PPAPLAMPHIKPPPTTPIPQLPAPQAHKHPPHLSGPSPFSMN 960
Query: 75 SPLLP--------GLSFHQPPQQPPPPQEPAAPGASLSPSFGSTWSTGTTNAVEDSFFQG 126
+ L P LS H PP PPP + P + PS G T +
Sbjct: 961 ANLPPPPALKPLSSLSTHHPPSAHPPPLQ-LMPQSQPLPS-SPAQPPGLTQS-------- 1010
Query: 127 ITPVNGTMLFQNFPHHVNPVFGGTFSPQIGLAQTQHHQQPPPPAPAPQPAQPAQPP---- 182
QN P P T HQ P P A P P PP
Sbjct: 1011 ----------QNLP-----------PPPASHPPTGLHQVAPQPPFAQHPFVPGGPPPITP 1049
Query: 183 -----QAQPPQQRRSPASPSQAPYAQRSAAAAYG 211
+ PP P + +Q P S AAA G
Sbjct: 1050 PTCPSTSTPP---AGPGTSAQPPC---SGAAASG 1077
>gi|112382216 atrophin-1 like protein isoform a [Homo sapiens]
Length = 1566
Score = 57.4 bits (137), Expect = 4e-08
Identities = 85/345 (24%), Positives = 122/345 (35%), Gaps = 46/345 (13%)
Query: 8 DKSKTQPQPQQQQRQQQQP---QPESSVSEAPST--PLSSETPKPEENSAVPALSPAAAP 62
D QQQ Q QP Q + V+ APS+ P + + P P + A+ P +P
Sbjct: 720 DNESDSDSSAQQQMLQAQPPALQAPTGVTPAPSSAPPGTPQLPTPGPTPSATAVPPQGSP 779
Query: 63 PAPNGPDKMQMESPLLPGLSFHQP----PQQPPPPQEP--AAPGASLSPSFGSTWSTGTT 116
A P++ Q + +P Q PQ+PP P P +P L P GS
Sbjct: 780 TASQAPNQPQAPTAPVPHTHIQQAPALHPQRPPSPHPPPHPSPHPPLQPLTGSAGQPSAP 839
Query: 117 NAVEDSFFQGITPVNGTMLFQNFPHHVNPVFGGTFSPQ-------IGLAQTQHHQQPPPP 169
+ + P ++ H P PQ +G + +
Sbjct: 840 SHAQPPLHGQGPPGPHSLQAGPLLQHPGPPQPFGLPPQASQGQAPLGTSPAAAYPHTSLQ 899
Query: 170 APAPQPA-QPAQPPQAQP----PQQRRSPASPSQAPYAQRSAAAAYGHQPIMTSKPSSSS 224
PA Q A Q QPP+ QP P P P Q A A+ H P + S PS S
Sbjct: 900 LPASQSALQSQQPPREQPLPPAPLAMPHIKPPPTTPIPQLPAPQAHKHPPHL-SGPSPFS 958
Query: 225 AVAAAAAAAAASSASSSWNTHQSVNA-------------AWSAPSNPWGGLQAGRDPRRA 271
+ A A SS +TH +A S+P+ P G Q+ P
Sbjct: 959 -MNANLPPPPALKPLSSLSTHHPPSAHPPPLQLMPQSQPLPSSPAQPPGLTQSQNLPPPP 1017
Query: 272 VGVGVGVGVGVPSPLNPISPLKKPFSSNVIAPPKFPRAAPLTSKS 316
P+ L+ ++P + PF+ + P P P T S
Sbjct: 1018 AS-------HPPTGLHQVAP-QPPFAQHPFVPGGPPPITPPTCPS 1054
Score = 41.2 bits (95), Expect = 0.003
Identities = 58/214 (27%), Positives = 70/214 (32%), Gaps = 60/214 (28%)
Query: 18 QQQRQQQQPQPESSVSEAPSTPLSSETPKPEENSAVPALSPAAA---PPAPNGPDKMQME 74
Q Q QQP E + P PL+ KP + +P L A PP +GP M
Sbjct: 904 QSALQSQQPPREQPL---PPAPLAMPHIKPPPTTPIPQLPAPQAHKHPPHLSGPSPFSMN 960
Query: 75 SPLLP--------GLSFHQPPQQPPPPQEPAAPGASLSPSFGSTWSTGTTNAVEDSFFQG 126
+ L P LS H PP PPP + P + PS G T +
Sbjct: 961 ANLPPPPALKPLSSLSTHHPPSAHPPPLQ-LMPQSQPLPS-SPAQPPGLTQS-------- 1010
Query: 127 ITPVNGTMLFQNFPHHVNPVFGGTFSPQIGLAQTQHHQQPPPPAPAPQPAQPAQPP---- 182
QN P P T HQ P P A P P PP
Sbjct: 1011 ----------QNLP-----------PPPASHPPTGLHQVAPQPPFAQHPFVPGGPPPITP 1049
Query: 183 -----QAQPPQQRRSPASPSQAPYAQRSAAAAYG 211
+ PP P + +Q P S AAA G
Sbjct: 1050 PTCPSTSTPP---AGPGTSAQPPC---SGAAASG 1077
>gi|146134388 YLP motif containing 1 [Homo sapiens]
Length = 2146
Score = 57.4 bits (137), Expect = 4e-08
Identities = 68/263 (25%), Positives = 96/263 (36%), Gaps = 43/263 (16%)
Query: 14 PQPQQQQRQQQQPQPESSVSEAPSTPLSS--------------ETPKPEENSAVPALSPA 59
P P + P P S S P+ P SS + + + L P
Sbjct: 20 PPPPPVALPEASPGPGYSSSTTPAAPSSSGFMSFREQHLAQLQQLQQMHQKQMQCVLQPH 79
Query: 60 AAPPAPNGPDKMQMESPLLPGLSFHQPPQQPPPPQEPAAPGASLSPSFGSTWSTGTTNAV 119
PP P P P++PG + QPPPP P PG +LS + +
Sbjct: 80 HLPPPPLPPP------PVMPGGGYGD--WQPPPPPMPPPPGPALSYQKQQQYKHQMLHHQ 131
Query: 120 EDSFFQGITPVNGTMLFQNFPHHVNPVFGGTFSPQIGLAQTQHHQQPPPPAPAPQPAQPA 179
D G+ P+ P PV G++ P +Q + PP P P+ P +
Sbjct: 132 RDGP-PGLVPME-----LESPPESPPVPPGSYMPP-----SQSYMPPPQPPPSYYPPTSS 180
Query: 180 QP--PQAQPPQQRRSPASPSQAPYAQRSAAAAYGHQPIMTSKPSSSSAVAAAAAAAAASS 237
QP P AQP SPSQ+P +Q A + +S S S + ++ AS
Sbjct: 181 QPYLPPAQP--------SPSQSPPSQSYLAPTPSYSSSSSSSQSYLSHSQSYLPSSQASP 232
Query: 238 ASSSWNTHQSVNAAWSAPSNPWG 260
+ S +S A PS P G
Sbjct: 233 SRPSQGHSKSQLLAPPPPSAPPG 255
Score = 50.4 bits (119), Expect = 5e-06
Identities = 62/262 (23%), Positives = 89/262 (33%), Gaps = 30/262 (11%)
Query: 7 MDKSKTQPQPQQQQRQQQQPQPESSVSEAPSTPLSSETPKPEENSAVPALSPAAAPPAPN 66
M +++ Q + Q + Q ++S P S+ P P P L P+ PP
Sbjct: 489 MKATQSYLQEKVNSFQNMKNQYMGNMSMPPPFVPYSQMPPPLPTMPPPVLPPSLPPP--- 545
Query: 67 GPDKMQMESPLLPGLSFHQPPQQPPPPQEPAAPGASLSPSF-GSTWSTGTTNAVEDSFFQ 125
+ P LP PP PPP P+ P + P S S G +
Sbjct: 546 ------VMPPALPATV--PPPGMPPPVMPPSLPTSVPPPGMPPSLSSAGPPPVLPPPSLS 597
Query: 126 GITPVNGTMLFQNFPHHVNPVFGGTFSPQIGLAQTQHHQQPPPPAPAPQPAQPAQPPQAQ 185
P P P T P + PPP P P Q P
Sbjct: 598 SAGPP---------PVLPPPSLSSTAPPPVMPLPPLSSATPPPGIPPPGVPQGIPPQLTA 648
Query: 186 PPQQRRSPASPSQAPYAQRSA----AAAYGHQPIMTSKPSSSSA-----VAAAAAAAAAS 236
P S + SQ P R A ++G P T P SA V + A + ++
Sbjct: 649 APVPPASSSQSSQVPEKPRPALLPTPVSFGSAPPTTYHPPLQSAGPSEQVNSKAPLSKSA 708
Query: 237 SASSSWNTHQSVNAAWSAPSNP 258
SS+++ Q + + +APS P
Sbjct: 709 LPYSSFSSDQGLGESSAAPSQP 730
Score = 50.1 bits (118), Expect = 7e-06
Identities = 61/233 (26%), Positives = 86/233 (36%), Gaps = 54/233 (23%)
Query: 80 GLSFHQPPQQPPPPQEPAAPGASLSPSFGSTWSTGTTNAVEDSFFQGITPVNGTMLFQ-- 137
G S H PP PPP A P AS P + S+ T A S F + L Q
Sbjct: 9 GGSSHYPPPPVPPPPPVALPEASPGPGYS---SSTTPAAPSSSGFMSFREQHLAQLQQLQ 65
Query: 138 ----------NFPHHVNP--------VFGGTFS----------PQIGLA----------- 158
PHH+ P + GG + P G A
Sbjct: 66 QMHQKQMQCVLQPHHLPPPPLPPPPVMPGGGYGDWQPPPPPMPPPPGPALSYQKQQQYKH 125
Query: 159 QTQHHQQPPPPAPAPQ-----PAQPAQPPQA-QPPQQRRSPASPSQAPYAQRSAAAAY-- 210
Q HHQ+ PP P P P PP + PP Q P Y +++ Y
Sbjct: 126 QMLHHQRDGPPGLVPMELESPPESPPVPPGSYMPPSQSYMPPPQPPPSYYPPTSSQPYLP 185
Query: 211 GHQPIMTSKPSSSSAVAAAAAAAAASSASSSWNTHQS--VNAAWSAPSNPWGG 261
QP + P S S +A + +++SS+S S+ +H + ++ ++PS P G
Sbjct: 186 PAQPSPSQSPPSQSYLAPTPSYSSSSSSSQSYLSHSQSYLPSSQASPSRPSQG 238
Score = 39.3 bits (90), Expect = 0.012
Identities = 46/205 (22%), Positives = 69/205 (33%), Gaps = 28/205 (13%)
Query: 18 QQQRQQQQPQPESSVSEAPSTPLSSETPKPEENSAVPALSPAAA---PPAPNGPDKMQME 74
++Q++Q Q + + L + + + S+ P + P PP P G +
Sbjct: 1467 REQKEQLQKMKDFGSEPQMADHLPPQESRLQNTSSRPGMYPPPGSYRPPPPMGKPPGSIV 1526
Query: 75 SPLLPGLSFHQPPQQPPPPQEPAAPGASLSPS----FGSTWSTGTTNAVEDSFFQGITPV 130
P P P +PP P P P L P T + EDSF+ G+
Sbjct: 1527 RPSAPPARSSVPVTRPPVPIPPPPPPPPLPPPPPVIKPQTSAVEQERWDEDSFY-GLWDT 1585
Query: 131 NGTM-LFQNFPHHVNPVFGGTFSPQIGLAQTQHHQQPPPPAPAPQPAQPAQPPQAQPPQQ 189
N L F + P + H PPP P P PP ++PP
Sbjct: 1586 NDEQGLNSEFKSETAAIPSAPVLPPPPV-----HSSIPPPGPVPM----GMPPMSKPPPV 1636
Query: 190 RR----------SPASPSQAPYAQR 204
++ S Q PY +R
Sbjct: 1637 QQTVDYGHGRDISTNKVEQIPYGER 1661
Score = 34.7 bits (78), Expect = 0.31
Identities = 46/215 (21%), Positives = 71/215 (33%), Gaps = 24/215 (11%)
Query: 13 QPQPQQQQRQQQQPQPESSVSEAPSTP----------LSSETPKPEENSAVPALSPAAAP 62
QP P Q Q P S S + S+ L S P S + S AP
Sbjct: 188 QPSPSQSPPSQSYLAPTPSYSSSSSSSQSYLSHSQSYLPSSQASPSRPSQGHSKSQLLAP 247
Query: 63 PAPNGPDKMQ---MESPLLPGLSFHQPPQQPPPPQEPAAPGASLSPSFGSTWSTGTTNAV 119
P P+ P + + PL G QQ P+ P W ++
Sbjct: 248 PPPSAPPGNKTTVQQEPLESGAKNKSTEQQQAAPEPD--PSTMTPQEQQQYWYRQHLLSL 305
Query: 120 EDSFFQGITP-VNGTMLFQNFPHHVNPVFGGTFSPQIGLAQTQHHQQPPPPAPAPQPAQP 178
+ + G ++ ++ P V + Q+ + + PPP P P
Sbjct: 306 QQRTKVHLPGHKKGPVVAKDTPEPVKEEVTVPATSQVPESPSSEEPPLPPPNEEVPPPLP 365
Query: 179 AQPPQAQPPQQRRSPASPSQAPYAQRSAAAAYGHQ 213
+ PQ++ P++ A Q AAAA+ Q
Sbjct: 366 PEEPQSEDPEE--------DARLKQLQAAAAHWQQ 392
Score = 33.9 bits (76), Expect = 0.52
Identities = 40/185 (21%), Positives = 65/185 (35%), Gaps = 31/185 (16%)
Query: 167 PPPAPAPQPAQPAQPPQAQPPQQRRSPASPSQAPYAQRSAAAAYGHQPIMTSKPSSSSAV 226
PPP P P+ P PP S +S P + ++ G P++ SS+A
Sbjct: 556 PPPGMPPPVMPPSLPTSVPPPGMPPSLSSAGPPPVLPPPSLSSAGPPPVLPPPSLSSTAP 615
Query: 227 AAAAAAAAASSASSSWNTHQSVNAAWSAPSNPWGGLQAGRDPRRAVGVGVGVGVGVPSPL 286
SSA+ P P G+ G P+ +P+
Sbjct: 616 PPVMPLPPLSSAT-------------PPPGIPPPGVPQGIPPQLTA-----------APV 651
Query: 287 NPISPL------KKPFSSNVIAPPKFPRAAPLTSKSWMEDNAFRTDNGNNLLPFQDRSRP 340
P S +KP + + P F A P T ++ +A ++ N+ P + P
Sbjct: 652 PPASSSQSSQVPEKPRPALLPTPVSFGSAPPTTYHPPLQ-SAGPSEQVNSKAPLSKSALP 710
Query: 341 YDTFN 345
Y +F+
Sbjct: 711 YSSFS 715
Score = 29.6 bits (65), Expect = 9.9
Identities = 28/99 (28%), Positives = 40/99 (40%), Gaps = 15/99 (15%)
Query: 8 DKSKTQPQPQQQQRQQQ-----QPQPESSVSEAPSTPL-SSETPKP-EENSAVPALSPAA 60
D S PQ QQQ +Q Q + + + P+ + +TP+P +E VPA S
Sbjct: 284 DPSTMTPQEQQQYWYRQHLLSLQQRTKVHLPGHKKGPVVAKDTPEPVKEEVTVPATSQV- 342
Query: 61 APPAPNGPDKMQMESPLLPGLSFHQPPQQPPPPQEPAAP 99
P+ E P LP + PP PP + P
Sbjct: 343 -------PESPSSEEPPLPPPNEEVPPPLPPEEPQSEDP 374
>gi|10863899 numb homolog (Drosophila)-like [Homo sapiens]
Length = 609
Score = 56.6 bits (135), Expect = 8e-08
Identities = 59/186 (31%), Positives = 77/186 (41%), Gaps = 39/186 (20%)
Query: 9 KSKTQPQPQQQQRQQQQPQPESSVSEAPSTPLSSETPKPEENSAVPALSPAAAP-PAPNG 67
K++ Q Q QQQQ+QQQQ Q + + S AP VP + PA P PAP G
Sbjct: 425 KAQQQQQQQQQQQQQQQQQQQQAASVAP----------------VPTMPPALQPFPAPVG 468
Query: 68 P-DKMQMESPLLPGLSFHQPPQQPPPPQEPAAPGASLSPS-----FGSTWSTGTTNAVED 121
P D + ++ PP PP PA PG P G T S NA
Sbjct: 469 PFDAAPAQ------VAVFLPPPHMQPPFVPAYPGLGYPPMPRVPVVGITPSQMVANAFCS 522
Query: 122 SFFQGITPVNGTMLFQ--NFPHHVNPVFGGTFSPQIGLAQTQHHQQPPPPAPAPQPAQPA 179
+ + P T+L + FP P G+ A+ + + P PP PAP PA
Sbjct: 523 A--AQLQPQPATLLGKAGAFPPPAIPSAPGS------QARPRPNGAPWPPEPAPAPAPEL 574
Query: 180 QPPQAQ 185
P +AQ
Sbjct: 575 DPFEAQ 580
Score = 30.4 bits (67), Expect = 5.8
Identities = 63/259 (24%), Positives = 79/259 (30%), Gaps = 47/259 (18%)
Query: 59 AAAPPAPNGPDKMQMESPLLPGLSFHQPPQQPPPPQEPAAPGASLSPSFGSTWSTGTTNA 118
+A PAP P P G S P PP PG +PS W +
Sbjct: 373 SAGAPAPGPP-------PATTGTSAWGEPSVPPAAA--FQPGHKRTPSEAERWLEEVSQV 423
Query: 119 VEDSFFQ------------------GITPVNGTM--LFQNFPHHVNPVFGGTFSPQIGLA 158
+ Q + PV TM Q FP V P + L
Sbjct: 424 AKAQQQQQQQQQQQQQQQQQQQQAASVAPVP-TMPPALQPFPAPVGPFDAAPAQVAVFL- 481
Query: 159 QTQHHQQPPPPAPAPQPAQPAQPPQAQPPQQRRSPASPSQAPYAQRSAAAAYGHQPIMTS 218
PPP P P PA P PP R + + + +A QP
Sbjct: 482 --------PPPHMQP-PFVPAYPGLGYPPMPRVPVVGITPSQMVANAFCSAAQLQP---- 528
Query: 219 KPSSSSAVAAAAAAAAASSASSSWNTHQSVNAAWSAPSNPWGGLQAGRDPRRAVGVGVGV 278
+P++ A A A SA S + A W P P DP A +
Sbjct: 529 QPATLLGKAGAFPPPAIPSAPGSQARPRPNGAPW--PPEPAPAPAPELDPFEAQWAALEG 586
Query: 279 GVGVPSPLNPIS-PLKKPF 296
V P NP S L+K F
Sbjct: 587 KATVEKPSNPFSGDLQKTF 605
>gi|55750053 atrophin-1 [Homo sapiens]
Length = 1190
Score = 56.2 bits (134), Expect = 1e-07
Identities = 99/431 (22%), Positives = 142/431 (32%), Gaps = 102/431 (23%)
Query: 4 DLLMDKSKTQPQPQQQQRQQQQPQPESSVSEAPSTPLSSET---PKPEENSAVPALSPAA 60
D+ D T P + S +S+ P+ P P P+ + P A+
Sbjct: 123 DIDQDNRSTSPSIYSPGSVENDSDSSSGLSQGPARPYHPPPLFPPSPQPPDSTPRQPEAS 182
Query: 61 APPAPNGPDKMQMESPLLPGLS--FHQPPQQPPP----------------PQEPAAPGAS 102
P P+ +P+ P S F PP PPP P P GA+
Sbjct: 183 FEPHPS-VTPTGYHAPMEPPTSRMFQAPPGAPPPHPQLYPGGTGGVLSGPPMGPKGGGAA 241
Query: 103 LS---PSFGSTWSTGTTN-AVEDSFFQGI-------TPVNGTMLFQ-----NFPH----- 141
S P+ G TT +V S G TPV G L NFPH
Sbjct: 242 SSVGGPNGGKQHPPPTTPISVSSSGASGAPPTKPPTTPVGGGNLPSAPPPANFPHVTPNL 301
Query: 142 ----HVNPVFGGTFSPQ-IGLAQTQHHQQPP----------PPAPAPQPAQPAQPPQAQP 186
+ P+ + SP +G H P PP P P A P + P
Sbjct: 302 PPPPALRPLNNASASPPGLGAQPLPGHLPSPHAMGQGMGGLPPGPEKGPTL-APSPHSLP 360
Query: 187 PQQRRSPASPSQAPYAQRSAAAAYGHQPIMTSKPSSSSAVAAAAAAAAASSASSSWNTHQ 246
P +PA P + PY SSS+ ++AAA++++SS+SSS +
Sbjct: 361 PASSSAPAPPMRFPY--------------------SSSSSSSAAASSSSSSSSSSASPFP 400
Query: 247 SVNAAWSAPSN--PWGGLQAGRDPRRAVGVGVGVGVGVPSPLNPISPLKKPFSSNVIAPP 304
+ A S P + P L P P P P + +S PP
Sbjct: 401 ASQALPSYPHSFPPPTSLSVSNQP--------------PKYTQPSLPSQAVWSQGPPPPP 446
Query: 305 KFPRAAPLTSKSWMEDNAFRTDNGNNLLPFQDRSRPYDTFNLHSLENSLMDMIRTDHEPL 364
+ R L + S F G P T + H + + +
Sbjct: 447 PYGR---LLANSNAHPGPFPPSTGAQ----STAHPPVSTHHHHHQQQQQQQQQQQQQQQQ 499
Query: 365 KGKHYPPSGPP 375
+ +H+ SGPP
Sbjct: 500 QQQHHGNSGPP 510
Score = 50.8 bits (120), Expect = 4e-06
Identities = 71/287 (24%), Positives = 98/287 (34%), Gaps = 39/287 (13%)
Query: 13 QPQPQQQQRQQQQPQPESSVSEAPSTPLSSETPKPEENSAVPALSPAAAPPAPNGPDKMQ 72
Q Q QQQQ+QQQQ Q + P P P E + P A P+ +
Sbjct: 484 QQQQQQQQQQQQQQQQQQQHHGNSGPPPPGAFPHPLEGGSSHHAHPYAMSPS------LG 537
Query: 73 MESPLLPGLSFHQPPQQPPPPQE-------PAAPGASLSPSFGSTWSTGTTNAVEDSFFQ 125
P PG P PPP + P P S S + S+ S G+ S Q
Sbjct: 538 SLRPYPPG-----PAHLPPPHSQVSYSQAGPNGPPVSSSSNSSSSTSQGSYPCSHPSPSQ 592
Query: 126 GITPVNGTMLFQNFP------HHVNPVFGGTFSPQIGLAQTQHHQQPPP---PAPAPQPA 176
G P F P ++ V S G +T PPP AP+P
Sbjct: 593 G--PQGAPYPFPPVPTVTTSSATLSTVIATVASSPAGY-KTASPPGPPPYGKRAPSPGAY 649
Query: 177 QPAQPP---QAQPPQQRRSP------ASPSQAPYAQRSAAAAYGHQPIMTSKPSSSSAVA 227
+ A PP PP R SP P + + G P+ + PS ++
Sbjct: 650 KTATPPGYKPGSPPSFRTGTPPGYRGTSPPAGPGTFKPGSPTVGPGPLPPAGPSGLPSLP 709
Query: 228 AAAAAAAASSASSSWNTHQSVNAAWSAPSNPWGGLQAGRDPRRAVGV 274
AA A+ S+ Q + P +P ++ P + V V
Sbjct: 710 PPPAAPASGPPLSATQIKQEPAEEYETPESPVPPARSPSPPPKVVDV 756
Score = 40.8 bits (94), Expect = 0.004
Identities = 55/235 (23%), Positives = 76/235 (32%), Gaps = 41/235 (17%)
Query: 14 PQPQQQQRQQQQ----PQPESSVSEAPSTPLSSETPKPEENSAVPALSPAAAPPAPNGPD 69
P P Q Q P SS + + ST S S P +P PP P
Sbjct: 550 PPPHSQVSYSQAGPNGPPVSSSSNSSSSTSQGSYPCSHPSPSQGPQGAPYPFPPVPTVTT 609
Query: 70 KMQMESPLLP-------GLSFHQPPQQPPPPQEPAAPGA-------SLSPSFGSTWSTGT 115
S ++ G PP PP + +PGA P ++ TGT
Sbjct: 610 SSATLSTVIATVASSPAGYKTASPPGPPPYGKRAPSPGAYKTATPPGYKPGSPPSFRTGT 669
Query: 116 TNAVEDSFFQGITPVNGTMLFQNFPHHVNPVFGGTF---SPQIGLAQTQHHQQPPPPAPA 172
++G +P P GTF SP +G P+
Sbjct: 670 PPG-----YRGTSP---------------PAGPGTFKPGSPTVGPGPLPPAGPSGLPSLP 709
Query: 173 PQPAQPAQPPQAQPPQQRRSPASPSQAPYAQRSAAAAYGHQPIMTSKPSSSSAVA 227
P PA PA P Q ++ PA + P + A + P + PS +S A
Sbjct: 710 PPPAAPASGPPLSATQIKQEPAEEYETPESPVPPARSPSPPPKVVDVPSHASQSA 764
Score = 30.8 bits (68), Expect = 4.4
Identities = 53/225 (23%), Positives = 80/225 (35%), Gaps = 26/225 (11%)
Query: 8 DKSKTQPQPQQQQRQQQQPQPESSVSEAPSTPLSSETPKPEENSAVPALSPAAAPPAPNG 67
+K + + + ++ +R + Q + E PS P E SAV + P P P
Sbjct: 824 EKEREREKERELERSVKLAQEGRAPVECPSLGPVPHRPPFEPGSAVATVPPYLGPDTPAL 883
Query: 68 PDKMQMESP--LLPGLSFHQPPQQPPPPQEPAAPGASLSPSFGSTWST--GTTNAVEDSF 123
+ P + PG H P P +P G ++ + S + A E
Sbjct: 884 RTLSEYARPHVMSPGNRNH-PFYVPLGAVDPGLLGYNVPALYSSDPAAREREREARERDL 942
Query: 124 FQGITPVNGTMLFQNFPHHVNPVFGGTFSPQIGLAQTQHH----QQPPPPAPAPQPAQPA 179
+ P F+ P + P+ G P GL H QP PP P P P+
Sbjct: 943 RDRLKPG-----FEVKPSELEPLHG---VPGPGLDPFPRHGGLALQPGPPGLHPFPFHPS 994
Query: 180 QPP-QAQPPQQRRSPASPSQAPYAQRSAA--------AAYGHQPI 215
P + + PA YA+R AA AA G+ P+
Sbjct: 995 LGPLERERLALAAGPALRPDMSYAERLAAERQHAERVAALGNDPL 1039
>gi|55750041 atrophin-1 [Homo sapiens]
Length = 1190
Score = 56.2 bits (134), Expect = 1e-07
Identities = 99/431 (22%), Positives = 142/431 (32%), Gaps = 102/431 (23%)
Query: 4 DLLMDKSKTQPQPQQQQRQQQQPQPESSVSEAPSTPLSSET---PKPEENSAVPALSPAA 60
D+ D T P + S +S+ P+ P P P+ + P A+
Sbjct: 123 DIDQDNRSTSPSIYSPGSVENDSDSSSGLSQGPARPYHPPPLFPPSPQPPDSTPRQPEAS 182
Query: 61 APPAPNGPDKMQMESPLLPGLS--FHQPPQQPPP----------------PQEPAAPGAS 102
P P+ +P+ P S F PP PPP P P GA+
Sbjct: 183 FEPHPS-VTPTGYHAPMEPPTSRMFQAPPGAPPPHPQLYPGGTGGVLSGPPMGPKGGGAA 241
Query: 103 LS---PSFGSTWSTGTTN-AVEDSFFQGI-------TPVNGTMLFQ-----NFPH----- 141
S P+ G TT +V S G TPV G L NFPH
Sbjct: 242 SSVGGPNGGKQHPPPTTPISVSSSGASGAPPTKPPTTPVGGGNLPSAPPPANFPHVTPNL 301
Query: 142 ----HVNPVFGGTFSPQ-IGLAQTQHHQQPP----------PPAPAPQPAQPAQPPQAQP 186
+ P+ + SP +G H P PP P P A P + P
Sbjct: 302 PPPPALRPLNNASASPPGLGAQPLPGHLPSPHAMGQGMGGLPPGPEKGPTL-APSPHSLP 360
Query: 187 PQQRRSPASPSQAPYAQRSAAAAYGHQPIMTSKPSSSSAVAAAAAAAAASSASSSWNTHQ 246
P +PA P + PY SSS+ ++AAA++++SS+SSS +
Sbjct: 361 PASSSAPAPPMRFPY--------------------SSSSSSSAAASSSSSSSSSSASPFP 400
Query: 247 SVNAAWSAPSN--PWGGLQAGRDPRRAVGVGVGVGVGVPSPLNPISPLKKPFSSNVIAPP 304
+ A S P + P L P P P P + +S PP
Sbjct: 401 ASQALPSYPHSFPPPTSLSVSNQP--------------PKYTQPSLPSQAVWSQGPPPPP 446
Query: 305 KFPRAAPLTSKSWMEDNAFRTDNGNNLLPFQDRSRPYDTFNLHSLENSLMDMIRTDHEPL 364
+ R L + S F G P T + H + + +
Sbjct: 447 PYGR---LLANSNAHPGPFPPSTGAQ----STAHPPVSTHHHHHQQQQQQQQQQQQQQQQ 499
Query: 365 KGKHYPPSGPP 375
+ +H+ SGPP
Sbjct: 500 QQQHHGNSGPP 510
Score = 50.8 bits (120), Expect = 4e-06
Identities = 71/287 (24%), Positives = 98/287 (34%), Gaps = 39/287 (13%)
Query: 13 QPQPQQQQRQQQQPQPESSVSEAPSTPLSSETPKPEENSAVPALSPAAAPPAPNGPDKMQ 72
Q Q QQQQ+QQQQ Q + P P P E + P A P+ +
Sbjct: 484 QQQQQQQQQQQQQQQQQQQHHGNSGPPPPGAFPHPLEGGSSHHAHPYAMSPS------LG 537
Query: 73 MESPLLPGLSFHQPPQQPPPPQE-------PAAPGASLSPSFGSTWSTGTTNAVEDSFFQ 125
P PG P PPP + P P S S + S+ S G+ S Q
Sbjct: 538 SLRPYPPG-----PAHLPPPHSQVSYSQAGPNGPPVSSSSNSSSSTSQGSYPCSHPSPSQ 592
Query: 126 GITPVNGTMLFQNFP------HHVNPVFGGTFSPQIGLAQTQHHQQPPP---PAPAPQPA 176
G P F P ++ V S G +T PPP AP+P
Sbjct: 593 G--PQGAPYPFPPVPTVTTSSATLSTVIATVASSPAGY-KTASPPGPPPYGKRAPSPGAY 649
Query: 177 QPAQPP---QAQPPQQRRSP------ASPSQAPYAQRSAAAAYGHQPIMTSKPSSSSAVA 227
+ A PP PP R SP P + + G P+ + PS ++
Sbjct: 650 KTATPPGYKPGSPPSFRTGTPPGYRGTSPPAGPGTFKPGSPTVGPGPLPPAGPSGLPSLP 709
Query: 228 AAAAAAAASSASSSWNTHQSVNAAWSAPSNPWGGLQAGRDPRRAVGV 274
AA A+ S+ Q + P +P ++ P + V V
Sbjct: 710 PPPAAPASGPPLSATQIKQEPAEEYETPESPVPPARSPSPPPKVVDV 756
Score = 40.8 bits (94), Expect = 0.004
Identities = 55/235 (23%), Positives = 76/235 (32%), Gaps = 41/235 (17%)
Query: 14 PQPQQQQRQQQQ----PQPESSVSEAPSTPLSSETPKPEENSAVPALSPAAAPPAPNGPD 69
P P Q Q P SS + + ST S S P +P PP P
Sbjct: 550 PPPHSQVSYSQAGPNGPPVSSSSNSSSSTSQGSYPCSHPSPSQGPQGAPYPFPPVPTVTT 609
Query: 70 KMQMESPLLP-------GLSFHQPPQQPPPPQEPAAPGA-------SLSPSFGSTWSTGT 115
S ++ G PP PP + +PGA P ++ TGT
Sbjct: 610 SSATLSTVIATVASSPAGYKTASPPGPPPYGKRAPSPGAYKTATPPGYKPGSPPSFRTGT 669
Query: 116 TNAVEDSFFQGITPVNGTMLFQNFPHHVNPVFGGTF---SPQIGLAQTQHHQQPPPPAPA 172
++G +P P GTF SP +G P+
Sbjct: 670 PPG-----YRGTSP---------------PAGPGTFKPGSPTVGPGPLPPAGPSGLPSLP 709
Query: 173 PQPAQPAQPPQAQPPQQRRSPASPSQAPYAQRSAAAAYGHQPIMTSKPSSSSAVA 227
P PA PA P Q ++ PA + P + A + P + PS +S A
Sbjct: 710 PPPAAPASGPPLSATQIKQEPAEEYETPESPVPPARSPSPPPKVVDVPSHASQSA 764
Score = 30.8 bits (68), Expect = 4.4
Identities = 53/225 (23%), Positives = 80/225 (35%), Gaps = 26/225 (11%)
Query: 8 DKSKTQPQPQQQQRQQQQPQPESSVSEAPSTPLSSETPKPEENSAVPALSPAAAPPAPNG 67
+K + + + ++ +R + Q + E PS P E SAV + P P P
Sbjct: 824 EKEREREKERELERSVKLAQEGRAPVECPSLGPVPHRPPFEPGSAVATVPPYLGPDTPAL 883
Query: 68 PDKMQMESP--LLPGLSFHQPPQQPPPPQEPAAPGASLSPSFGSTWST--GTTNAVEDSF 123
+ P + PG H P P +P G ++ + S + A E
Sbjct: 884 RTLSEYARPHVMSPGNRNH-PFYVPLGAVDPGLLGYNVPALYSSDPAAREREREARERDL 942
Query: 124 FQGITPVNGTMLFQNFPHHVNPVFGGTFSPQIGLAQTQHH----QQPPPPAPAPQPAQPA 179
+ P F+ P + P+ G P GL H QP PP P P P+
Sbjct: 943 RDRLKPG-----FEVKPSELEPLHG---VPGPGLDPFPRHGGLALQPGPPGLHPFPFHPS 994
Query: 180 QPP-QAQPPQQRRSPASPSQAPYAQRSAA--------AAYGHQPI 215
P + + PA YA+R AA AA G+ P+
Sbjct: 995 LGPLERERLALAAGPALRPDMSYAERLAAERQHAERVAALGNDPL 1039
>gi|41349482 proline-rich protein BstNI subfamily 1 isoform 1
preproprotein [Homo sapiens]
Length = 331
Score = 56.2 bits (134), Expect = 1e-07
Identities = 74/299 (24%), Positives = 96/299 (32%), Gaps = 26/299 (8%)
Query: 10 SKTQPQPQQQQRQQQQPQPESSVSEAPSTPLSSETPKPEENSAVPALSPAAAP--PAPNG 67
+K Q P + Q P + + P P + P P+ + + SP P P P G
Sbjct: 45 NKPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDKSRSPRSPPGKPQGPPPQG 104
Query: 68 PDKMQMESPLLPGLSFHQPPQQPPPPQEPAAPGASLSPSFGSTWSTGTTNAVEDSFFQGI 127
++ Q P PG PPQ PQ P PG P S + QG
Sbjct: 105 GNQPQGPPPP-PGKPQGPPPQGGNRPQGPPPPGKPQGPPPQGDKSRSPRSPPGKP--QGP 161
Query: 128 TPVNGTMLFQNFPHHVNPVFGGTFSPQIGLAQTQHHQQPPPPAPAPQ--PAQ-------- 177
P G N P P G PQ Q Q PPP PQ P Q
Sbjct: 162 PPQGG-----NQPQGPPPPPG---KPQGPPPQGGKKPQGPPPPGKPQGPPPQGDKSRSSQ 213
Query: 178 -PAQPPQAQPPQQRRSPASPSQAPYAQRSAAAAYGHQPIMTSKPSSSSAVAAAAAAAAAS 236
P PQ PPQ P P P + G++P P A + + S
Sbjct: 214 SPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPAQGGSKSQS 273
Query: 237 SASSSWNTHQSVNAAWSAPSNPWGGLQAGRDPRRAVGVGVGVGVGVPSPLNPISPLKKP 295
+ S + P P AG +P++ G G P P P + P
Sbjct: 274 ARSPPGKPQGPPQQEGNNPQGP--PPPAGGNPQQPQAPPAGQPQGPPRPPQGGRPSRPP 330
Score = 45.8 bits (107), Expect = 1e-04
Identities = 52/176 (29%), Positives = 69/176 (39%), Gaps = 17/176 (9%)
Query: 13 QPQ-PQQQQRQQQQPQPESSVS-EAPSTPLSSETPKPEENSAVPALSPAAAP--PAPNGP 68
QPQ P + Q P P+ + P P + P P+ + + + SP P P P G
Sbjct: 168 QPQGPPPPPGKPQGPPPQGGKKPQGPPPPGKPQGPPPQGDKSRSSQSPPGKPQGPPPQGG 227
Query: 69 DKMQMESPLLPGLSFHQPPQQPPPPQEPAAPGASLSP-SFGSTWSTGTTNAVEDSFFQGI 127
++ Q P PG PPQ PQ P PG P + G + S + QG
Sbjct: 228 NQPQGPPPP-PGKPQGPPPQGGNKPQGPPPPGKPQGPPAQGGSKSQSARSPPGKP--QGP 284
Query: 128 TPVNGTMLFQNFPHHVNPVFGGTFSPQIGLAQTQHHQQPPPPAPAPQPAQPAQPPQ 183
G N P P GG +PQ Q QP P PQ +P++PPQ
Sbjct: 285 PQQEG-----NNPQGPPPPAGG--NPQ--QPQAPPAGQPQGPPRPPQGGRPSRPPQ 331
Score = 30.8 bits (68), Expect = 4.4
Identities = 22/63 (34%), Positives = 25/63 (39%), Gaps = 14/63 (22%)
Query: 152 SPQIGLAQTQHHQQPPPPAPA------------PQPAQPAQPPQAQPPQ--QRRSPASPS 197
+PQ Q + Q PPP P PQ P PQ PPQ + RSP SP
Sbjct: 35 NPQGPSPQGGNKPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDKSRSPRSPP 94
Query: 198 QAP 200
P
Sbjct: 95 GKP 97
>gi|32698936 B-cell CLL/lymphoma 9-like [Homo sapiens]
Length = 1499
Score = 56.2 bits (134), Expect = 1e-07
Identities = 69/269 (25%), Positives = 94/269 (34%), Gaps = 42/269 (15%)
Query: 7 MDKSKTQPQPQQQQRQQQQPQPESSVSEAPSTPLSSETPKP-----EENSAVPALSPAAA 61
+D + P+ ++R + + S E S P S E KP N A PA+ AA
Sbjct: 132 LDSEAKEVAPRSKRRCVLERKQPYSGDEWCSGPDSEEDDKPIGATHNCNVADPAM--AAP 189
Query: 62 PPAPNGPDKMQMESPLLPGLSFHQPPQQPPPPQEPAAPGAS--------LSPS-FGSTWS 112
P ++ + +PG P PPP P APG PS F ++
Sbjct: 190 QLGPGQTTQLPLSESSVPGA-----PHGPPPGLRPDAPGGGGGGGGVPGKPPSQFVYVFT 244
Query: 113 TGTTNAVEDSFFQGITPVNGTMLFQNFPHHV---------NPVFGGTFSPQIGLAQTQHH 163
T N ++ QG QN P P +P G Q+Q
Sbjct: 245 THLANTAAEAVLQGRADSILAYHQQNVPRAKLDQAPKVPPTPEPLPLSTPSAGTPQSQPP 304
Query: 164 QQPPPPAPAPQPAQPAQPPQAQPPQQRRSPASPSQAPYAQRSAAAAYGHQPIMTS----- 218
PPPP PAP A PA PP+ PP+ +P+ A H T+
Sbjct: 305 PLPPPPPPAPGSAPPALPPEG-PPEDSSQDLAPNSVGAASTGGGTGGTHPNTPTATTANN 363
Query: 219 ------KPSSSSAVAAAAAAAAASSASSS 241
PSS+ A AAA + S
Sbjct: 364 PLPPGGDPSSAPGPALLGEAAAPGNGQRS 392
Score = 40.8 bits (94), Expect = 0.004
Identities = 58/233 (24%), Positives = 74/233 (31%), Gaps = 50/233 (21%)
Query: 3 DDLLMDKSKTQPQPQQQQRQQQQPQPESSVSEAPS--TPLSSETPKPEENSAVPALSPAA 60
D +L + P+ + Q + P PE PS TP S P P P +P A
Sbjct: 261 DSILAYHQQNVPRAKLDQAPKVPPTPEPLPLSTPSAGTPQSQPPPLPPPPPPAPGSAPPA 320
Query: 61 APPA----------------------------PNGPDKMQMESPLLPGLSFHQPPQQPPP 92
PP PN P +PL PG P P P
Sbjct: 321 LPPEGPPEDSSQDLAPNSVGAASTGGGTGGTHPNTPTATTANNPLPPG---GDPSSAPGP 377
Query: 93 P--QEPAAPGASLSPSFGSTWSTGTTNAVEDSFFQGITPVNGTMLFQNFPHHVNPVFGGT 150
E AAPG GS + + Q + + +L P G
Sbjct: 378 ALLGEAAAPGNGQRSLVGSEGLSKEQLEHRERSLQTLRDIERLLLRSG---ETEPFLKG- 433
Query: 151 FSPQIGLAQTQHHQQPPPPAPAPQPAQPAQPPQAQPPQQRRSPASPSQAPYAQ 203
P G + PPA AP P P QPP A PP + P Q+ +Q
Sbjct: 434 --PPGGAG------EGGPPAQAPPP--PQQPPTA-PPSGLKKYEEPLQSMISQ 475
Score = 36.6 bits (83), Expect = 0.081
Identities = 50/207 (24%), Positives = 66/207 (31%), Gaps = 28/207 (13%)
Query: 10 SKTQPQPQQQQRQQQQPQPESSVSEAPSTPL---SSETPKPEENSAVPALSPAAAPPAPN 66
S P P Q Q S + STPL + +T ++ +P PP P
Sbjct: 1073 SSPDPTPSQNPLSLMMTQM-SKYAMPSSTPLYHNAIKTIATSDDELLPDRPLLPPPPPPQ 1131
Query: 67 G---------PDKMQM-----ESPL---LPGLS--FHQPPQQPPPPQEPAAPGASLSPSF 107
G P +M + +SP+ LPG H+PP P P L P+
Sbjct: 1132 GSGPGISNSQPSQMHLNSAAAQSPMGMNLPGQQPLSHEPPPAMLPSPTPLGSNIPLHPNA 1191
Query: 108 GSTWSTGTTNAV-----EDSFFQGITPVNGTMLFQNFPHHVNPVFGGTFSPQIGLAQTQH 162
T + + DS PV + FP + G G
Sbjct: 1192 QGTGGPPQNSMMMAPGGPDSLNAPCGPVPSSSQMMPFPPRLQQPHGAMAPTGGGGGGPGL 1251
Query: 163 HQQPPPPAPAPQPAQPAQPPQAQPPQQ 189
Q P P P QPP PPQQ
Sbjct: 1252 QQHYPSGMALPPEDLPNQPPGPMPPQQ 1278
Score = 33.9 bits (76), Expect = 0.52
Identities = 48/204 (23%), Positives = 72/204 (35%), Gaps = 33/204 (16%)
Query: 26 PQPESSVSEAPSTPLSSETPKPEENSAVPALSPAAAPPAPNGP----DKMQMESPLL--- 78
P P S P P + T P +NS + A + AP GP +M P L
Sbjct: 1176 PSPTPLGSNIPLHPNAQGTGGPPQNSMMMAPGGPDSLNAPCGPVPSSSQMMPFPPRLQQP 1235
Query: 79 -------------PGLSFHQPPQQPPPPQE-PAAPGASLSPSFGSTWSTGTTNAVEDSFF 124
PGL H P PP++ P P + P + D++
Sbjct: 1236 HGAMAPTGGGGGGPGLQQHYPSGMALPPEDLPNQPPGPMPPQ-QHLMGKAMAGRMGDAYP 1294
Query: 125 QGITPVNGTMLFQ-NFPHHVNPVFGGTFSPQIGLAQTQHHQQPPPPAPAPQPAQPAQPPQ 183
G+ P ++L + P G P+ L++ ++P P QPP+
Sbjct: 1295 PGVLPGVASVLNDPELSEVIRPTPTGI--PEFDLSRIIPSEKPSSTLQY-FPKSENQPPK 1351
Query: 184 AQPP-------QQRRSPASPSQAP 200
AQPP Q + +PS+ P
Sbjct: 1352 AQPPNLHLMNLQNMMAEQTPSRPP 1375
>gi|61966923 forkhead box B2 [Homo sapiens]
Length = 432
Score = 56.2 bits (134), Expect = 1e-07
Identities = 43/109 (39%), Positives = 51/109 (46%), Gaps = 12/109 (11%)
Query: 141 HHVNPVFGGTFSPQIGLAQTQHHQQPPPPAPAPQPAQPAQPPQAQPPQQRRSPASPSQ-- 198
HH +P P + Q PP AP P P P+QPPQ QPPQQ + P PS
Sbjct: 158 HHHHPPQPPPPPPPPPPHMVHYFHQQPPTAPQPPPHLPSQPPQ-QPPQQSQ-PQQPSHPG 215
Query: 199 --------APYAQRSAAAAYGHQPIMTSKPSSSSAVAAAAAAAAASSAS 239
A A +AAAA G ++ P AAAAAAAAA+S S
Sbjct: 216 KMQEAAAVAAAAAAAAAAAVGSVGRLSQFPPYGLGSAAAAAAAAAASTS 264
Score = 54.3 bits (129), Expect = 4e-07
Identities = 38/91 (41%), Positives = 44/91 (48%), Gaps = 15/91 (16%)
Query: 158 AQTQHHQQPPPPAPAPQPAQP-------AQPPQA-QPPQQRRSPASPSQAPYAQRSAAAA 209
A HH PP P P P P P QPP A QPP P PSQ P Q+ +
Sbjct: 154 AHHHHHHHPPQPPPPPPPPPPHMVHYFHQQPPTAPQPP-----PHLPSQPP--QQPPQQS 206
Query: 210 YGHQPIMTSKPSSSSAVAAAAAAAAASSASS 240
QP K ++AVAAAAAAAAA++ S
Sbjct: 207 QPQQPSHPGKMQEAAAVAAAAAAAAAAAVGS 237
Score = 34.3 bits (77), Expect = 0.40
Identities = 20/53 (37%), Positives = 24/53 (45%), Gaps = 6/53 (11%)
Query: 54 PALSPAAAPPAPNGPDKMQMESPLLPGLSFH---QPPQQPP---PPQEPAAPG 100
P P PP P+ + P P H QPPQQPP PQ+P+ PG
Sbjct: 163 PQPPPPPPPPPPHMVHYFHQQPPTAPQPPPHLPSQPPQQPPQQSQPQQPSHPG 215
>gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo
sapiens]
Length = 816
Score = 55.5 bits (132), Expect = 2e-07
Identities = 81/304 (26%), Positives = 111/304 (36%), Gaps = 49/304 (16%)
Query: 8 DKSKTQPQPQQQQRQQQQPQPESSVSEAPSTPLSSETPKPEENSAVPALSPAAAPPAPNG 67
+ S T+P P ++R P + S LSS SA P SPA + P+ G
Sbjct: 205 EHSTTEPSPAARRR----PSAGGGLQRPASRSLSS--------SATPLSSPARSGPSARG 252
Query: 68 PDK--MQMESPLLPGLSFHQPPQQPPPPQEPAAPGASLSPSFGSTWSTGTTNAVEDSFFQ 125
+ P GL +PP Q PP++ AAP +L P S +T + +A
Sbjct: 253 TPRAPAHPSQPKPKGLQALRPP-QVTPPRKDAAP--ALGPLSSSPLATPSPSAPPSP--- 306
Query: 126 GITPVNGTMLFQNFPH-HVNPVFGGTFSPQIGLAQTQHHQQPPPP-APAPQPAQPAQPPQ 183
+ Q P P T S Q H P PP +P P A P
Sbjct: 307 -----SAPPSLQTLPSPPATPPSQATTSLGSPTLQATHSFLPSPPLSPLATPPPQAPPAL 361
Query: 184 AQPPQQRRSPASPSQAPYAQRSAAAAYGHQPIMTSKPSSSSAVAAAAAAAAASSASSSWN 243
A PP Q +P SP +P P+ T P + +A+A A S S
Sbjct: 362 ALPPLQ--APPSPPASPPL----------SPLATPSPQAPNALAVHLLQAPFSPPPS--- 406
Query: 244 THQSVNAAWSAPSNPWGGLQAGRDPRRAVGVGVGVGVGVPSPLNPISPLKKPFSSNVIAP 303
V A +S P++P A P +A + VP P P P S + P
Sbjct: 407 --PPVQAPFSPPASPPVSPSA-TPPSQAPPSLAAPPLQVP----PSPPASPPMSPSATPP 459
Query: 304 PKFP 307
P+ P
Sbjct: 460 PQAP 463
Score = 55.5 bits (132), Expect = 2e-07
Identities = 71/243 (29%), Positives = 90/243 (37%), Gaps = 42/243 (17%)
Query: 16 PQQQQRQQQQPQPESSVSEAPSTPLSSETPKPEENSAVPALSPAAAPPAPNGP---DKMQ 72
P Q P +++ S PS PLS P + AL P APP+P +
Sbjct: 323 PSQATTSLGSPTLQATHSFLPSPPLSPLATPPPQAPPALALPPLQAPPSPPASPPLSPLA 382
Query: 73 MESPLLP-GLSFH--QPPQQPPPP---QEPAAPGAS--LSPSFGSTWSTGTTNAVEDSFF 124
SP P L+ H Q P PPP Q P +P AS +SPS
Sbjct: 383 TPSPQAPNALAVHLLQAPFSPPPSPPVQAPFSPPASPPVSPS------------------ 424
Query: 125 QGITPVNGTMLFQNFPHHVNPVFGGTFSPQIGLAQTQHHQQPPPPAPAP----QPAQPAQ 180
P P V P SP + + T Q PPP A P +P A
Sbjct: 425 -ATPPSQAPPSLAAPPLQVPP--SPPASPPMSPSATPPPQAPPPLAAPPLQLAKPPPQAP 481
Query: 181 PPQAQPPQQR--RSPAS-PSQAPYAQRSAAAAYGHQPIMTSKPSSSSAVAAAAAAAAASS 237
P A PP Q PAS P QAP+ S +A+ P+ T P + +AA S
Sbjct: 482 PALATPPLQALPSPPASFPGQAPF---SPSASLPMSPLATPPPQAPPVLAAPLLQVPPSP 538
Query: 238 ASS 240
+S
Sbjct: 539 PAS 541
Score = 49.3 bits (116), Expect = 1e-05
Identities = 65/246 (26%), Positives = 84/246 (34%), Gaps = 26/246 (10%)
Query: 34 EAP-STPLSSETPKPEENSAVPALSPAAAPP--APNGPDKMQMESPLLPGLSFHQPPQQP 90
+AP S P S P A P +SP+A PP AP ++ P P S P
Sbjct: 398 QAPFSPPPSPPVQAPFSPPASPPVSPSATPPSQAPPSLAAPPLQVPPSPPASPPMSPSAT 457
Query: 91 PPPQEP---AAPGASLS---PSFGSTWSTGTTNAVED--SFFQGITPVNGTMLFQNFPHH 142
PPPQ P AAP L+ P +T A+ + F G P + + P
Sbjct: 458 PPPQAPPPLAAPPLQLAKPPPQAPPALATPPLQALPSPPASFPGQAPFSPSASLPMSPLA 517
Query: 143 VNPVFGGTFSPQIGLAQTQHHQQPPPPA----------PAPQPAQPAQPPQAQPPQQRRS 192
P +P + LA P PPA P P P P+
Sbjct: 518 TPP----PQAPPV-LAAPLLQVPPSPPASPTLQAPRRPPTPGPDTSVSGPRLTLALAPGP 572
Query: 193 PASPSQAPYAQRSAAAAYGHQPIMTSKPSSSSAVAAAAAAAAASSASSSWNTHQSVNAAW 252
P PS++P + S GH TS P + AA+S AAW
Sbjct: 573 PPPPSRSPSSTLSGPDLAGHSSSATSTPEELRGYDSGPEGGAAASPPPDAELAACHPAAW 632
Query: 253 SAPSNP 258
S P
Sbjct: 633 SRGPAP 638
Score = 44.7 bits (104), Expect = 3e-04
Identities = 72/276 (26%), Positives = 108/276 (39%), Gaps = 30/276 (10%)
Query: 55 ALSPAAAPPAPNGPDKMQMESPLLPGLSFHQPPQQPPPPQEPAAPG-ASLSPSFGSTWST 113
A P +AP A GP + P G PP + P ++PG AS + G
Sbjct: 68 ATIPESAPRA--GPTRTSR--PPASGRGERAPPAKNTSPGPVSSPGRASGTTRPGPLGQK 123
Query: 114 GTTNAVEDSFFQG--ITPVNGTMLFQNFPHHVNPVFGGTFSPQIGLAQTQHHQQP--PPP 169
G + E++ +G + L + GT SP + + P P
Sbjct: 124 GLRISAEETVARGKATEAPKRSALSAGARRDTSGPTPGTPSPAMARRSRAAGTEVGLPRP 183
Query: 170 APAPQPAQPAQ-PPQAQPPQQRRSPASPSQAPYAQRSAAAAYGHQPIMTSKPSSSSAVAA 228
AP+ +P P + P ++ S PS P A+R +A G Q +P+S S
Sbjct: 184 APSARPRPPTEGPRKSVSSASEHSTTEPS--PAARRRPSAGGGLQ-----RPASRS---L 233
Query: 229 AAAAAAASSASSSWNTHQSVNAAWSAPSNPW-GGLQAGRDPR---------RAVGVGVGV 278
+++A SS + S + + A + PS P GLQA R P+ A+G
Sbjct: 234 SSSATPLSSPARSGPSARGTPRAPAHPSQPKPKGLQALRPPQVTPPRKDAAPALGPLSSS 293
Query: 279 GVGVPSPLNPISPLKKPFSSNVIAPPKFPRAAPLTS 314
+ PSP P SP P + +PP P + TS
Sbjct: 294 PLATPSPSAPPSPSAPPSLQTLPSPPATPPSQATTS 329
Score = 40.0 bits (92), Expect = 0.007
Identities = 57/229 (24%), Positives = 77/229 (33%), Gaps = 41/229 (17%)
Query: 28 PESSVSEAPSTPLSSETPKPEENSAVPALSPAAAPPAPNGPDKMQMESPLLPG------- 80
P S + P +PL++ P+ A P L +PPA P P PG
Sbjct: 504 PFSPSASLPMSPLATPPPQAPPVLAAPLLQVPPSPPA--SPTLQAPRRPPTPGPDTSVSG 561
Query: 81 --LSFHQPPQQPPPPQEPAAPGASLSPSFGSTWSTGTTNAVEDSFFQGITPVNGTMLFQN 138
L+ P PPPP +P ++LS + S+ T+ E+ + G
Sbjct: 562 PRLTLALAPGPPPPPSR--SPSSTLSGPDLAGHSSSATSTPEE--------LRG------ 605
Query: 139 FPHHVNPVFGGTFSPQIGLAQTQHHQQPPPPAPAPQPAQPAQPPQAQPPQQRRSPASP-- 196
+ P G SP H PAP A P P P S
Sbjct: 606 --YDSGPEGGAAASPPPDAELAACHPAAWSRGPAPPLAFRGAPGAPLPWPPATGPGSADG 663
Query: 197 ------SQAPYAQRSAAAAYGHQPIMTSKPSSSSAVAAAAAAAAASSAS 239
++ P + A A P P +S AAA A A ASS S
Sbjct: 664 LCTIYETEGPESATPAPGALDPGP----SPGTSGGKAAAGAGAGASSRS 708
Score = 39.7 bits (91), Expect = 0.010
Identities = 67/304 (22%), Positives = 105/304 (34%), Gaps = 44/304 (14%)
Query: 26 PQPESSVSEAPST--PLSSETPKPEENSAVPALSPAAAPPAPNGPDKMQMESPLLPGLSF 83
P+P S P T P S + E ++ P+ + P A G ++ P LS
Sbjct: 181 PRPAPSARPRPPTEGPRKSVSSASEHSTTEPSPAARRRPSAGGG-----LQRPASRSLSS 235
Query: 84 HQPPQQPPPPQEPAAPGASLSPSFGSTWSTGTTNAVEDSFFQGITPVNGTMLFQNFPHHV 143
P P P+A G +P+ S + Q + P T ++ +
Sbjct: 236 SATPLSSPARSGPSARGTPRAPAHPSQ--------PKPKGLQALRPPQVTPPRKDAAPAL 287
Query: 144 NPVFGGTFSPQIGLAQTQHHQQPPPPAPAPQ----PAQPAQPP------------QAQPP 187
P+ + T PP P+ P P+ PA PP QA
Sbjct: 288 GPLSSSPLA-------TPSPSAPPSPSAPPSLQTLPSPPATPPSQATTSLGSPTLQATHS 340
Query: 188 QQRRSPASPSQAPYAQRSAAAAYGHQPIMTSKPSSSSAVAAAAAAAAASSASSSWNTHQS 247
P SP P Q A A P + + PS ++ + A + A ++ H
Sbjct: 341 FLPSPPLSPLATPPPQAPPALAL---PPLQAPPSPPASPPLSPLATPSPQAPNALAVH-L 396
Query: 248 VNAAWSAPSNPWGGLQAGRDPRRAVGVGVGVGVGVPSPLNPISPLKKPFSSNVIAPPKFP 307
+ A +S P +P +QA P + V +P + +P + S +PP P
Sbjct: 397 LQAPFSPPPSP--PVQAPFSPPASPPVSPSATPPSQAPPSLAAPPLQVPPSPPASPPMSP 454
Query: 308 RAAP 311
A P
Sbjct: 455 SATP 458
Score = 37.0 bits (84), Expect = 0.062
Identities = 72/301 (23%), Positives = 105/301 (34%), Gaps = 32/301 (10%)
Query: 31 SVSEAPSTPLSSETPKPEENSAVPALSPAAAPPAPNGPDKMQMESPLLPGLSFHQPPQQP 90
S E + ++E PK SA + P P P G P P
Sbjct: 128 SAEETVARGKATEAPKRSALSAGARRDTSG--PTPGTPSPAMARRSRAAGTEVGLPRPAP 185
Query: 91 PPPQEPAAPGASLSPSFGSTWSTGTTNAVEDSFFQGITPVNGTMLFQNFPHHVNPVFGGT 150
P G S S S ST E S P G L + ++
Sbjct: 186 SARPRPPTEGPRKSVSSASEHST-----TEPSPAARRRPSAGGGLQRPASRSLSSSATPL 240
Query: 151 FSPQIGLAQTQHHQQPP--PPAPAPQPAQPAQPPQAQPPQQRRSPA--SPSQAPYAQRSA 206
SP + + P P P P+ Q +PPQ PP++ +PA S +P A S
Sbjct: 241 SSPARSGPSARGTPRAPAHPSQPKPKGLQALRPPQVTPPRKDAAPALGPLSSSPLATPSP 300
Query: 207 AAAYGHQPIMTSKPSSSSAVAAAAAAAAASSASSSWNTHQSVNAAWSAPSNPWGGLQAGR 266
+A P ++ PS + + A + ++ S T Q+ ++ PS P L A
Sbjct: 301 SA----PPSPSAPPSLQTLPSPPATPPSQATTSLGSPTLQATHS--FLPSPPLSPL-ATP 353
Query: 267 DPRRAVGVGVGVGVGVPSP--LNPISPL--KKPFSSNVIA----------PPKFPRAAPL 312
P+ + + PSP P+SPL P + N +A PP P AP
Sbjct: 354 PPQAPPALALPPLQAPPSPPASPPLSPLATPSPQAPNALAVHLLQAPFSPPPSPPVQAPF 413
Query: 313 T 313
+
Sbjct: 414 S 414
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.132 0.413
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,659,206
Number of Sequences: 37866
Number of extensions: 2207721
Number of successful extensions: 52616
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 745
Number of HSP's successfully gapped in prelim test: 1656
Number of HSP's that attempted gapping in prelim test: 21142
Number of HSP's gapped (non-prelim): 17789
length of query: 698
length of database: 18,247,518
effective HSP length: 109
effective length of query: 589
effective length of database: 14,120,124
effective search space: 8316753036
effective search space used: 8316753036
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 65 (29.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.