Guide to the Human Genome
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Name: CPEB1 Sequence: fasta or formatted (486aa) NCBI GI: 119395720
Description:

cytoplasmic polyadenylation element binding protein 1 isoform 3

Referenced in:

Polyadenylation
Translation Factors

Other entries for this name:
alt prot [491aa] cytoplasmic polyadenylation element binding protein 1 isoform 2
alt mRNA [486aa] cytoplasmic polyadenylation element binding protein 1 isoform 3
alt prot [561aa] cytoplasmic polyadenylation element binding protein 1 isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.8         28           3
 C cysteine            2.5         12           1
 D aspartate           6.4         31           1
 E glutamate           3.3         16           1
 F phenylalanine       4.3         21           2
 G glycine             6.8         33           3
 H histidine           2.7         13           2
 I isoleucine          2.7         13           1
 K lysine              4.5         22           2
 L leucine            10.5         51           2
 M methionine          1.9          9           1
 N asparagine          2.9         14           2
 P proline             8.4         41           2
 Q glutamine           3.3         16           1
 R arginine            6.4         31           2
 S serine             13.6         66           3
 T threonine           3.7         18           2
 V valine              6.0         29           2
 W tryptophan          2.3         11           1
 Y tyrosine            2.3         11           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   cytoplasmic polyadenylation element binding protein... 
CPEB1                 1.000   cytoplasmic polyadenylation element binding protein...
CPEB1                 1.000   cytoplasmic polyadenylation element binding protein...
CPEB1                 0.994   cytoplasmic polyadenylation element binding protein...
CPEB3                 0.193   cytoplasmic polyadenylation element binding protein ...
CPEB4                 0.193   cytoplasmic polyadenylation element binding protein...
CPEB2                 0.193   cytoplasmic polyadenylation element binding protein ...
CPEB2                 0.193   cytoplasmic polyadenylation element binding protein ...
DAZAP1                0.012   DAZ associated protein 1 isoform a 
DAZAP1                0.012   DAZ associated protein 1 isoform b 
MSI1                  0.009   musashi 1 
KIAA1109              0.009   fragile site-associated protein 
EIF4B                 0.009   eukaryotic translation initiation factor 4B 
SRRM2                 0.009   splicing coactivator subunit SRm300 
RBM46                 0.008   RNA binding motif protein 46 
RBMX2                 0.008   RNA binding motif protein, X-linked 2 
COCH                  0.008   cochlin precursor 
COCH                  0.008   cochlin precursor 
RBM47                 0.008   RNA binding motif protein 47 isoform a 
RBM47                 0.008   RNA binding motif protein 47 isoform b 
APC2                  0.008   adenomatosis polyposis coli 2 
C10orf12              0.007   hypothetical protein LOC26148 
HNRNPAB               0.007   heterogeneous nuclear ribonucleoprotein A/B isoform ...
HNRNPAB               0.007   heterogeneous nuclear ribonucleoprotein A/B isoform ...
HNRPDL                0.007   heterogeneous nuclear ribonucleoprotein D-like [Homo...
DOCK3                 0.007   dedicator of cytokinesis 3 
ZNF358                0.007   zinc finger protein 358 
TH                    0.007   tyrosine hydroxylase isoform c 
SNRNP70               0.007   U1 small nuclear ribonucleoprotein 70 kDa 
CRIPT                 0.007   postsynaptic protein CRIPT 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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