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Search of human proteins with 50345292
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|50345292 hematological and neurological expressed 1 isoform
3 [Homo sapiens]
(108 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|50345292 hematological and neurological expressed 1 isoform 3... 218 6e-58
gi|7705877 hematological and neurological expressed 1 isoform 1 ... 218 6e-58
gi|50345294 hematological and neurological expressed 1 isoform 2... 106 4e-24
gi|33356170 myosin IXB isoform 1 [Homo sapiens] 38 0.002
gi|209977080 REST corepressor 3 isoform a [Homo sapiens] 35 0.017
gi|8922733 REST corepressor 3 isoform d [Homo sapiens] 35 0.017
gi|124430752 kinesin family member 26B [Homo sapiens] 35 0.017
gi|122937251 lysine (K)-specific demethylase 6B [Homo sapiens] 34 0.022
gi|32698752 hypothetical protein LOC63939 [Homo sapiens] 34 0.029
gi|55741677 SET domain containing 1A [Homo sapiens] 33 0.038
gi|40789265 beta 1,4-N-acetylgalactosaminyltransferase-transfera... 33 0.038
gi|154354972 phosphatase and actin regulator 2 isoform 4 [Homo s... 33 0.049
gi|154354974 phosphatase and actin regulator 2 isoform 3 [Homo s... 33 0.049
gi|154354970 phosphatase and actin regulator 2 isoform 2 [Homo s... 33 0.049
gi|154354968 phosphatase and actin regulator 2 isoform 1 [Homo s... 33 0.049
gi|115392133 collagen, type XXIV, alpha 1 [Homo sapiens] 33 0.049
gi|5729790 CCCTC-binding factor [Homo sapiens] 33 0.065
gi|169658378 trinucleotide repeat containing 18 [Homo sapiens] 33 0.065
gi|19923748 dihydrolipoamide S-succinyltransferase (E2 component... 33 0.065
gi|50053795 eukaryotic translation initiation factor 4B [Homo sa... 32 0.084
gi|149158690 HLA-B associated transcript-2 [Homo sapiens] 32 0.084
gi|47132519 Ras association and pleckstrin homology domains 1 is... 32 0.084
gi|14589876 embryonal Fyn-associated substrate isoform 2 [Homo s... 32 0.084
gi|5031681 embryonal Fyn-associated substrate isoform 1 [Homo sa... 32 0.084
gi|148806902 TBC1 domain family, member 12 [Homo sapiens] 32 0.11
gi|21536320 heterogeneous nuclear ribonucleoprotein U-like 1 iso... 32 0.11
gi|21536326 heterogeneous nuclear ribonucleoprotein U-like 1 iso... 32 0.11
gi|149393140 hypothetical protein LOC84067 isoform 1 [Homo sapiens] 32 0.11
gi|45120115 hypothetical protein LOC56905 [Homo sapiens] 32 0.11
gi|150378449 X-ray radiation resistance associated 1 [Homo sapiens] 32 0.11
>gi|50345292 hematological and neurological expressed 1 isoform 3
[Homo sapiens]
Length = 108
Score = 218 bits (556), Expect = 6e-58
Identities = 108/108 (100%), Positives = 108/108 (100%)
Query: 1 MASNIFGTPEENQASWAKSAGAKSSGGREDLESSGLQRRNSSEASSGDFLDLKGEGDIHE 60
MASNIFGTPEENQASWAKSAGAKSSGGREDLESSGLQRRNSSEASSGDFLDLKGEGDIHE
Sbjct: 1 MASNIFGTPEENQASWAKSAGAKSSGGREDLESSGLQRRNSSEASSGDFLDLKGEGDIHE 60
Query: 61 NVDTDLPGSLGQSEEKPVPAAPVPSPVAPAPVPSRRNPPGGKSSLVLG 108
NVDTDLPGSLGQSEEKPVPAAPVPSPVAPAPVPSRRNPPGGKSSLVLG
Sbjct: 61 NVDTDLPGSLGQSEEKPVPAAPVPSPVAPAPVPSRRNPPGGKSSLVLG 108
>gi|7705877 hematological and neurological expressed 1 isoform 1
[Homo sapiens]
Length = 154
Score = 218 bits (556), Expect = 6e-58
Identities = 108/108 (100%), Positives = 108/108 (100%)
Query: 1 MASNIFGTPEENQASWAKSAGAKSSGGREDLESSGLQRRNSSEASSGDFLDLKGEGDIHE 60
MASNIFGTPEENQASWAKSAGAKSSGGREDLESSGLQRRNSSEASSGDFLDLKGEGDIHE
Sbjct: 47 MASNIFGTPEENQASWAKSAGAKSSGGREDLESSGLQRRNSSEASSGDFLDLKGEGDIHE 106
Query: 61 NVDTDLPGSLGQSEEKPVPAAPVPSPVAPAPVPSRRNPPGGKSSLVLG 108
NVDTDLPGSLGQSEEKPVPAAPVPSPVAPAPVPSRRNPPGGKSSLVLG
Sbjct: 107 NVDTDLPGSLGQSEEKPVPAAPVPSPVAPAPVPSRRNPPGGKSSLVLG 154
>gi|50345294 hematological and neurological expressed 1 isoform 2
[Homo sapiens]
Length = 181
Score = 106 bits (265), Expect = 4e-24
Identities = 53/53 (100%), Positives = 53/53 (100%)
Query: 1 MASNIFGTPEENQASWAKSAGAKSSGGREDLESSGLQRRNSSEASSGDFLDLK 53
MASNIFGTPEENQASWAKSAGAKSSGGREDLESSGLQRRNSSEASSGDFLDLK
Sbjct: 47 MASNIFGTPEENQASWAKSAGAKSSGGREDLESSGLQRRNSSEASSGDFLDLK 99
>gi|33356170 myosin IXB isoform 1 [Homo sapiens]
Length = 2157
Score = 38.1 bits (87), Expect = 0.002
Identities = 28/97 (28%), Positives = 41/97 (42%), Gaps = 15/97 (15%)
Query: 23 KSSGGREDLESSGLQRRNSSEASSGDFL-----DLKGEGDIHENVDTDLPGSL------- 70
+++GG ED E L R S + + +L G EN+D++ S
Sbjct: 1953 EAAGGDEDREKEILIERIQSIKEEKEDITYRLPELDPRGSDEENLDSETSASTESLLEER 2012
Query: 71 ---GQSEEKPVPAAPVPSPVAPAPVPSRRNPPGGKSS 104
G SE P PA P P P+P+P+ PP + S
Sbjct: 2013 AGRGASEGPPAPALPCPGAPTPSPLPTVAAPPRRRPS 2049
>gi|209977080 REST corepressor 3 isoform a [Homo sapiens]
Length = 553
Score = 34.7 bits (78), Expect = 0.017
Identities = 25/90 (27%), Positives = 38/90 (42%), Gaps = 12/90 (13%)
Query: 10 EENQASWAKSAGAKSSGGREDLESSGLQRRNSSEASSGDFLDLKGEGDIHENVDTDLPGS 69
EE W G ++S G D + G + +++S SG D + E + P +
Sbjct: 396 EEVLQEWEAEQGTQASNG--DASTLGEETKSASNVPSGKSTDEEEEAQTPQ-----APRT 448
Query: 70 LGQSEEKPVPAAPVPSPVAPAPVPSRRNPP 99
LG P P AP +P AP+ + PP
Sbjct: 449 LG-----PSPPAPSSTPTPTAPIATLNQPP 473
>gi|8922733 REST corepressor 3 isoform d [Homo sapiens]
Length = 495
Score = 34.7 bits (78), Expect = 0.017
Identities = 25/90 (27%), Positives = 38/90 (42%), Gaps = 12/90 (13%)
Query: 10 EENQASWAKSAGAKSSGGREDLESSGLQRRNSSEASSGDFLDLKGEGDIHENVDTDLPGS 69
EE W G ++S G D + G + +++S SG D + E + P +
Sbjct: 338 EEVLQEWEAEQGTQASNG--DASTLGEETKSASNVPSGKSTDEEEEAQTPQ-----APRT 390
Query: 70 LGQSEEKPVPAAPVPSPVAPAPVPSRRNPP 99
LG P P AP +P AP+ + PP
Sbjct: 391 LG-----PSPPAPSSTPTPTAPIATLNQPP 415
>gi|124430752 kinesin family member 26B [Homo sapiens]
Length = 2108
Score = 34.7 bits (78), Expect = 0.017
Identities = 22/60 (36%), Positives = 26/60 (43%), Gaps = 3/60 (5%)
Query: 37 QRRNSSEASSGDFLDLKGEGDIHENVDTDLPGSLGQSEEKPVPAAP---VPSPVAPAPVP 93
Q +S S D D EG + +LP S Q PVPAA PSP +P VP
Sbjct: 967 QAAGASPLSESDKEDNGSEGQLTNREGPELPASKMQRSHSPVPAAAPAHSPSPASPRSVP 1026
>gi|122937251 lysine (K)-specific demethylase 6B [Homo sapiens]
Length = 1682
Score = 34.3 bits (77), Expect = 0.022
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 72 QSEEKPVPAAPVPSPVAPAPVPSRRNPP 99
+ E+KP PA P P P+A P PS+ PP
Sbjct: 766 EEEKKPPPALPPPPPLAKFPPPSQPQPP 793
>gi|32698752 hypothetical protein LOC63939 [Homo sapiens]
Length = 383
Score = 33.9 bits (76), Expect = 0.029
Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 6/65 (9%)
Query: 28 REDLESSGLQRRNS----SEASSGD--FLDLKGEGDIHENVDTDLPGSLGQSEEKPVPAA 81
+E + ++RN + +SG+ FLD + I EN D D L SE P+P +
Sbjct: 49 KESISPEARRKRNPLGSRCQGASGNKLFLDFQSMKIIKENADEDSASDLSDSERIPIPPS 108
Query: 82 PVPSP 86
P+ P
Sbjct: 109 PLTPP 113
>gi|55741677 SET domain containing 1A [Homo sapiens]
Length = 1707
Score = 33.5 bits (75), Expect = 0.038
Identities = 27/95 (28%), Positives = 38/95 (40%), Gaps = 7/95 (7%)
Query: 7 GTPEENQAS-----WAKSAGAKSSGGREDLESSGLQRRNSSEASSGDFLDLKGEGDIHEN 61
G EE+ +S +A S G S + SS +SS +SS E +
Sbjct: 1006 GEDEESDSSSKCSLYADSDGENDSTSDSESSSSSSSSSSSSSSSSSSSSSSSSESSSEDE 1065
Query: 62 VDTDLPGSLGQSEEKPVPAAPVPSPV-APAPVPSR 95
+ + P +L S P PVP+P PVP R
Sbjct: 1066 EEEERPAAL-PSASPPPREVPVPTPAPVEVPVPER 1099
Score = 28.9 bits (63), Expect = 0.93
Identities = 26/92 (28%), Positives = 37/92 (40%), Gaps = 19/92 (20%)
Query: 17 AKSAGAKSSGGREDLESSGLQRRNSSEASSGDFLDLKGEGDIHENVDTDLPGSLGQSEEK 76
A + + RE +++G + +S SSGD +++ D D GS
Sbjct: 552 APTGSGEPGATRESPKANG--QNQASPCSSGDDMEIS---------DDDRGGS------- 593
Query: 77 PVPAAPVPSPVAPAPVPSRRNPPGGKSSLVLG 108
P AP P P P P PP +SL LG
Sbjct: 594 -PPPAPTPPQQPPPPPPPPPPPPPYLASLPLG 624
>gi|40789265 beta 1,4-N-acetylgalactosaminyltransferase-transferase
4 [Homo sapiens]
Length = 1039
Score = 33.5 bits (75), Expect = 0.038
Identities = 23/75 (30%), Positives = 33/75 (44%), Gaps = 2/75 (2%)
Query: 27 GREDLESSGLQRRNSSEASSGDFLDLKGEGDIHENVDTDLPGSLGQSEEKPVPAAPV-PS 85
G ED E +QRR + DFLD + EG++ ++++ + P PAAP P
Sbjct: 413 GDED-EEDEVQRRAFLFLNPDDFLDDEDEGELLDSLEPTEAAPPRSGPQSPAPAAPAQPG 471
Query: 86 PVAPAPVPSRRNPPG 100
P P R G
Sbjct: 472 ATLAPPTPPRPRDGG 486
>gi|154354972 phosphatase and actin regulator 2 isoform 4 [Homo
sapiens]
Length = 554
Score = 33.1 bits (74), Expect = 0.049
Identities = 27/102 (26%), Positives = 48/102 (47%), Gaps = 12/102 (11%)
Query: 3 SNIFGTPEENQASWAKSAGAK-SSGGREDLESSGLQRRNSSEASSGDFLDLKGEGDIHE- 60
S+ P+ ++ + + AG ++ G+ + + SS+ ++ DLKGE
Sbjct: 161 SSTSSRPKASKETVSSKAGTVGTTKGKRKTDKQPITSHLSSDTTTSGTSDLKGEPAETRV 220
Query: 61 ---NVDTDLPGSLGQSEEK------PVPAAPVPSPVAPAPVP 93
++ +PG+ Q+ K P P AP PSP+AP P+P
Sbjct: 221 ESFKLEQTVPGAEEQNTGKFKSMVPPPPVAPAPSPLAP-PLP 261
>gi|154354974 phosphatase and actin regulator 2 isoform 3 [Homo
sapiens]
Length = 634
Score = 33.1 bits (74), Expect = 0.049
Identities = 27/102 (26%), Positives = 48/102 (47%), Gaps = 12/102 (11%)
Query: 3 SNIFGTPEENQASWAKSAGAK-SSGGREDLESSGLQRRNSSEASSGDFLDLKGEGDIHE- 60
S+ P+ ++ + + AG ++ G+ + + SS+ ++ DLKGE
Sbjct: 241 SSTSSRPKASKETVSSKAGTVGTTKGKRKTDKQPITSHLSSDTTTSGTSDLKGEPAETRV 300
Query: 61 ---NVDTDLPGSLGQSEEK------PVPAAPVPSPVAPAPVP 93
++ +PG+ Q+ K P P AP PSP+AP P+P
Sbjct: 301 ESFKLEQTVPGAEEQNTGKFKSMVPPPPVAPAPSPLAP-PLP 341
>gi|154354970 phosphatase and actin regulator 2 isoform 2 [Homo
sapiens]
Length = 565
Score = 33.1 bits (74), Expect = 0.049
Identities = 27/102 (26%), Positives = 48/102 (47%), Gaps = 12/102 (11%)
Query: 3 SNIFGTPEENQASWAKSAGAK-SSGGREDLESSGLQRRNSSEASSGDFLDLKGEGDIHE- 60
S+ P+ ++ + + AG ++ G+ + + SS+ ++ DLKGE
Sbjct: 172 SSTSSRPKASKETVSSKAGTVGTTKGKRKTDKQPITSHLSSDTTTSGTSDLKGEPAETRV 231
Query: 61 ---NVDTDLPGSLGQSEEK------PVPAAPVPSPVAPAPVP 93
++ +PG+ Q+ K P P AP PSP+AP P+P
Sbjct: 232 ESFKLEQTVPGAEEQNTGKFKSMVPPPPVAPAPSPLAP-PLP 272
>gi|154354968 phosphatase and actin regulator 2 isoform 1 [Homo
sapiens]
Length = 645
Score = 33.1 bits (74), Expect = 0.049
Identities = 27/102 (26%), Positives = 48/102 (47%), Gaps = 12/102 (11%)
Query: 3 SNIFGTPEENQASWAKSAGAK-SSGGREDLESSGLQRRNSSEASSGDFLDLKGEGDIHE- 60
S+ P+ ++ + + AG ++ G+ + + SS+ ++ DLKGE
Sbjct: 252 SSTSSRPKASKETVSSKAGTVGTTKGKRKTDKQPITSHLSSDTTTSGTSDLKGEPAETRV 311
Query: 61 ---NVDTDLPGSLGQSEEK------PVPAAPVPSPVAPAPVP 93
++ +PG+ Q+ K P P AP PSP+AP P+P
Sbjct: 312 ESFKLEQTVPGAEEQNTGKFKSMVPPPPVAPAPSPLAP-PLP 352
>gi|115392133 collagen, type XXIV, alpha 1 [Homo sapiens]
Length = 1714
Score = 33.1 bits (74), Expect = 0.049
Identities = 28/93 (30%), Positives = 36/93 (38%), Gaps = 11/93 (11%)
Query: 21 GAKSSGGREDLESSGLQRRNSSEASSGDFLDLKGE----GDIHENVDTDLPGSLGQSEEK 76
G G E L+ + N + + L GE G I E + PG LG EK
Sbjct: 828 GYAGEPGPEGLKGEVGDQGNIGKIGETGPVGLPGEVGMTGSIGEKGERGSPGPLGPQGEK 887
Query: 77 PVPAAP----VPSPVAPAPVPSR---RNPPGGK 102
V P VP P+ P +P R PPG +
Sbjct: 888 GVMGYPGPPGVPGPIGPLGLPGHVGARGPPGSQ 920
>gi|5729790 CCCTC-binding factor [Homo sapiens]
Length = 727
Score = 32.7 bits (73), Expect = 0.065
Identities = 21/84 (25%), Positives = 33/84 (39%), Gaps = 5/84 (5%)
Query: 21 GAKSSGGREDLESSGLQRRNSSEASSGDFLDLKGEGDIHENVDTDLPGSLGQSEEKPVPA 80
G + G E +S ++R E D+ +N D + P + E +P P
Sbjct: 582 GVEGENGGETKKSKRGRKRKMRSKKEDSSDSENAEPDLDDNEDEEEPAVEIEPEPEPQPV 641
Query: 81 APVPSPVAPAPVPSRRNPPGGKSS 104
P AP P RR P G+++
Sbjct: 642 TP-----APPPAKKRRGRPPGRTN 660
>gi|169658378 trinucleotide repeat containing 18 [Homo sapiens]
Length = 2968
Score = 32.7 bits (73), Expect = 0.065
Identities = 25/102 (24%), Positives = 41/102 (40%), Gaps = 4/102 (3%)
Query: 2 ASNIFGTPEENQASWAKSAGAKSSGGREDLESSGLQRRNSSEASSGDFLDLKGEGDIHEN 61
AS+ + + +S + S+ + SS SS +SS +SS
Sbjct: 2613 ASSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSST 2672
Query: 62 VDTDLPGSLGQSEEKPVPAAPVPSPVAPAPVPSRRNPPGGKS 103
D D S S+++ P AP P A A +P++ GK+
Sbjct: 2673 TDED---SSCSSDDEAAP-APTAGPSAQAALPTKATKQAGKA 2710
Score = 27.3 bits (59), Expect = 2.7
Identities = 23/102 (22%), Positives = 37/102 (36%), Gaps = 4/102 (3%)
Query: 2 ASNIFGTPEENQASWAKSAGAKSSGGREDLESSGLQRRNSSEASSGDFLDLKGEGDIHEN 61
+S+ + + +S + S+ + SS SS +SS +S + G +
Sbjct: 2638 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSTTDEDSSCSSDDEAAPAPTAGPSAQA 2697
Query: 62 V----DTDLPGSLGQSEEKPVPAAPVPSPVAPAPVPSRRNPP 99
T G S P P P P AP P P++ P
Sbjct: 2698 ALPTKATKQAGKARPSAHSPGKKTPAPQPQAPPPQPTQPLQP 2739
Score = 26.6 bits (57), Expect = 4.6
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Query: 7 GTPEENQASWAKSAGAKSSGGREDLESSGLQRRNSSEASSGDFLDLKGEGD 57
G P+ + A+ GA+ S SSG +SS +SSG + + EGD
Sbjct: 2539 GNPKSPDKAQAEQDGAEESESSSS-SSSGSSSSSSSSSSSGSETEGEEEGD 2588
>gi|19923748 dihydrolipoamide S-succinyltransferase (E2 component of
2-oxo-glutarate complex) [Homo sapiens]
Length = 453
Score = 32.7 bits (73), Expect = 0.065
Identities = 14/26 (53%), Positives = 18/26 (69%), Gaps = 2/26 (7%)
Query: 77 PVPAAPVPSPVAPAPVPSRRNPPGGK 102
P PAAP+P+ + P P PS+ PP GK
Sbjct: 174 PPPAAPIPTQMPPVPSPSQ--PPSGK 197
>gi|50053795 eukaryotic translation initiation factor 4B [Homo
sapiens]
Length = 611
Score = 32.3 bits (72), Expect = 0.084
Identities = 28/95 (29%), Positives = 37/95 (38%), Gaps = 7/95 (7%)
Query: 10 EENQASWAKSAGAKSSGGREDLESSGLQRRNSSEASSGDFLDLKGEGDIHENVDTDLPGS 69
EE Q G++SS SS RR SE S L+ E +++ D P S
Sbjct: 410 EETQERERSRTGSESSQTGTSTTSSRNARRRESEKS------LENE-TLNKEEDCHSPTS 462
Query: 70 LGQSEEKPVPAAPVPSPVAPAPVPSRRNPPGGKSS 104
++P+ P P P A V NPP S
Sbjct: 463 KPPKPDQPLKVMPAPPPKENAWVKRSSNPPARSQS 497
>gi|149158690 HLA-B associated transcript-2 [Homo sapiens]
Length = 2157
Score = 32.3 bits (72), Expect = 0.084
Identities = 28/96 (29%), Positives = 37/96 (38%), Gaps = 7/96 (7%)
Query: 7 GTPEENQASWAKSAGAKSSGGREDLESSGLQRRNSSEASSGDFLDLKGEGDIHENVDTDL 66
G P A ++A S G E E +R+ SE S D + T
Sbjct: 1071 GGPNHPPAPRGRTASETRSEGSEYEEIPKRRRQRGSETGSETHESDLAPSD--KEAPTPK 1128
Query: 67 PGSLGQSEEKPVPAAPVPSPVAPAPVPSRRNPPGGK 102
G+L Q VP AP P P+P P+R GG+
Sbjct: 1129 EGTLTQ-----VPLAPPPPGAPPSPAPARFTARGGR 1159
Score = 28.1 bits (61), Expect = 1.6
Identities = 25/103 (24%), Positives = 39/103 (37%), Gaps = 13/103 (12%)
Query: 10 EENQASWA----------KSAGAKSSGGREDLESSGLQRRNSSEASSGDFLDLKGEGDIH 59
+EN WA K + GR D + G + S+++SG+ + +G
Sbjct: 320 QENDDGWAGAHEEVDYTEKLKFSDEEDGR-DSDEEGAEGHRDSQSASGEERPPEADGKKG 378
Query: 60 ENVDTDLPGSLGQSEEKPVPAAPVPSPVAPAP--VPSRRNPPG 100
+ +++ P E P P P AP P P R P G
Sbjct: 379 NSPNSEPPTPKTAWAETSRPPETEPGPPAPKPPLPPPHRGPAG 421
Score = 26.2 bits (56), Expect = 6.0
Identities = 27/102 (26%), Positives = 37/102 (36%), Gaps = 12/102 (11%)
Query: 9 PEENQASWAKSAGAKSSG----------GREDLESSGLQRRNSSEASSGDFLDLK-GEGD 57
PE+ +W + SS RE+ E + R ++ A LD K G D
Sbjct: 442 PEDEDEAWRQRRKQSSSEISLAVERARRRREEEERRMQEERRAACAEKLKRLDEKFGAPD 501
Query: 58 IHENVDTDLPGSLGQSEEKPVPAAPVPSPVAPAPVPSRRNPP 99
+ P + S P PA P P PAP P+ P
Sbjct: 502 KRLKAEPAAPPA-APSTPAPPPAVPKELPAPPAPPPASAPTP 542
>gi|47132519 Ras association and pleckstrin homology domains 1
isoform 1 [Homo sapiens]
Length = 1250
Score = 32.3 bits (72), Expect = 0.084
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 77 PVPAAPVPSPVAPAPVPSRRNPPGGKSS 104
PVPA P P P +P P + PG K+S
Sbjct: 934 PVPAPPPPPPPTASPTPDKSGSPGKKTS 961
Score = 28.5 bits (62), Expect = 1.2
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 77 PVPAAPVPSPVAPAPVPSRRNPPGGKSS 104
P P P P P P P+PS+ P G ++
Sbjct: 634 PPPPPPPPPPPPPPPLPSQSAPSAGSAA 661
>gi|14589876 embryonal Fyn-associated substrate isoform 2 [Homo
sapiens]
Length = 468
Score = 32.3 bits (72), Expect = 0.084
Identities = 15/30 (50%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
Query: 76 KPVPAAPVPSPVAPAPVPSRRNPPGGKSSL 105
+P+PA PVP +P+PVPS PG K S+
Sbjct: 212 RPLPALPVPEAPSPSPVPS--PAPGRKGSI 239
>gi|5031681 embryonal Fyn-associated substrate isoform 1 [Homo
sapiens]
Length = 561
Score = 32.3 bits (72), Expect = 0.084
Identities = 15/30 (50%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
Query: 76 KPVPAAPVPSPVAPAPVPSRRNPPGGKSSL 105
+P+PA PVP +P+PVPS PG K S+
Sbjct: 305 RPLPALPVPEAPSPSPVPS--PAPGRKGSI 332
>gi|148806902 TBC1 domain family, member 12 [Homo sapiens]
Length = 775
Score = 32.0 bits (71), Expect = 0.11
Identities = 28/82 (34%), Positives = 35/82 (42%), Gaps = 9/82 (10%)
Query: 25 SGGREDLESSGLQRRNSSEASSGDFLDLKGEGDIHENVDTDLPGSLGQSEEKPVPAA--P 82
+GG E+ G S+E ++G G DIH N S GQS +P A P
Sbjct: 240 AGGPEE----GAPPATSAERTNGGAEPRLGFSDIHFNSRNTFQVSRGQSARDHLPPAGPP 295
Query: 83 VPSPVA---PAPVPSRRNPPGG 101
VP P A PA +R GG
Sbjct: 296 VPLPAAEQGPAGASARARRSGG 317
>gi|21536320 heterogeneous nuclear ribonucleoprotein U-like 1
isoform d [Homo sapiens]
Length = 756
Score = 32.0 bits (71), Expect = 0.11
Identities = 24/104 (23%), Positives = 40/104 (38%), Gaps = 15/104 (14%)
Query: 7 GTPEENQASWAKSAGAKSSGGREDLESSGLQRRNSSEASSGDFLDLKGEGDIHENVDTDL 66
G P N+ + G GG R + + G + + + +N +++
Sbjct: 533 GPPGGNRGGFQNRGGGSGGGGN--------YRGGFNRSGGGGYSQNRWGNNNRDNNNSNN 584
Query: 67 PGSLGQSEEKPVPAA----PVPSPVAPAPVPS---RRNPPGGKS 103
GS ++ ++ P P P P P P PS RNPPG +
Sbjct: 585 RGSYNRAPQQQPPPQQPPPPQPPPQQPPPPPSYSPARNPPGAST 628
>gi|21536326 heterogeneous nuclear ribonucleoprotein U-like 1
isoform a [Homo sapiens]
Length = 856
Score = 32.0 bits (71), Expect = 0.11
Identities = 24/104 (23%), Positives = 40/104 (38%), Gaps = 15/104 (14%)
Query: 7 GTPEENQASWAKSAGAKSSGGREDLESSGLQRRNSSEASSGDFLDLKGEGDIHENVDTDL 66
G P N+ + G GG R + + G + + + +N +++
Sbjct: 633 GPPGGNRGGFQNRGGGSGGGGN--------YRGGFNRSGGGGYSQNRWGNNNRDNNNSNN 684
Query: 67 PGSLGQSEEKPVPAA----PVPSPVAPAPVPS---RRNPPGGKS 103
GS ++ ++ P P P P P P PS RNPPG +
Sbjct: 685 RGSYNRAPQQQPPPQQPPPPQPPPQQPPPPPSYSPARNPPGAST 728
>gi|149393140 hypothetical protein LOC84067 isoform 1 [Homo sapiens]
Length = 986
Score = 32.0 bits (71), Expect = 0.11
Identities = 27/92 (29%), Positives = 38/92 (41%), Gaps = 7/92 (7%)
Query: 9 PEENQASWAKSAGAKSSGGREDLESSGLQRRNSSEASSGDFLDLKGEGDIHENVDTDLPG 68
P ASWA+ ++ +G RED+ G +SS ++ +
Sbjct: 469 PRPEHASWARGGPSRETGRREDITGPGSPSVDSSSVTTVPRPSTPSRLALFLRQQ----- 523
Query: 69 SLGQSEEK-PVPAAPVPSPVAPAPVPSRRNPP 99
SLG SE P P +P S +PA P RR P
Sbjct: 524 SLGGSESPGPAPCSPGLS-ASPASSPGRRPTP 554
>gi|45120115 hypothetical protein LOC56905 [Homo sapiens]
Length = 1047
Score = 32.0 bits (71), Expect = 0.11
Identities = 22/71 (30%), Positives = 28/71 (39%), Gaps = 1/71 (1%)
Query: 35 GLQRRNSSEASSGDFLDLKGEGDIHE-NVDTDLPGSLGQSEEKPVPAAPVPSPVAPAPVP 93
GLQ R+ GDF G E V D P SL +++ P P P P P P
Sbjct: 914 GLQWRDCVRRQLGDFDTEAGAVSSSEPTVARDEPESLALAQKSPAPKVRKPGRKPPTPGP 973
Query: 94 SRRNPPGGKSS 104
+ G+ S
Sbjct: 974 EKAEAAAGEES 984
Score = 25.8 bits (55), Expect = 7.9
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 77 PVPAAPVPSPVAPAPVPSRRNP 98
P+PAA VPS AP P++ P
Sbjct: 661 PLPAAVVPSTPTSAPAPTQPAP 682
>gi|150378449 X-ray radiation resistance associated 1 [Homo
sapiens]
Length = 792
Score = 32.0 bits (71), Expect = 0.11
Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 3/69 (4%)
Query: 2 ASNIFGTPEENQASWAKSAGAKSSGGREDLESSGLQRRNSSEASSGDFLDLKGEGDIHEN 61
A N+ PEE Q W + L + +RR S +A+S +F KG+ +
Sbjct: 22 ARNLLRVPEEGQGHWLVVQKGNLKKKPKGLVGAQAERRESLKATSFEF---KGKKESRRE 78
Query: 62 VDTDLPGSL 70
DLPG +
Sbjct: 79 NQVDLPGHI 87
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.303 0.126 0.357
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,639,477
Number of Sequences: 37866
Number of extensions: 344733
Number of successful extensions: 3826
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 233
Number of HSP's successfully gapped in prelim test: 299
Number of HSP's that attempted gapping in prelim test: 2832
Number of HSP's gapped (non-prelim): 1186
length of query: 108
length of database: 18,247,518
effective HSP length: 78
effective length of query: 30
effective length of database: 15,293,970
effective search space: 458819100
effective search space used: 458819100
T: 11
A: 40
X1: 17 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.8 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.