Guide to the Human Genome
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Name: HN1 Sequence: fasta or formatted (108aa) NCBI GI: 50345292
Description:

hematological and neurological expressed 1 isoform 3

Referenced in:

Neurons

Other entries for this name:
alt prot [181aa] hematological and neurological expressed 1 isoform 2
alt prot [154aa] hematological and neurological expressed 1 isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.3         10           2
 C cysteine            0.0          0           0
 D aspartate           5.6          6           1
 E glutamate           8.3          9           2
 F phenylalanine       1.9          2           1
 G glycine            12.0         13           2
 H histidine           0.9          1           1
 I isoleucine          1.9          2           1
 K lysine              4.6          5           1
 L leucine             7.4          8           1
 M methionine          0.9          1           1
 N asparagine          4.6          5           1
 P proline            11.1         12           2
 Q glutamine           2.8          3           1
 R arginine            4.6          5           2
 S serine             15.7         17           2
 T threonine           1.9          2           1
 V valine              5.6          6           1
 W tryptophan          0.9          1           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hematological and neurological expressed 1 isoform 3... 
HN1                   1.000   hematological and neurological expressed 1 isoform 1 ...
HN1                   0.420   hematological and neurological expressed 1 isoform 2...
MYO9B                 0.067   myosin IXB isoform 1 
RCOR3                 0.052   REST corepressor 3 isoform a 
RCOR3                 0.052   REST corepressor 3 isoform d 
KIF26B                0.052   kinesin family member 26B 
KDM6B                 0.047   lysine (K)-specific demethylase 6B 
C20orf177             0.047   hypothetical protein LOC63939 
SETD1A                0.041   SET domain containing 1A 
B4GALNT4              0.041   beta 1,4-N-acetylgalactosaminyltransferase-transfera...
PHACTR2               0.041   phosphatase and actin regulator 2 isoform 4 
PHACTR2               0.041   phosphatase and actin regulator 2 isoform 3 
PHACTR2               0.041   phosphatase and actin regulator 2 isoform 2 
PHACTR2               0.041   phosphatase and actin regulator 2 isoform 1 
COL24A1               0.041   collagen, type XXIV, alpha 1 
CTCF                  0.041   CCCTC-binding factor 
TNRC18                0.041   trinucleotide repeat containing 18 
DLST                  0.041   dihydrolipoamide S-succinyltransferase (E2 component...
EIF4B                 0.036   eukaryotic translation initiation factor 4B 
BAT2                  0.036   HLA-B associated transcript-2 
RAPH1                 0.036   Ras association and pleckstrin homology domains 1 is...
EFS                   0.036   embryonal Fyn-associated substrate isoform 2 
EFS                   0.036   embryonal Fyn-associated substrate isoform 1 
TBC1D12               0.036   TBC1 domain family, member 12 
HNRNPUL1              0.036   heterogeneous nuclear ribonucleoprotein U-like 1 iso...
HNRNPUL1              0.036   heterogeneous nuclear ribonucleoprotein U-like 1 iso...
FAM160A2              0.036   hypothetical protein LOC84067 isoform 1 
C15orf39              0.036   hypothetical protein LOC56905 
XRRA1                 0.036   X-ray radiation resistance associated 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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