CTCF 33337

Name: CTCF	Sequence: fasta or formatted (727aa)		NCBI GI: 5729790
Description: CCCTC-binding factor		Referenced in: Kruppel-related Zinc Finger Proteins
Composition: Amino acid Percentage Count Longest homopolymer A alanine 5.6 41 2 C cysteine 3.7 27 1 D aspartate 5.5 40 2 E glutamate 10.7 78 4 F phenylalanine 2.3 17 1 G glycine 5.4 39 2 H histidine 4.5 33 1 I isoleucine 3.0 22 2 K lysine 8.9 65 3 L leucine 4.8 35 2 M methionine 3.2 23 2 N asparagine 3.3 24 1 P proline 6.9 50 3 Q glutamine 5.5 40 2 R arginine 6.2 45 3 S serine 4.7 34 2 T threonine 6.5 47 2 V valine 6.6 48 2 W tryptophan 0.1 1 1 Y tyrosine 2.5 18 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 CCCTC-binding factor CTCFL 0.359 CCCTC-binding factor-like protein ZNF28 0.146 zinc finger protein 28 ZNF182 0.144 zinc finger protein 21 isoform 2 ZNF182 0.144 zinc finger protein 21 isoform 1 ZNF470 0.144 zinc finger protein 470 ZNF135 0.142 zinc finger protein 135 LOC100287429 0.140 PREDICTED: hypothetical protein XP_002343926 isofor... LOC100287429 0.140 PREDICTED: hypothetical protein XP_002343925 isofor... LOC100287429 0.140 PREDICTED: hypothetical protein XP_002343927 isofor... ZNF84 0.140 zinc finger protein 84 ZNF84 0.140 zinc finger protein 84 ZNF180 0.140 zinc finger protein 180 ZNF845 0.139 zinc finger protein 845 ZFP64 0.139 zinc finger protein 64 isoform c ZFP64 0.139 zinc finger protein 64 isoform a ZNF79 0.138 zinc finger protein 79 ZNF83 0.138 zinc finger protein 83 isoform b ZNF83 0.138 zinc finger protein 83 isoform b ZFP28 0.138 zinc finger protein 28 ZNF782 0.138 zinc finger protein 782 ZNF836 0.138 zinc finger protein 836 ZNF568 0.137 zinc finger protein 568 ZNF778 0.137 zinc finger protein 778 ZNF629 0.137 zinc finger protein 629 ZNF761 0.137 zinc finger protein 761 ZNF567 0.136 zinc finger protein 567 ZNF543 0.135 zinc finger protein 543 ZNF34 0.135 zinc finger protein 34 ZNF808 0.135 zinc finger protein 808 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.