Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: SLC35A2 Sequence: fasta or formatted (396aa) NCBI GI: 5032211
Description:

solute carrier family 35, member A2 isoform a

Referenced in:

Solute Carrier Families

Other entries for this name:
alt prot [393aa] solute carrier family 35, member A2 isoform c
alt prot [242aa] solute carrier family 35, member A2 isoform b
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            13.4         53           2
 C cysteine            0.8          3           1
 D aspartate           1.5          6           1
 E glutamate           1.5          6           1
 F phenylalanine       4.8         19           3
 G glycine            10.4         41           4
 H histidine           1.5          6           1
 I isoleucine          3.5         14           1
 K lysine              3.5         14           1
 L leucine            15.7         62           4
 M methionine          0.8          3           1
 N asparagine          2.5         10           2
 P proline             5.3         21           4
 Q glutamine           4.5         18           2
 R arginine            3.5         14           2
 S serine              7.6         30           2
 T threonine           5.3         21           2
 V valine              9.8         39           3
 W tryptophan          1.3          5           2
 Y tyrosine            2.8         11           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   solute carrier family 35, member A2 isoform a 
SLC35A2               0.980   solute carrier family 35, member A2 isoform c [Homo...
SLC35A3               0.377   solute carrier family 35 member 3A 
SLC35A2               0.331   solute carrier family 35, member A2 isoform b 
SLC35A1               0.328   solute carrier family 35 (CMP-sialic acid transporter...
SLC35A5               0.106   solute carrier family 35, member A5 
SLC35A4               0.085   solute carrier family 35, member A4 
C2orf18               0.023   ANT2-binding protein 
BSN                   0.013   bassoon protein 
LOC728661             0.013   similar to solute carrier family 35, member E2 [Hom...
TSPAN10               0.012   tetraspanin 10 
FOXO1                 0.011   forkhead box O1 
PDCD6IP               0.009   programmed cell death 6 interacting protein isoform...
PDCD6IP               0.009   programmed cell death 6 interacting protein isoform ...
ATXN7                 0.009   ataxin 7 isoform b 
ATXN7                 0.009   ataxin 7 isoform a 
ZIC5                  0.009   zinc finger protein of the cerebellum 5 
RBM33                 0.009   RNA binding motif protein 33 
LOC100292576          0.008   PREDICTED: hypothetical protein 
LOC100288860          0.008   PREDICTED: hypothetical protein 
LOC100288860          0.008   PREDICTED: hypothetical protein XP_002343712 
NOVA2                 0.008   neuro-oncological ventral antigen 2 
LOC100294001          0.007   PREDICTED: hypothetical protein 
LOC100290969          0.007   PREDICTED: hypothetical protein XP_002347122 
LOC100289446          0.007   PREDICTED: hypothetical protein XP_002344250 
ENHO                  0.007   adropin 
FOXK1                 0.007   forkhead box K1 
MEX3C                 0.007   ring finger and KH domain containing 2 
FOXQ1                 0.007   forkhead box Q1 
SLC25A32              0.007   solute carrier family 25, member 32 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press