Guide to the Human Genome
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Name: LOC100289446 Sequence: fasta or formatted (241aa) NCBI GI: 239743965
Description:

PREDICTED: hypothetical protein XP_002344250

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.8         26           3
 C cysteine            0.4          1           1
 D aspartate           2.1          5           1
 E glutamate           4.6         11           1
 F phenylalanine       0.4          1           1
 G glycine             9.1         22           2
 H histidine           5.4         13           1
 I isoleucine          0.4          1           1
 K lysine              1.7          4           1
 L leucine            29.0         70           4
 M methionine          0.4          1           1
 N asparagine          0.8          2           1
 P proline             7.9         19           2
 Q glutamine          10.0         24           2
 R arginine            2.9          7           1
 S serine              2.1          5           1
 T threonine           1.7          4           1
 V valine              9.5         23           3
 W tryptophan          0.0          0           0
 Y tyrosine            0.8          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002344250 
LOC100294001          1.000   PREDICTED: hypothetical protein 
LOC100290969          1.000   PREDICTED: hypothetical protein XP_002347122 
PGAP2                 0.023   FGF receptor activating protein 1 isoform 3 
LOC728767             0.021   PREDICTED: hypothetical protein 
LOC728767             0.021   PREDICTED: hypothetical protein 
LOC100128648          0.016   PREDICTED: hypothetical protein 
LOC100128648          0.016   PREDICTED: hypothetical protein 
LOC100128648          0.016   PREDICTED: hypothetical protein 
MPDU1                 0.016   mannose-P-dolichol utilization defect 1 
LOC100293520          0.011   PREDICTED: hypothetical protein 
LOC100287207          0.011   PREDICTED: hypothetical protein XP_002342660 
LOC100294237          0.011   PREDICTED: hypothetical protein 
LOC100294174          0.011   PREDICTED: hypothetical protein 
LOC100294124          0.011   PREDICTED: hypothetical protein 
SLC35A2               0.011   solute carrier family 35, member A2 isoform c [Homo...
SLC35A2               0.011   solute carrier family 35, member A2 isoform b 
SLC35A2               0.011   solute carrier family 35, member A2 isoform a 
LOC100288796          0.011   PREDICTED: hypothetical protein 
LOC100288796          0.011   PREDICTED: hypothetical protein XP_002343710 
C14orf21              0.011   hypothetical protein LOC161424 
TBRG4                 0.011   cell cycle progression 2 protein isoform 1 
ZNF831                0.011   zinc finger protein 831 
KLHL34                0.011   kelch-like 34 
LOC100129848          0.009   PREDICTED: hypothetical protein 
LOC100289722          0.009   PREDICTED: hypothetical protein XP_002347474 
LOC100129848          0.009   PREDICTED: hypothetical protein 
LOC100288922          0.009   PREDICTED: hypothetical protein XP_002343309 
LOC100129848          0.009   PREDICTED: hypothetical protein 
LOC100294292          0.009   PREDICTED: hypothetical protein XP_002344066 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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