Guide to the Human Genome
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Name: LOC728661 Sequence: fasta or formatted (405aa) NCBI GI: 160707905
Description:

similar to solute carrier family 35, member E2

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.7         31           3
 C cysteine            1.5          6           2
 D aspartate           2.7         11           2
 E glutamate           3.7         15           2
 F phenylalanine       5.7         23           3
 G glycine             6.7         27           2
 H histidine           1.5          6           1
 I isoleucine          4.0         16           1
 K lysine              4.4         18           2
 L leucine            14.1         57           4
 M methionine          3.0         12           1
 N asparagine          2.7         11           1
 P proline             4.7         19           2
 Q glutamine           3.0         12           2
 R arginine            3.0         12           1
 S serine             10.4         42           3
 T threonine           7.7         31           2
 V valine             10.4         42           2
 W tryptophan          1.0          4           1
 Y tyrosine            2.5         10           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   similar to solute carrier family 35, member E2 [Hom... 
SLC35E2               0.476   solute carrier family 35, member E2 
SLC35E1               0.130   solute carrier family 35, member E1 
SLC35E3               0.077   solute carrier family 35, member E2 
SLC35E4               0.066   solute carrier family 35, member E4 
SLC35C2               0.058   solute carrier family 35, member C2 isoform a 
SLC35C2               0.058   solute carrier family 35, member C2 isoform a 
SLC35D2               0.039   solute carrier family 35, member D2 
SLC35C1               0.037   GDP-fucose transporter 1 isoform a 
SLC35C1               0.037   GDP-fucose transporter 1 isoform b 
SLC35C1               0.037   GDP-fucose transporter 1 isoform b 
SLC35C2               0.035   solute carrier family 35, member C2 isoform b 
SLC35A1               0.026   solute carrier family 35 (CMP-sialic acid transporter...
SLC35B1               0.013   solute carrier family 35, member B1 
SLC35B4               0.013   solute carrier family 35, member B4 
SLC35A2               0.013   solute carrier family 35, member A2 isoform c [Homo...
SLC35A2               0.013   solute carrier family 35, member A2 isoform a 
CATSPERG              0.008   hypothetical protein LOC57828 
DRD5                  0.008   dopamine receptor D5 
C14orf135             0.008   hepatitis C virus F protein-binding protein 2 [Homo...
ATP11B                0.007   ATPase, class VI, type 11B 
BEND5                 0.007   BEN domain containing 5 
TMEM20                0.007   transmembrane protein 20 isoform 1 
TMEM20                0.007   transmembrane protein 20 isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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