Guide to the Human Genome
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Name: SLC35A4 Sequence: fasta or formatted (324aa) NCBI GI: 18087849
Description:

solute carrier family 35, member A4

Referenced in:

Solute Carrier Families

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.1         36           4
 C cysteine            2.2          7           1
 D aspartate           0.9          3           1
 E glutamate           1.2          4           1
 F phenylalanine       2.8          9           2
 G glycine             9.3         30           3
 H histidine           1.9          6           1
 I isoleucine          2.2          7           1
 K lysine              1.2          4           1
 L leucine            22.5         73           4
 M methionine          3.4         11           1
 N asparagine          2.8          9           3
 P proline             6.5         21           3
 Q glutamine           3.7         12           1
 R arginine            4.9         16           1
 S serine              7.7         25           2
 T threonine           4.0         13           1
 V valine              6.5         21           2
 W tryptophan          1.5          5           1
 Y tyrosine            3.7         12           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   solute carrier family 35, member A4 
SLC35A1               0.112   solute carrier family 35 (CMP-sialic acid transporter...
SLC35A3               0.112   solute carrier family 35 member 3A 
SLC35A2               0.102   solute carrier family 35, member A2 isoform c [Homo...
SLC35A2               0.102   solute carrier family 35, member A2 isoform a 
SLC35A5               0.080   solute carrier family 35, member A5 
SLC35E4               0.023   solute carrier family 35, member E4 
MYEOV                 0.010   myeloma overexpressed 
SORCS2                0.008   VPS10 domain receptor protein SORCS 2 
SP7                   0.008   osterix 
LOC100294312          0.008   PREDICTED: hypothetical protein XP_002344082 
LOC100294220          0.008   PREDICTED: hypothetical protein 
LOC100294184          0.008   PREDICTED: hypothetical protein 
LGR6                  0.008   leucine-rich repeat-containing G protein-coupled rec...
ZNF395                0.007   zinc finger protein 395 
LOC100131098          0.007   PREDICTED: hypothetical protein 
LOC100287514          0.007   PREDICTED: hypothetical protein XP_002343754 
C6orf64               0.007   hypothetical protein LOC55776 
WDR40B                0.007   WD repeat domain 40B 
CMTM2                 0.007   chemokine-like factor superfamily 2 
SLC30A8               0.005   solute carrier family 30 member 8 
LOC100131098          0.005   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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