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Search of human proteins with 49619234
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|49619234 hypothetical protein LOC92806 [Homo sapiens]
(187 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|49619234 hypothetical protein LOC92806 [Homo sapiens] 366 e-102
gi|22209001 hypothetical protein LOC200765 [Homo sapiens] 105 2e-23
gi|22547224 jerky homolog-like [Homo sapiens] 63 1e-10
gi|23312392 tigger transposable element derived 2 [Homo sapiens] 62 3e-10
gi|22219477 tigger transposable element derived 4 [Homo sapiens] 54 6e-08
gi|239755627 PREDICTED: similar to cag [Homo sapiens] 53 2e-07
gi|239750125 PREDICTED: hypothetical protein XP_002347296 [Homo ... 53 2e-07
gi|239744433 PREDICTED: hypothetical protein XP_002343159 [Homo ... 53 2e-07
gi|13569924 hypothetical protein LOC81789 [Homo sapiens] 52 4e-07
gi|117938293 jerky isoform a [Homo sapiens] 46 2e-05
gi|117938295 jerky isoform b [Homo sapiens] 46 2e-05
gi|22325392 tigger transposable element derived 7 [Homo sapiens] 45 5e-05
gi|21735415 centromere protein B [Homo sapiens] 42 3e-04
gi|239756639 PREDICTED: similar to hCG1802057 [Homo sapiens] 36 0.017
gi|239751125 PREDICTED: hypothetical protein XP_002347719 [Homo ... 36 0.017
gi|239745616 PREDICTED: hypothetical protein XP_002344143 [Homo ... 36 0.017
gi|144922631 tigger transposable element derived 5 [Homo sapiens] 35 0.029
gi|126723390 ankyrin repeat domain 24 [Homo sapiens] 32 0.42
gi|212549538 DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 12 [Ho... 31 0.54
gi|18959212 GS homeobox 2 [Homo sapiens] 31 0.71
gi|47059046 dachsous 2 isoform 1 [Homo sapiens] 31 0.71
gi|21361348 UTP14, U3 small nucleolar ribonucleoprotein, homolog... 30 1.2
gi|51871374 UTP14, U3 small nucleolar ribonucleoprotein, homolog... 30 1.2
gi|154800469 lung cancer-related protein 8 isoform c [Homo sapiens] 30 1.2
gi|154800467 lung cancer-related protein 8 isoform b [Homo sapiens] 30 1.2
gi|21361664 lung cancer-related protein 8 isoform a [Homo sapiens] 30 1.2
gi|17017963 forkhead box P2 isoform I [Homo sapiens] 30 1.6
gi|100913204 DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11 iso... 30 1.6
gi|100913202 DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11 iso... 30 1.6
gi|132566527 DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11 iso... 30 1.6
>gi|49619234 hypothetical protein LOC92806 [Homo sapiens]
Length = 187
Score = 366 bits (939), Expect = e-102
Identities = 187/187 (100%), Positives = 187/187 (100%)
Query: 1 MPGERPTDATVIPSAKRERKAITLDLKLEVLRRFEAGEKLSQIAKALDLAISTVATIRDS 60
MPGERPTDATVIPSAKRERKAITLDLKLEVLRRFEAGEKLSQIAKALDLAISTVATIRDS
Sbjct: 1 MPGERPTDATVIPSAKRERKAITLDLKLEVLRRFEAGEKLSQIAKALDLAISTVATIRDS 60
Query: 61 KEKIKASSQIATPLRASRLTRHRSAVMESMEQLLSLWLEDQSQPNATLSAAIVQEKAEFD 120
KEKIKASSQIATPLRASRLTRHRSAVMESMEQLLSLWLEDQSQPNATLSAAIVQEKAEFD
Sbjct: 61 KEKIKASSQIATPLRASRLTRHRSAVMESMEQLLSLWLEDQSQPNATLSAAIVQEKAEFD 120
Query: 121 DLQREHGEGSQTERFHASQGWLVRFKECHCLPHFKMNSAAPSNKDMYTEMLKSIIEEGEY 180
DLQREHGEGSQTERFHASQGWLVRFKECHCLPHFKMNSAAPSNKDMYTEMLKSIIEEGEY
Sbjct: 121 DLQREHGEGSQTERFHASQGWLVRFKECHCLPHFKMNSAAPSNKDMYTEMLKSIIEEGEY 180
Query: 181 TPQVSLT 187
TPQVSLT
Sbjct: 181 TPQVSLT 187
>gi|22209001 hypothetical protein LOC200765 [Homo sapiens]
Length = 591
Score = 105 bits (263), Expect = 2e-23
Identities = 63/181 (34%), Positives = 104/181 (57%), Gaps = 7/181 (3%)
Query: 9 ATVIPSAKRERKAITLDLKLEVLRRFEAGEKLSQIAKALDLAISTVATIRDSKEKIKASS 68
A+ S ++ R ++TL+ KLE+++ E G ++I + L L TV+ + ++KEK
Sbjct: 2 ASKCSSERKSRTSLTLNQKLEMIKLSEEGMSKAEIGRRLGLLRQTVSQVVNAKEKFLKEV 61
Query: 69 QIATPLRASRLTRHRSAVMESMEQLLSLWLEDQSQPNATLSAAIVQEKA--EFDDLQREH 126
+ ATP+ +R+ R R++++ ME++L +W+EDQ+ N LS +++Q KA F+ ++ E
Sbjct: 62 KSATPMN-TRMIRKRNSLIADMEKVLVVWIEDQTSRNIPLSQSLIQNKALTLFNSMKAER 120
Query: 127 GEGSQTERFHASQGWLVRFKECHCLPHFKMNSAAPS----NKDMYTEMLKSIIEEGEYTP 182
G + E+F AS+GW +RFKE + K A S Y E L II+EG YT
Sbjct: 121 GVEAAEEKFEASRGWFMRFKERSHFHNIKAQGEAASADVEAAASYPEALAKIIDEGGYTK 180
Query: 183 Q 183
Q
Sbjct: 181 Q 181
>gi|22547224 jerky homolog-like [Homo sapiens]
Length = 524
Score = 63.2 bits (152), Expect = 1e-10
Identities = 44/140 (31%), Positives = 73/140 (52%), Gaps = 8/140 (5%)
Query: 14 SAKRERKAITLDLKLEVLRRFEAGEKLSQIAKALDLAISTVATIRDSKEKI--KASSQIA 71
S KR+R +T+ KL+++++ E G Q+A + +TV IR +KEKI ASS +
Sbjct: 2 SGKRKRVVLTIKDKLDIIKKLEDGGSSKQLAVIYGIGETTVRDIRKNKEKIITYASSSDS 61
Query: 72 TPLRASRLTRHRSAVMESMEQLLSLWLEDQSQPNATLSAAIVQEKAEFDDLQREHGEGSQ 131
T L A R + + ++ E +++ + W Q +S I ++AEF + G
Sbjct: 62 TSLLAKRKSM-KPSMYEELDRAMLEWFNQQRAKGNPISGPICAKRAEF----FFYALGMD 116
Query: 132 TERFHASQGWLVRFKECHCL 151
+ F+ S GWL RFK+ H +
Sbjct: 117 GD-FNPSAGWLTRFKQRHSI 135
>gi|23312392 tigger transposable element derived 2 [Homo sapiens]
Length = 525
Score = 62.0 bits (149), Expect = 3e-10
Identities = 39/140 (27%), Positives = 71/140 (50%), Gaps = 10/140 (7%)
Query: 16 KRERKAITLDLKLEVLRRFEAGEKLSQIAKALDLAISTVATIRDSKEKIKASSQIATPLR 75
KR+R +T+ KL+++++ E G +++ + STV I+ +KE+I + + P
Sbjct: 4 KRKRVVLTIKDKLDIIKKLEEGISFKKLSVVYGIGESTVRDIKKNKERIINYANSSDPTS 63
Query: 76 -ASRLTRHRSAVMESMEQLLSLWLEDQSQPNATLSAAIVQEKAE--FDDLQREHGEGSQT 132
S+ +S+ E +++++ W Q +S I ++A+ FD L E
Sbjct: 64 GVSKRKSMKSSTYEELDRVMIEWFNQQKTDGIPVSGTICAKQAKFFFDALGMEGD----- 118
Query: 133 ERFHASQGWLVRFKECHCLP 152
F+AS GWL RFK+ H +P
Sbjct: 119 --FNASSGWLTRFKQRHGIP 136
>gi|22219477 tigger transposable element derived 4 [Homo sapiens]
Length = 512
Score = 54.3 bits (129), Expect = 6e-08
Identities = 35/144 (24%), Positives = 76/144 (52%), Gaps = 10/144 (6%)
Query: 4 ERPTDATVIPSAKRERKAITLDLKLEVLRRFEAGEKLSQIAKALDLAISTVATIRDSKEK 63
E DA+ +P +++K+++++ K++++ E+G+K ++IA + +++++I +K+K
Sbjct: 3 EASVDASTLPVTVKKKKSLSIEEKIDIINAVESGKKKAEIAAEYGIKKNSLSSIMKNKDK 62
Query: 64 I-KASSQIATPLRASRLTRHRSAVMESMEQLLSLWLEDQSQPNATLSAAIVQEKAEFDDL 122
+ +A + + RL R+A +E+ L W N ++ +++ KA +D
Sbjct: 63 VLEAFESLRFDPKRKRL---RTAFYTDLEEALMRWYRIAQCLNVPVNGPMLRLKA--NDF 117
Query: 123 QREHGEGSQTERFHASQGWLVRFK 146
++ G F S GWL RFK
Sbjct: 118 AQKLGHND----FKCSNGWLDRFK 137
>gi|239755627 PREDICTED: similar to cag [Homo sapiens]
Length = 392
Score = 52.8 bits (125), Expect = 2e-07
Identities = 37/159 (23%), Positives = 79/159 (49%), Gaps = 16/159 (10%)
Query: 4 ERPTDATVIPSAKRERKAITLDL--KLEVLRRFEAGEKLSQIAKALDLAISTVATIRDSK 61
+RP D V S K++RK + L + K+++L + ++G + + + + ++T+ ++ K
Sbjct: 46 KRPKDTPVNISDKKKRKHLCLSIAQKVKLLEKLDSGVSVKHLTEEYGVGMTTIYDLKKQK 105
Query: 62 EKI-----KASSQIATPLRASRLTRHRSAVMESMEQLLSLWLEDQSQPNATLSAAIVQEK 116
+K+ ++ QI L +R T H+ A E ++++L W+ + + L+ ++ ++
Sbjct: 106 DKLLKFYAESDEQI---LMKNRKTLHK-AKNEDLDRVLKEWIRQRRSEHMPLNGMLIMKQ 161
Query: 117 AEFDDLQREHGEGSQTERFHASQGWLVRFKECHCLPHFK 155
A+ H E S GWL +FK+ H + K
Sbjct: 162 AKI-----YHNELKIEGNCEYSTGWLQKFKKRHGIKFLK 195
>gi|239750125 PREDICTED: hypothetical protein XP_002347296 [Homo
sapiens]
Length = 392
Score = 52.8 bits (125), Expect = 2e-07
Identities = 37/159 (23%), Positives = 79/159 (49%), Gaps = 16/159 (10%)
Query: 4 ERPTDATVIPSAKRERKAITLDL--KLEVLRRFEAGEKLSQIAKALDLAISTVATIRDSK 61
+RP D V S K++RK + L + K+++L + ++G + + + + ++T+ ++ K
Sbjct: 46 KRPKDTPVNISDKKKRKHLCLSIAQKVKLLEKLDSGVSVKHLTEEYGVGMTTIYDLKKQK 105
Query: 62 EKI-----KASSQIATPLRASRLTRHRSAVMESMEQLLSLWLEDQSQPNATLSAAIVQEK 116
+K+ ++ QI L +R T H+ A E ++++L W+ + + L+ ++ ++
Sbjct: 106 DKLLKFYAESDEQI---LMKNRKTLHK-AKNEDLDRVLKEWIRQRRSEHMPLNGMLIMKQ 161
Query: 117 AEFDDLQREHGEGSQTERFHASQGWLVRFKECHCLPHFK 155
A+ H E S GWL +FK+ H + K
Sbjct: 162 AKI-----YHNELKIEGNCEYSTGWLQKFKKRHGIKFLK 195
>gi|239744433 PREDICTED: hypothetical protein XP_002343159 [Homo
sapiens]
Length = 392
Score = 52.8 bits (125), Expect = 2e-07
Identities = 37/159 (23%), Positives = 79/159 (49%), Gaps = 16/159 (10%)
Query: 4 ERPTDATVIPSAKRERKAITLDL--KLEVLRRFEAGEKLSQIAKALDLAISTVATIRDSK 61
+RP D V S K++RK + L + K+++L + ++G + + + + ++T+ ++ K
Sbjct: 46 KRPKDTPVNISDKKKRKHLCLSIAQKVKLLEKLDSGVSVKHLTEEYGVGMTTIYDLKKQK 105
Query: 62 EKI-----KASSQIATPLRASRLTRHRSAVMESMEQLLSLWLEDQSQPNATLSAAIVQEK 116
+K+ ++ QI L +R T H+ A E ++++L W+ + + L+ ++ ++
Sbjct: 106 DKLLKFYAESDEQI---LMKNRKTLHK-AKNEDLDRVLKEWIRQRRSEHMPLNGMLIMKQ 161
Query: 117 AEFDDLQREHGEGSQTERFHASQGWLVRFKECHCLPHFK 155
A+ H E S GWL +FK+ H + K
Sbjct: 162 AKI-----YHNELKIEGNCEYSTGWLQKFKKRHGIKFLK 195
>gi|13569924 hypothetical protein LOC81789 [Homo sapiens]
Length = 521
Score = 51.6 bits (122), Expect = 4e-07
Identities = 31/133 (23%), Positives = 71/133 (53%), Gaps = 8/133 (6%)
Query: 17 RERKAITLDLKLEVLRRFEAGEKLSQIAKALDLAISTVATIRDSKEKIKASSQIATPLRA 76
++R+ +L+ K++V+ ++G++ +AK + ST++T K++ K ++
Sbjct: 7 KKRRQFSLEEKMKVVGAVDSGKRKGDVAKEFGITPSTLSTFL--KDRTKFEEKVREASVG 64
Query: 77 SRLTRHRSAVMESMEQLLSLWLEDQSQPNATLSAAIVQEKAEFDDLQREHGEGSQTERFH 136
+ R RSA+ + +++ + W ++ N ++ +++++KA +L G + F
Sbjct: 65 PQRKRMRSALYDDIDKAVFAWFQEIHAKNILVTGSVIRKKAL--NLANMLG----YDNFQ 118
Query: 137 ASQGWLVRFKECH 149
AS GWL RF++ H
Sbjct: 119 ASVGWLNRFRDRH 131
>gi|117938293 jerky isoform a [Homo sapiens]
Length = 568
Score = 46.2 bits (108), Expect = 2e-05
Identities = 39/151 (25%), Positives = 70/151 (46%), Gaps = 12/151 (7%)
Query: 16 KRERKAITLDLKLEVLRRFEAGEKLSQIAKALDLAISTVATIRDSKEKIKA--SSQIATP 73
KR+R +TL K+++ R E GE + + ++ +ST+ IR K ++ +S +
Sbjct: 14 KRKRVVLTLKEKIDICTRLEKGESRKALMQEYNVGMSTLYDIRAHKAQLLRFFASSDSNK 73
Query: 74 LRASRLTRHRSAVMESMEQLLSLWLEDQSQPNATLSAAIVQEKAE--FDDLQREHGEGSQ 131
R T H + +E ++++L W + +S ++ EKA+ ++ +Q
Sbjct: 74 ALEQRRTLH-TPKLEHLDRVLYEWFLGKRSEGVPVSGPMLIEKAKDFYEQMQ-------L 125
Query: 132 TERFHASQGWLVRFKECHCLPHFKMNSAAPS 162
TE S GWL RFK H + +S S
Sbjct: 126 TEPCVFSGGWLWRFKARHGIKKLDASSEKQS 156
>gi|117938295 jerky isoform b [Homo sapiens]
Length = 556
Score = 46.2 bits (108), Expect = 2e-05
Identities = 39/151 (25%), Positives = 70/151 (46%), Gaps = 12/151 (7%)
Query: 16 KRERKAITLDLKLEVLRRFEAGEKLSQIAKALDLAISTVATIRDSKEKIKA--SSQIATP 73
KR+R +TL K+++ R E GE + + ++ +ST+ IR K ++ +S +
Sbjct: 14 KRKRVVLTLKEKIDICTRLEKGESRKALMQEYNVGMSTLYDIRAHKAQLLRFFASSDSNK 73
Query: 74 LRASRLTRHRSAVMESMEQLLSLWLEDQSQPNATLSAAIVQEKAE--FDDLQREHGEGSQ 131
R T H + +E ++++L W + +S ++ EKA+ ++ +Q
Sbjct: 74 ALEQRRTLH-TPKLEHLDRVLYEWFLGKRSEGVPVSGPMLIEKAKDFYEQMQ-------L 125
Query: 132 TERFHASQGWLVRFKECHCLPHFKMNSAAPS 162
TE S GWL RFK H + +S S
Sbjct: 126 TEPCVFSGGWLWRFKARHGIKKLDASSEKQS 156
>gi|22325392 tigger transposable element derived 7 [Homo sapiens]
Length = 549
Score = 44.7 bits (104), Expect = 5e-05
Identities = 40/163 (24%), Positives = 69/163 (42%), Gaps = 13/163 (7%)
Query: 22 ITLDLKLEVLRRFEAGEKLSQIAKALDLAISTVATIRDSKEKIK--ASSQIATPLRASRL 79
+ L+ K++VL R EAG L + ++ ST I+ +K+ I Q + A +
Sbjct: 10 LNLEEKMKVLSRIEAGRSLKSVMDEFGISKSTFYDIKKNKKLILDFVLKQDMPLVGAEKR 69
Query: 80 TRHRSAVMESMEQLLSLWLEDQSQPNATLSAAIVQEKAEFDDLQREHGEGSQTERFHASQ 139
R A ++ + +W + + + +Q AE R G F AS
Sbjct: 70 KRTTGAKYGDVDDAVYMWYQQKRSAGVPVRGVELQAAAE--RFARCFGRTD----FKAST 123
Query: 140 GWLVRFKECHCLPHFK-----MNSAAPSNKDMYTEMLKSIIEE 177
GWL RF+ H + + K + S+ N + + + L II+E
Sbjct: 124 GWLFRFRNRHAIGNRKGCGEQVLSSVSENVEPFRQKLSMIIKE 166
>gi|21735415 centromere protein B [Homo sapiens]
Length = 599
Score = 42.0 bits (97), Expect = 3e-04
Identities = 36/134 (26%), Positives = 58/134 (43%), Gaps = 9/134 (6%)
Query: 18 ERKAITLDLKLEVLRRFEAGEKL--SQIAKALDLAISTVATIRDSKEKIKASSQIATPLR 75
+R+ +T K +++ E L +IA+ ++ ST++TI +K I AS +
Sbjct: 4 KRRQLTFREKSRIIQEVEENPDLRKGEIARRFNIPPSTLSTILKNKRAILASERKYGVAS 63
Query: 76 ASRLTRHRSAVMESMEQLLSLWLEDQSQPNATLSAAIVQEKAEFDDLQREHGEGSQTERF 135
R T S + +E LL W + + I++EKA E + F
Sbjct: 64 TCRKTNKLSPY-DKLEGLLIAWFQQIRAAGLPVKGIILKEKA------LRIAEELGMDDF 116
Query: 136 HASQGWLVRFKECH 149
AS GWL RF+ H
Sbjct: 117 TASNGWLDRFRRRH 130
>gi|239756639 PREDICTED: similar to hCG1802057 [Homo sapiens]
Length = 86
Score = 36.2 bits (82), Expect = 0.017
Identities = 23/79 (29%), Positives = 41/79 (51%), Gaps = 3/79 (3%)
Query: 27 KLEVLRRFEAGEKLSQIAKALDLAISTVATIRDSKEKIKASSQIATPLRA---SRLTRHR 83
K+ VL + ++G S + L++ ST+ I+ +++I S + A P A S +
Sbjct: 6 KVRVLDKLQSGMSYSAVGHELNVNESTIRYIKKKEKEIHRSVREAAPDSAEVTSIVRDEA 65
Query: 84 SAVMESMEQLLSLWLEDQS 102
ME ME+ L+LW+ + S
Sbjct: 66 MTKMEKMEKRLNLWIHEMS 84
>gi|239751125 PREDICTED: hypothetical protein XP_002347719 [Homo
sapiens]
Length = 86
Score = 36.2 bits (82), Expect = 0.017
Identities = 23/79 (29%), Positives = 41/79 (51%), Gaps = 3/79 (3%)
Query: 27 KLEVLRRFEAGEKLSQIAKALDLAISTVATIRDSKEKIKASSQIATPLRA---SRLTRHR 83
K+ VL + ++G S + L++ ST+ I+ +++I S + A P A S +
Sbjct: 6 KVRVLDKLQSGMSYSAVGHELNVNESTIRYIKKKEKEIHRSVREAAPDSAEVTSIVRDEA 65
Query: 84 SAVMESMEQLLSLWLEDQS 102
ME ME+ L+LW+ + S
Sbjct: 66 MTKMEKMEKRLNLWIHEMS 84
>gi|239745616 PREDICTED: hypothetical protein XP_002344143 [Homo
sapiens]
Length = 86
Score = 36.2 bits (82), Expect = 0.017
Identities = 23/79 (29%), Positives = 41/79 (51%), Gaps = 3/79 (3%)
Query: 27 KLEVLRRFEAGEKLSQIAKALDLAISTVATIRDSKEKIKASSQIATPLRA---SRLTRHR 83
K+ VL + ++G S + L++ ST+ I+ +++I S + A P A S +
Sbjct: 6 KVRVLDKLQSGMSYSAVGHELNVNESTIRYIKKKEKEIHRSVREAAPDSAEVTSIVRDEA 65
Query: 84 SAVMESMEQLLSLWLEDQS 102
ME ME+ L+LW+ + S
Sbjct: 66 MTKMEKMEKRLNLWIHEMS 84
>gi|144922631 tigger transposable element derived 5 [Homo sapiens]
Length = 593
Score = 35.4 bits (80), Expect = 0.029
Identities = 30/136 (22%), Positives = 58/136 (42%), Gaps = 14/136 (10%)
Query: 19 RKAITLDLKLEVLRRFEAGEKLSQIAKALDLAISTVATIRDSKEKIK-----ASSQIATP 73
RKA ++ KL+ + R + GE+ + + + + T+ + K++ ++ T
Sbjct: 4 RKAYSIKDKLQAIERVKGGERQASVCRDFGVPGGTLRGWLKDEPKLRWFLEQLGGEVGTQ 63
Query: 74 LRASRLTRHRSAVMESMEQLLSLWLEDQSQPNATLSAAIVQEKAEFDDLQREHGEGSQTE 133
+ RL E +++ + W Q LS ++Q +AE Q E +
Sbjct: 64 RKKMRLANE-----EEIDRAVYAWFLALRQHGVPLSGPLIQAQAEAFARQIYGPECT--- 115
Query: 134 RFHASQGWLVRFKECH 149
F AS GW R+++ H
Sbjct: 116 -FKASHGWFWRWQKRH 130
>gi|126723390 ankyrin repeat domain 24 [Homo sapiens]
Length = 1146
Score = 31.6 bits (70), Expect = 0.42
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 7/62 (11%)
Query: 79 LTRHRSAVMESMEQLLSLWLEDQSQPNATLSAAIV------QEKAEFDDLQREHGEGSQT 132
LTR +ME + Q+L + +D++Q A ++ +AEFD L+R+H E Q
Sbjct: 451 LTRQNQELMEKV-QILENFEKDETQMEVEALAEVIPLALYDSLRAEFDQLRRQHAEALQA 509
Query: 133 ER 134
R
Sbjct: 510 LR 511
>gi|212549538 DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 12 [Homo
sapiens]
Length = 906
Score = 31.2 bits (69), Expect = 0.54
Identities = 33/138 (23%), Positives = 62/138 (44%), Gaps = 10/138 (7%)
Query: 2 PGERPTDATVIPSAKRERKAITLDLKLEVLRRFEAGEKLSQIAKALDLAISTVATIRDSK 61
P P T K ER + LK E RR + E+L Q+ + L + +R +
Sbjct: 107 PAGEPAWVTQFVQKKEERDLVNR-LKAEQARRKQREERLQQLQHRVQLKYA-AKRLRQEE 164
Query: 62 EKIKASSQIATPLRASRLTRHRSAVMESMEQLLSLWLEDQSQPNATLSAAIVQEKAEFDD 121
E+ + +++ + + R +ES E+ L L E +S +++ + +++ DD
Sbjct: 165 EERENLLRLSREMLETGPEAERPEQLESGEEELVL-AEYESDEEKKVASGVDEDE---DD 220
Query: 122 LQREHGEGSQTERFHASQ 139
L+ EH T+ +H S+
Sbjct: 221 LEEEH----ITKIYHCSR 234
>gi|18959212 GS homeobox 2 [Homo sapiens]
Length = 304
Score = 30.8 bits (68), Expect = 0.71
Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Query: 7 TDATVIPSAKRERKAITLDLKLEVLRRFEAGEKLSQIAKALDLAISTVATIRDSKEKI 64
+DA+ +P+ KR R A T LE+ R F + LS++ + + I+T + + + KI
Sbjct: 194 SDASQVPNGKRMRTAFTSTQLLELEREFSSNMYLSRLRR---IEIATYLNLSEKQVKI 248
>gi|47059046 dachsous 2 isoform 1 [Homo sapiens]
Length = 2916
Score = 30.8 bits (68), Expect = 0.71
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 4/58 (6%)
Query: 125 EHGEGSQTERFHASQGWLVRFKECHCLPHFKMNSAAPSNKD----MYTEMLKSIIEEG 178
E E + ++F AS+GW +RFK L + K+ A S Y L I+ EG
Sbjct: 270 ERDEEAAEKKFEASRGWFMRFKGRRHLHYLKVQDEAASADGEAAARYVANLAKILGEG 327
>gi|21361348 UTP14, U3 small nucleolar ribonucleoprotein, homolog A
[Homo sapiens]
Length = 771
Score = 30.0 bits (66), Expect = 1.2
Identities = 13/47 (27%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Query: 52 STVATIRDSKEKIKASSQIATPLRASRLTR-HRSAVMESMEQLLSLW 97
S++AT++ ++K+ + PL + R HR Q+LS W
Sbjct: 98 SSLATVKKQLSRVKSKKTVELPLNKEEIERIHREVAFNKTAQVLSKW 144
>gi|51871374 UTP14, U3 small nucleolar ribonucleoprotein, homolog C
[Homo sapiens]
Length = 766
Score = 30.0 bits (66), Expect = 1.2
Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Query: 36 AGEKLSQIAKALD--LAISTVATIRDSKEKIKASSQIATPLRASRLTR-HRSAVMESMEQ 92
+GEKL +A L+ S++AT++ ++K+ + PL ++ + HR Q
Sbjct: 80 SGEKLG-LADLLEPVKTSSSLATVKKQLNRVKSKKVVELPLNKEKIEQIHREVAFSKTSQ 138
Query: 93 LLSLW 97
+LS W
Sbjct: 139 VLSKW 143
>gi|154800469 lung cancer-related protein 8 isoform c [Homo sapiens]
Length = 583
Score = 30.0 bits (66), Expect = 1.2
Identities = 16/64 (25%), Positives = 34/64 (53%), Gaps = 3/64 (4%)
Query: 6 PTDATVIPSAKRERKAITLDLKLEVLRRFEAGEKLSQIAKALDLAISTVATIRDSKEKIK 65
PTD TV + ++ +++ L LK+ L + + EK K L L + T + ++++ +
Sbjct: 262 PTDVTVTETPEKNTESLILSLKMSSLGKIQVMEKQE---KGLTLGVETCGSKGNAEKSMS 318
Query: 66 ASSQ 69
A+ +
Sbjct: 319 ATEK 322
>gi|154800467 lung cancer-related protein 8 isoform b [Homo sapiens]
Length = 573
Score = 30.0 bits (66), Expect = 1.2
Identities = 16/64 (25%), Positives = 34/64 (53%), Gaps = 3/64 (4%)
Query: 6 PTDATVIPSAKRERKAITLDLKLEVLRRFEAGEKLSQIAKALDLAISTVATIRDSKEKIK 65
PTD TV + ++ +++ L LK+ L + + EK K L L + T + ++++ +
Sbjct: 262 PTDVTVTETPEKNTESLILSLKMSSLGKIQVMEKQE---KGLTLGVETCGSKGNAEKSMS 318
Query: 66 ASSQ 69
A+ +
Sbjct: 319 ATEK 322
>gi|21361664 lung cancer-related protein 8 isoform a [Homo sapiens]
Length = 609
Score = 30.0 bits (66), Expect = 1.2
Identities = 16/64 (25%), Positives = 34/64 (53%), Gaps = 3/64 (4%)
Query: 6 PTDATVIPSAKRERKAITLDLKLEVLRRFEAGEKLSQIAKALDLAISTVATIRDSKEKIK 65
PTD TV + ++ +++ L LK+ L + + EK K L L + T + ++++ +
Sbjct: 262 PTDVTVTETPEKNTESLILSLKMSSLGKIQVMEKQE---KGLTLGVETCGSKGNAEKSMS 318
Query: 66 ASSQ 69
A+ +
Sbjct: 319 ATEK 322
>gi|17017963 forkhead box P2 isoform I [Homo sapiens]
Length = 715
Score = 29.6 bits (65), Expect = 1.6
Identities = 22/125 (17%), Positives = 53/125 (42%)
Query: 15 AKRERKAITLDLKLEVLRRFEAGEKLSQIAKALDLAISTVATIRDSKEKIKASSQIATPL 74
A + + + L + L+ ++ +K + + +A+ T I + + Q+ +P
Sbjct: 57 ALQAARQLLLQQQTSGLKSPKSSDKQRPLQVPVSVAMMTPQVITPQQMQQILQQQVLSPQ 116
Query: 75 RASRLTRHRSAVMESMEQLLSLWLEDQSQPNATLSAAIVQEKAEFDDLQREHGEGSQTER 134
+ L + + AVM +QL + + Q Q + L Q++ + Q++ + Q ++
Sbjct: 117 QLQALLQQQQAVMLQQQQLQEFYKKQQEQLHLQLLQQQQQQQQQQQQQQQQQQQQQQQQQ 176
Query: 135 FHASQ 139
Q
Sbjct: 177 QQQQQ 181
>gi|100913204 DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11
isoform 2 [Homo sapiens]
Length = 856
Score = 29.6 bits (65), Expect = 1.6
Identities = 30/125 (24%), Positives = 56/125 (44%), Gaps = 6/125 (4%)
Query: 2 PGERPTDATVIPSAKRERKAITLDLKLEVLRRFEAGEKLSQIAKALDLAISTVATIRDSK 61
P P T K ER + LK E RR + E+L Q+ + L + +R +
Sbjct: 107 PAGEPAWVTQFVQKKEERDLVDR-LKAEQARRKQREERLQQLQHRVQLKYA-AKRLRQEE 164
Query: 62 EKIKASSQIATPLRASRLTRHRSAVMESMEQLLSLWLEDQSQPNATLSAAIVQEKAEFDD 121
E+ + +++ + + R +ES E+ L L E +S +++ + +++ DD
Sbjct: 165 EERENLLRLSREMLETGPEAERLEQLESGEEELVL-AEYESDEEKKVASRVDEDE---DD 220
Query: 122 LQREH 126
L+ EH
Sbjct: 221 LEEEH 225
>gi|100913202 DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11
isoform 1 [Homo sapiens]
Length = 906
Score = 29.6 bits (65), Expect = 1.6
Identities = 30/125 (24%), Positives = 56/125 (44%), Gaps = 6/125 (4%)
Query: 2 PGERPTDATVIPSAKRERKAITLDLKLEVLRRFEAGEKLSQIAKALDLAISTVATIRDSK 61
P P T K ER + LK E RR + E+L Q+ + L + +R +
Sbjct: 107 PAGEPAWVTQFVQKKEERDLVDR-LKAEQARRKQREERLQQLQHRVQLKYA-AKRLRQEE 164
Query: 62 EKIKASSQIATPLRASRLTRHRSAVMESMEQLLSLWLEDQSQPNATLSAAIVQEKAEFDD 121
E+ + +++ + + R +ES E+ L L E +S +++ + +++ DD
Sbjct: 165 EERENLLRLSREMLETGPEAERLEQLESGEEELVL-AEYESDEEKKVASRVDEDE---DD 220
Query: 122 LQREH 126
L+ EH
Sbjct: 221 LEEEH 225
>gi|132566527 DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11
isoform 3 [Homo sapiens]
Length = 970
Score = 29.6 bits (65), Expect = 1.6
Identities = 30/125 (24%), Positives = 56/125 (44%), Gaps = 6/125 (4%)
Query: 2 PGERPTDATVIPSAKRERKAITLDLKLEVLRRFEAGEKLSQIAKALDLAISTVATIRDSK 61
P P T K ER + LK E RR + E+L Q+ + L + +R +
Sbjct: 107 PAGEPAWVTQFVQKKEERDLVDR-LKAEQARRKQREERLQQLQHRVQLKYA-AKRLRQEE 164
Query: 62 EKIKASSQIATPLRASRLTRHRSAVMESMEQLLSLWLEDQSQPNATLSAAIVQEKAEFDD 121
E+ + +++ + + R +ES E+ L L E +S +++ + +++ DD
Sbjct: 165 EERENLLRLSREMLETGPEAERLEQLESGEEELVL-AEYESDEEKKVASRVDEDE---DD 220
Query: 122 LQREH 126
L+ EH
Sbjct: 221 LEEEH 225
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.126 0.348
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,244,537
Number of Sequences: 37866
Number of extensions: 220876
Number of successful extensions: 810
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 43
Number of HSP's that attempted gapping in prelim test: 772
Number of HSP's gapped (non-prelim): 65
length of query: 187
length of database: 18,247,518
effective HSP length: 96
effective length of query: 91
effective length of database: 14,612,382
effective search space: 1329726762
effective search space used: 1329726762
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.