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Search of human proteins with 4885653
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|4885653 vascular endothelial growth factor C preproprotein
[Homo sapiens]
(419 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|4885653 vascular endothelial growth factor C preproprotein [H... 904 0.0
gi|4758378 vascular endothelial growth factor D preproprotein [H... 252 4e-67
gi|76781480 vascular endothelial growth factor A isoform a precu... 81 2e-15
gi|76781487 vascular endothelial growth factor A isoform g precu... 80 4e-15
gi|76781483 vascular endothelial growth factor A isoform d precu... 79 8e-15
gi|76781482 vascular endothelial growth factor A isoform c precu... 77 3e-14
gi|76781481 vascular endothelial growth factor A isoform b precu... 77 3e-14
gi|76781485 vascular endothelial growth factor A isoform f precu... 75 8e-14
gi|76781484 vascular endothelial growth factor A isoform e precu... 75 8e-14
gi|20149543 placental growth factor, vascular endothelial growth... 61 2e-09
gi|4507887 vascular endothelial growth factor B [Homo sapiens] 59 8e-09
gi|15451786 platelet-derived growth factor beta isoform 2 prepro... 51 2e-06
gi|4505681 platelet-derived growth factor beta isoform 1 preprop... 51 2e-06
gi|33598931 scavenger receptor class F, member 1 isoform 3 precu... 48 2e-05
gi|33598929 scavenger receptor class F, member 1 isoform 1 precu... 48 2e-05
gi|145309306 scavenger receptor class F, member 1 isoform 5 prec... 48 2e-05
gi|24586659 scavenger receptor class F, member 2 isoform 1 [Homo... 47 2e-05
gi|33598937 scavenger receptor class F, member 2 isoform 2 [Homo... 47 2e-05
gi|9994187 platelet-derived growth factor C precursor [Homo sapi... 44 3e-04
gi|12383051 transmembrane protein with EGF-like and two follista... 43 6e-04
gi|15208656 platelet-derived growth factor alpha isoform 2 prepr... 43 6e-04
gi|77695917 platelet-derived growth factor alpha isoform 1 prepr... 43 6e-04
gi|10190748 CEGP1 protein [Homo sapiens] 42 0.001
gi|13376808 platelet derived growth factor D isoform 1 precursor... 41 0.002
gi|15451921 platelet derived growth factor D isoform 2 precursor... 41 0.002
gi|66346695 fibrillin 2 precursor [Homo sapiens] 40 0.003
gi|89191868 von Willebrand factor preproprotein [Homo sapiens] 40 0.005
gi|188528648 tenascin XB isoform 1 precursor [Homo sapiens] 40 0.005
gi|110347437 latent transforming growth factor beta binding prot... 39 0.007
gi|110347412 latent transforming growth factor beta binding prot... 39 0.007
>gi|4885653 vascular endothelial growth factor C preproprotein [Homo
sapiens]
Length = 419
Score = 904 bits (2336), Expect = 0.0
Identities = 419/419 (100%), Positives = 419/419 (100%)
Query: 1 MHLLGFFSVACSLLAAALLPGPREAPAAAAAFESGLDLSDAEPDAGEATAYASKDLEEQL 60
MHLLGFFSVACSLLAAALLPGPREAPAAAAAFESGLDLSDAEPDAGEATAYASKDLEEQL
Sbjct: 1 MHLLGFFSVACSLLAAALLPGPREAPAAAAAFESGLDLSDAEPDAGEATAYASKDLEEQL 60
Query: 61 RSVSSVDELMTVLYPEYWKMYKCQLRKGGWQHNREQANLNSRTEETIKFAAAHYNTEILK 120
RSVSSVDELMTVLYPEYWKMYKCQLRKGGWQHNREQANLNSRTEETIKFAAAHYNTEILK
Sbjct: 61 RSVSSVDELMTVLYPEYWKMYKCQLRKGGWQHNREQANLNSRTEETIKFAAAHYNTEILK 120
Query: 121 SIDNEWRKTQCMPREVCIDVGKEFGVATNTFFKPPCVSVYRCGGCCNSEGLQCMNTSTSY 180
SIDNEWRKTQCMPREVCIDVGKEFGVATNTFFKPPCVSVYRCGGCCNSEGLQCMNTSTSY
Sbjct: 121 SIDNEWRKTQCMPREVCIDVGKEFGVATNTFFKPPCVSVYRCGGCCNSEGLQCMNTSTSY 180
Query: 181 LSKTLFEITVPLSQGPKPVTISFANHTSCRCMSKLDVYRQVHSIIRRSLPATLPQCQAAN 240
LSKTLFEITVPLSQGPKPVTISFANHTSCRCMSKLDVYRQVHSIIRRSLPATLPQCQAAN
Sbjct: 181 LSKTLFEITVPLSQGPKPVTISFANHTSCRCMSKLDVYRQVHSIIRRSLPATLPQCQAAN 240
Query: 241 KTCPTNYMWNNHICRCLAQEDFMFSSDAGDDSTDGFHDICGPNKELDEETCQCVCRAGLR 300
KTCPTNYMWNNHICRCLAQEDFMFSSDAGDDSTDGFHDICGPNKELDEETCQCVCRAGLR
Sbjct: 241 KTCPTNYMWNNHICRCLAQEDFMFSSDAGDDSTDGFHDICGPNKELDEETCQCVCRAGLR 300
Query: 301 PASCGPHKELDRNSCQCVCKNKLFPSQCGANREFDENTCQCVCKRTCPRNQPLNPGKCAC 360
PASCGPHKELDRNSCQCVCKNKLFPSQCGANREFDENTCQCVCKRTCPRNQPLNPGKCAC
Sbjct: 301 PASCGPHKELDRNSCQCVCKNKLFPSQCGANREFDENTCQCVCKRTCPRNQPLNPGKCAC 360
Query: 361 ECTESPQKCLLKGKKFHHQTCSCYRRPCTNRQKACEPGFSYSEEVCRCVPSYWKRPQMS 419
ECTESPQKCLLKGKKFHHQTCSCYRRPCTNRQKACEPGFSYSEEVCRCVPSYWKRPQMS
Sbjct: 361 ECTESPQKCLLKGKKFHHQTCSCYRRPCTNRQKACEPGFSYSEEVCRCVPSYWKRPQMS 419
>gi|4758378 vascular endothelial growth factor D preproprotein [Homo
sapiens]
Length = 354
Score = 252 bits (644), Expect = 4e-67
Identities = 135/358 (37%), Positives = 190/358 (53%), Gaps = 67/358 (18%)
Query: 57 EEQLRSVSSVDELMTVLYPEYWKMYKCQLRKGGWQHNREQANLNSRTEETIKFAAAHYNT 116
E+Q+R+ SS++EL+ + + E WK+++C+LR + + S + + +FAA Y+
Sbjct: 41 EQQIRAASSLEELLRITHSEDWKLWRCRLRLKSFT----SMDSRSASHRSTRFAATFYDI 96
Query: 117 EILKSIDNEWRKTQCMPREVCIDVGKEFGVATNTFFKPPCVSVYRCGGCCNSEGLQCMNT 176
E LK ID EW++TQC PRE C++V E G +TNTFFKPPCV+V+RCGGCCN E L CMNT
Sbjct: 97 ETLKVIDEEWQRTQCSPRETCVEVASELGKSTNTFFKPPCVNVFRCGGCCNEESLICMNT 156
Query: 177 STSYLSKTLFEITVPLSQGPKPVTISFANHTSCRCMSKLDVYRQVHSIIRRSLPATLPQ- 235
STSY+SK LFEI+VPL+ P+ V + ANHT C+C+ R +SIIRRS+ +P+
Sbjct: 157 STSYISKQLFEISVPLTSVPELVPVKVANHTGCKCLPTAP--RHPYSIIRRSIQ--IPEE 212
Query: 236 --CQAANKTCPTNYMWNNHICRCLAQEDFMFSSDAGDDSTDGFHDICGPNKELDEETCQC 293
C + K CP + +W D C+C
Sbjct: 213 DRCSHSKKLCPIDMLW-------------------------------------DSNKCKC 235
Query: 294 VCRAGLRPASCGPHKELDRNSCQCVCKNKLFPSQCGANREFDENTCQCVCKRTCPRNQPL 353
V + A H L P+ CG + FDE+ C+CVCK CP++
Sbjct: 236 VLQEENPLAGTEDHSHLQE------------PALCGPHMMFDEDRCECVCKTPCPKDLIQ 283
Query: 354 NPGKCAC-ECTESPQKCLLKGKKFHHQTCSC------YRRPCTNRQKACEPGFSYSEE 404
+P C+C EC ES + C K K FH TCSC + RPC + + AC + +E
Sbjct: 284 HPKNCSCFECKESLETCCQKHKLFHPDTCSCEDRCPFHTRPCASGKTACAKHCRFPKE 341
>gi|76781480 vascular endothelial growth factor A isoform a
precursor [Homo sapiens]
Length = 412
Score = 81.3 bits (199), Expect = 2e-15
Identities = 64/227 (28%), Positives = 95/227 (41%), Gaps = 40/227 (17%)
Query: 117 EILKSIDNEWRKTQCMPREVCIDVGKEFGVATNTFFKPPCVSVYRCGGCCNSEGLQCMNT 176
E++K +D ++++ C P E +D+ +E+ FKP CV + RCGGCCN EGL+C+ T
Sbjct: 219 EVVKFMD-VYQRSYCHPIETLVDIFQEYPDEIEYIFKPSCVPLMRCGGCCNDEGLECVPT 277
Query: 177 STSYLSKTLFEITVPLSQGPKPVTISFANHTSCRCMSKLDVYRQVHSIIRRSLPATLPQC 236
S ++ + I QG +SF H C C K D RQ +R +
Sbjct: 278 EESNITMQIMRIKP--HQGQHIGEMSFLQHNKCECRPKKDRARQEKKSVRGK-----GKG 330
Query: 237 QAANKTCPTNYMWNNHI-CRCLAQEDFMFSSDAGDDSTDGFHDICGPNKELDEETCQCVC 295
Q + W+ ++ RC S G H CGP E +
Sbjct: 331 QKRKRKKSRYKSWSVYVGARCCLM----------PWSLPGPHP-CGPCSERRKHLF---- 375
Query: 296 RAGLRPASCGPHKELDRNSCQCVCKNKLFPSQCGANR-EFDENTCQC 341
D +C+C CKN S+C A + E +E TC+C
Sbjct: 376 -------------VQDPQTCKCSCKNT--DSRCKARQLELNERTCRC 407
>gi|76781487 vascular endothelial growth factor A isoform g
precursor [Homo sapiens]
Length = 371
Score = 79.7 bits (195), Expect = 4e-15
Identities = 50/156 (32%), Positives = 75/156 (48%), Gaps = 14/156 (8%)
Query: 117 EILKSIDNEWRKTQCMPREVCIDVGKEFGVATNTFFKPPCVSVYRCGGCCNSEGLQCMNT 176
E++K +D ++++ C P E +D+ +E+ FKP CV + RCGGCCN EGL+C+ T
Sbjct: 219 EVVKFMD-VYQRSYCHPIETLVDIFQEYPDEIEYIFKPSCVPLMRCGGCCNDEGLECVPT 277
Query: 177 STSYLSKTLFEITVPLSQGPKPVTISFANHTSCRCMSKLDVYRQVH-----SIIRRSLPA 231
S ++ + I QG +SF H C C K D RQ + S R+ L
Sbjct: 278 EESNITMQIMRIKP--HQGQHIGEMSFLQHNKCECRPKKDRARQENPCGPCSERRKHLFV 335
Query: 232 TLPQ-----CQAANKTCPTNYM-WNNHICRCLAQED 261
PQ C+ + C + N CR L ++D
Sbjct: 336 QDPQTCKCSCKNTDSRCKARQLELNERTCRSLTRKD 371
Score = 30.0 bits (66), Expect = 4.1
Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 14/66 (21%)
Query: 292 QCVCRAGLRPAS----CGPHKEL-------DRNSCQCVCKNKLFPSQCGANR-EFDENTC 339
+C CR A CGP E D +C+C CKN S+C A + E +E TC
Sbjct: 307 KCECRPKKDRARQENPCGPCSERRKHLFVQDPQTCKCSCKNT--DSRCKARQLELNERTC 364
Query: 340 QCVCKR 345
+ + ++
Sbjct: 365 RSLTRK 370
>gi|76781483 vascular endothelial growth factor A isoform d
precursor [Homo sapiens]
Length = 371
Score = 79.0 bits (193), Expect = 8e-15
Identities = 49/151 (32%), Positives = 72/151 (47%), Gaps = 14/151 (9%)
Query: 117 EILKSIDNEWRKTQCMPREVCIDVGKEFGVATNTFFKPPCVSVYRCGGCCNSEGLQCMNT 176
E++K +D ++++ C P E +D+ +E+ FKP CV + RCGGCCN EGL+C+ T
Sbjct: 219 EVVKFMD-VYQRSYCHPIETLVDIFQEYPDEIEYIFKPSCVPLMRCGGCCNDEGLECVPT 277
Query: 177 STSYLSKTLFEITVPLSQGPKPVTISFANHTSCRCMSKLDVYRQVH-----SIIRRSLPA 231
S ++ + I QG +SF H C C K D RQ + S R+ L
Sbjct: 278 EESNITMQIMRIKP--HQGQHIGEMSFLQHNKCECRPKKDRARQENPCGPCSERRKHLFV 335
Query: 232 TLPQ-----CQAANKTCPTNYM-WNNHICRC 256
PQ C+ + C + N CRC
Sbjct: 336 QDPQTCKCSCKNTDSRCKARQLELNERTCRC 366
Score = 31.2 bits (69), Expect = 1.8
Identities = 18/74 (24%), Positives = 27/74 (36%), Gaps = 10/74 (13%)
Query: 310 LDRNSCQCVCKNKLFPSQCGANREFDENTCQCVCKRTCPRNQPLNPGKCACECTESPQKC 369
L N C+C K +R EN C C +P C C C + +C
Sbjct: 303 LQHNKCECRPKK---------DRARQENPCG-PCSERRKHLFVQDPQTCKCSCKNTDSRC 352
Query: 370 LLKGKKFHHQTCSC 383
+ + + +TC C
Sbjct: 353 KARQLELNERTCRC 366
>gi|76781482 vascular endothelial growth factor A isoform c
precursor [Homo sapiens]
Length = 389
Score = 77.0 bits (188), Expect = 3e-14
Identities = 53/184 (28%), Positives = 82/184 (44%), Gaps = 25/184 (13%)
Query: 117 EILKSIDNEWRKTQCMPREVCIDVGKEFGVATNTFFKPPCVSVYRCGGCCNSEGLQCMNT 176
E++K +D ++++ C P E +D+ +E+ FKP CV + RCGGCCN EGL+C+ T
Sbjct: 219 EVVKFMD-VYQRSYCHPIETLVDIFQEYPDEIEYIFKPSCVPLMRCGGCCNDEGLECVPT 277
Query: 177 STSYLSKTLFEITVPLSQGPKPVTISFANHTSCRCMSKLDVYRQVHSIIR-------RSL 229
S ++ + I QG +SF H C C K D RQ +R R
Sbjct: 278 EESNITMQIMRIKP--HQGQHIGEMSFLQHNKCECRPKKDRARQEKKSVRGKGKGQKRKR 335
Query: 230 PATLPQCQAANKTCPTNYMWNNHICRCLAQEDFMFSSDAGDDSTDGFHDICGPNKELDEE 289
+ P C ++ ++ + C+C S DS + EL+E
Sbjct: 336 KKSRP-CGPCSERRKHLFVQDPQTCKC---------SCKNTDSRCKARQL-----ELNER 380
Query: 290 TCQC 293
TC+C
Sbjct: 381 TCRC 384
Score = 32.0 bits (71), Expect = 1.1
Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 10/46 (21%)
Query: 304 CGPHKEL-------DRNSCQCVCKNKLFPSQCGANR-EFDENTCQC 341
CGP E D +C+C CKN S+C A + E +E TC+C
Sbjct: 341 CGPCSERRKHLFVQDPQTCKCSCKNT--DSRCKARQLELNERTCRC 384
>gi|76781481 vascular endothelial growth factor A isoform b
precursor [Homo sapiens]
Length = 395
Score = 77.0 bits (188), Expect = 3e-14
Identities = 53/202 (26%), Positives = 85/202 (42%), Gaps = 31/202 (15%)
Query: 117 EILKSIDNEWRKTQCMPREVCIDVGKEFGVATNTFFKPPCVSVYRCGGCCNSEGLQCMNT 176
E++K +D ++++ C P E +D+ +E+ FKP CV + RCGGCCN EGL+C+ T
Sbjct: 219 EVVKFMD-VYQRSYCHPIETLVDIFQEYPDEIEYIFKPSCVPLMRCGGCCNDEGLECVPT 277
Query: 177 STSYLSKTLFEITVPLSQGPKPVTISFANHTSCRCMSKLDVYRQVHSIIRRSLPATLPQC 236
S ++ + I QG +SF H C C K D RQ +R +
Sbjct: 278 EESNITMQIMRIKP--HQGQHIGEMSFLQHNKCECRPKKDRARQEKKSVRGK-----GKG 330
Query: 237 QAANKTCPTNYMWNNHICRCLAQEDFMFSSDAGDDSTDGFHDICGPNKELDEETCQCVCR 296
Q + W+ C + +F D +TC+C C+
Sbjct: 331 QKRKRKKSRYKSWSVPCGPCSERRKHLFVQ--------------------DPQTCKCSCK 370
Query: 297 AGLRPASCGPHK-ELDRNSCQC 317
+ C + EL+ +C+C
Sbjct: 371 N--TDSRCKARQLELNERTCRC 390
Score = 32.0 bits (71), Expect = 1.1
Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 10/46 (21%)
Query: 304 CGPHKEL-------DRNSCQCVCKNKLFPSQCGANR-EFDENTCQC 341
CGP E D +C+C CKN S+C A + E +E TC+C
Sbjct: 347 CGPCSERRKHLFVQDPQTCKCSCKNT--DSRCKARQLELNERTCRC 390
>gi|76781485 vascular endothelial growth factor A isoform f
precursor [Homo sapiens]
Length = 327
Score = 75.5 bits (184), Expect = 8e-14
Identities = 38/104 (36%), Positives = 56/104 (53%), Gaps = 3/104 (2%)
Query: 117 EILKSIDNEWRKTQCMPREVCIDVGKEFGVATNTFFKPPCVSVYRCGGCCNSEGLQCMNT 176
E++K +D ++++ C P E +D+ +E+ FKP CV + RCGGCCN EGL+C+ T
Sbjct: 219 EVVKFMD-VYQRSYCHPIETLVDIFQEYPDEIEYIFKPSCVPLMRCGGCCNDEGLECVPT 277
Query: 177 STSYLSKTLFEITVPLSQGPKPVTISFANHTSCRCMSKLDVYRQ 220
S ++ + I QG +SF H C C K D RQ
Sbjct: 278 EESNITMQIMRIKP--HQGQHIGEMSFLQHNKCECRPKKDRARQ 319
>gi|76781484 vascular endothelial growth factor A isoform e
precursor [Homo sapiens]
Length = 354
Score = 75.5 bits (184), Expect = 8e-14
Identities = 38/104 (36%), Positives = 56/104 (53%), Gaps = 3/104 (2%)
Query: 117 EILKSIDNEWRKTQCMPREVCIDVGKEFGVATNTFFKPPCVSVYRCGGCCNSEGLQCMNT 176
E++K +D ++++ C P E +D+ +E+ FKP CV + RCGGCCN EGL+C+ T
Sbjct: 219 EVVKFMD-VYQRSYCHPIETLVDIFQEYPDEIEYIFKPSCVPLMRCGGCCNDEGLECVPT 277
Query: 177 STSYLSKTLFEITVPLSQGPKPVTISFANHTSCRCMSKLDVYRQ 220
S ++ + I QG +SF H C C K D RQ
Sbjct: 278 EESNITMQIMRIKP--HQGQHIGEMSFLQHNKCECRPKKDRARQ 319
>gi|20149543 placental growth factor, vascular endothelial growth
factor-related protein [Homo sapiens]
Length = 170
Score = 61.2 bits (147), Expect = 2e-09
Identities = 28/86 (32%), Positives = 41/86 (47%), Gaps = 2/86 (2%)
Query: 126 WRKTQCMPREVCIDVGKEFGVATNTFFKPPCVSVYRCGGCCNSEGLQCMNTSTSYLSKTL 185
W ++ C E +DV E+ F P CVS+ RC GCC E L C+ T+ ++ L
Sbjct: 47 WGRSYCRALERLVDVVSEYPSEVEHMFSPSCVSLLRCTGCCGDENLHCVPVETANVTMQL 106
Query: 186 FEITVPLSQGPKPVTISFANHTSCRC 211
+I P V ++F+ H C C
Sbjct: 107 LKIR--SGDRPSYVELTFSQHVRCEC 130
>gi|4507887 vascular endothelial growth factor B [Homo sapiens]
Length = 207
Score = 58.9 bits (141), Expect = 8e-09
Identities = 34/104 (32%), Positives = 49/104 (47%), Gaps = 4/104 (3%)
Query: 111 AAHYNTEILKSIDNEWRKTQCMPREVCIDVGKEFGVATNTFFKPPCVSVYRCGGCCNSEG 170
A + +++ ID R T C PREV + + E P CV+V RCGGCC +G
Sbjct: 28 APGHQRKVVSWIDVYTRAT-CQPREVVVPLTVELMGTVAKQLVPSCVTVQRCGGCCPDDG 86
Query: 171 LQCMNTSTSYLSKTLFEITVPLSQGPKPVTISFANHTSCRCMSK 214
L+C+ T + + I P SQ + +S H+ C C K
Sbjct: 87 LECVPTGQHQVRMQILMIRYPSSQLGE---MSLEEHSQCECRPK 127
>gi|15451786 platelet-derived growth factor beta isoform 2
preproprotein [Homo sapiens]
Length = 226
Score = 50.8 bits (120), Expect = 2e-06
Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 5/86 (5%)
Query: 130 QCMPREVCIDVGKEFGVATNTFFK--PPCVSVYRCGGCCNSEGLQCMNTSTSYLSKTLFE 187
+C R ++ + TN F PPCV V RC GCCN+ +QC T + +
Sbjct: 81 ECKTRTEVFEISRRLIDRTNANFLVWPPCVEVQRCSGCCNNRNVQCRPTQVQLRPVQVRK 140
Query: 188 ITVPLSQGP--KPVTISFANHTSCRC 211
I + + + P K T++ +H +C+C
Sbjct: 141 IEI-VRKKPIFKKATVTLEDHLACKC 165
>gi|4505681 platelet-derived growth factor beta isoform 1
preproprotein [Homo sapiens]
Length = 241
Score = 50.8 bits (120), Expect = 2e-06
Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 5/86 (5%)
Query: 130 QCMPREVCIDVGKEFGVATNTFFK--PPCVSVYRCGGCCNSEGLQCMNTSTSYLSKTLFE 187
+C R ++ + TN F PPCV V RC GCCN+ +QC T + +
Sbjct: 96 ECKTRTEVFEISRRLIDRTNANFLVWPPCVEVQRCSGCCNNRNVQCRPTQVQLRPVQVRK 155
Query: 188 ITVPLSQGP--KPVTISFANHTSCRC 211
I + + + P K T++ +H +C+C
Sbjct: 156 IEI-VRKKPIFKKATVTLEDHLACKC 180
>gi|33598931 scavenger receptor class F, member 1 isoform 3
precursor [Homo sapiens]
Length = 569
Score = 47.8 bits (112), Expect = 2e-05
Identities = 37/140 (26%), Positives = 56/140 (40%), Gaps = 28/140 (20%)
Query: 280 CGPNKELDEETCQCVCRA---GLR---PASCGPHKELDRNSCQCVCKNKLFPSQCGANRE 333
C P+ + + T C C+A G R P +CGPH D + C C+ + S C
Sbjct: 105 CHPHGQCEPATGACQCQADRWGARCEFPCACGPHGRCDPATGVCHCEPGWWSSTC----- 159
Query: 334 FDENTCQCVCKRTCPRNQPLNPGKCACECTESPQKCLLKGKKFHHQTCSCYRRPC--TNR 391
CQC T G C C+ ++C + C+C+ PC +
Sbjct: 160 --RRPCQC---NTAAARCEQATGACVCKPGWWGRRCSFR--------CNCHGSPCEQDSG 206
Query: 392 QKACEPGF--SYSEEVCRCV 409
+ AC PG+ ++ C CV
Sbjct: 207 RCACRPGWWGPECQQQCECV 226
Score = 38.5 bits (88), Expect = 0.011
Identities = 33/133 (24%), Positives = 50/133 (37%), Gaps = 21/133 (15%)
Query: 287 DEETCQCVCRAGLRPASCGPHKELDRNSC-----QCVCKNKLFPSQCGANREFDENTCQC 341
++++ +C CR G C E R C +C C ++C + QC
Sbjct: 202 EQDSGRCACRPGWWGPECQQQCECVRGRCSAASGECTCPPGFRGARCELPCPAGSHGVQC 261
Query: 342 V--CKRTCPRNQPLNPGKCACEC-------TESPQKCL--LKGKKFHHQTCSCYR----R 386
C R C N+P +P +CE T+ Q CL G+ Q C
Sbjct: 262 AHSCGR-CKHNEPCSPDTGSCESCEPGWNGTQCQQPCLPGTFGESCEQQCPHCRHGEACE 320
Query: 387 PCTNRQKACEPGF 399
P T + C+PG+
Sbjct: 321 PDTGHCQRCDPGW 333
>gi|33598929 scavenger receptor class F, member 1 isoform 1
precursor [Homo sapiens]
Length = 830
Score = 47.8 bits (112), Expect = 2e-05
Identities = 37/140 (26%), Positives = 56/140 (40%), Gaps = 28/140 (20%)
Query: 280 CGPNKELDEETCQCVCRA---GLR---PASCGPHKELDRNSCQCVCKNKLFPSQCGANRE 333
C P+ + + T C C+A G R P +CGPH D + C C+ + S C
Sbjct: 105 CHPHGQCEPATGACQCQADRWGARCEFPCACGPHGRCDPATGVCHCEPGWWSSTC----- 159
Query: 334 FDENTCQCVCKRTCPRNQPLNPGKCACECTESPQKCLLKGKKFHHQTCSCYRRPC--TNR 391
CQC T G C C+ ++C + C+C+ PC +
Sbjct: 160 --RRPCQC---NTAAARCEQATGACVCKPGWWGRRCSFR--------CNCHGSPCEQDSG 206
Query: 392 QKACEPGF--SYSEEVCRCV 409
+ AC PG+ ++ C CV
Sbjct: 207 RCACRPGWWGPECQQQCECV 226
Score = 38.5 bits (88), Expect = 0.011
Identities = 33/133 (24%), Positives = 50/133 (37%), Gaps = 21/133 (15%)
Query: 287 DEETCQCVCRAGLRPASCGPHKELDRNSC-----QCVCKNKLFPSQCGANREFDENTCQC 341
++++ +C CR G C E R C +C C ++C + QC
Sbjct: 202 EQDSGRCACRPGWWGPECQQQCECVRGRCSAASGECTCPPGFRGARCELPCPAGSHGVQC 261
Query: 342 V--CKRTCPRNQPLNPGKCACEC-------TESPQKCL--LKGKKFHHQTCSCYR----R 386
C R C N+P +P +CE T+ Q CL G+ Q C
Sbjct: 262 AHSCGR-CKHNEPCSPDTGSCESCEPGWNGTQCQQPCLPGTFGESCEQQCPHCRHGEACE 320
Query: 387 PCTNRQKACEPGF 399
P T + C+PG+
Sbjct: 321 PDTGHCQRCDPGW 333
>gi|145309306 scavenger receptor class F, member 1 isoform 5
precursor [Homo sapiens]
Length = 744
Score = 47.8 bits (112), Expect = 2e-05
Identities = 37/140 (26%), Positives = 56/140 (40%), Gaps = 28/140 (20%)
Query: 280 CGPNKELDEETCQCVCRA---GLR---PASCGPHKELDRNSCQCVCKNKLFPSQCGANRE 333
C P+ + + T C C+A G R P +CGPH D + C C+ + S C
Sbjct: 105 CHPHGQCEPATGACQCQADRWGARCEFPCACGPHGRCDPATGVCHCEPGWWSSTC----- 159
Query: 334 FDENTCQCVCKRTCPRNQPLNPGKCACECTESPQKCLLKGKKFHHQTCSCYRRPC--TNR 391
CQC T G C C+ ++C + C+C+ PC +
Sbjct: 160 --RRPCQC---NTAAARCEQATGACVCKPGWWGRRCSFR--------CNCHGSPCEQDSG 206
Query: 392 QKACEPGF--SYSEEVCRCV 409
+ AC PG+ ++ C CV
Sbjct: 207 RCACRPGWWGPECQQQCECV 226
Score = 35.8 bits (81), Expect = 0.074
Identities = 32/127 (25%), Positives = 47/127 (37%), Gaps = 23/127 (18%)
Query: 287 DEETCQCVCRAGLRPASCGPHKELDRNSC-----QCVCKNKLFPSQCGANREFDENTCQC 341
++++ +C CR G C E R C +C C ++C + QC
Sbjct: 202 EQDSGRCACRPGWWGPECQQQCECVRGRCSAASGECTCPPGFRGARCELPCPAGSHGVQC 261
Query: 342 V--CKRTCPRNQPLNPGKCACEC-------TESPQKCL--LKGKKFHHQTCSCYRRPCTN 390
C R C N+P +P +CE T+ Q CL G+ Q C
Sbjct: 262 AHSCGR-CKHNEPCSPDTGSCESCEPGWNGTQCQQPCLPGTFGESCEQQCPHC------R 314
Query: 391 RQKACEP 397
+ACEP
Sbjct: 315 HGEACEP 321
>gi|24586659 scavenger receptor class F, member 2 isoform 1 [Homo
sapiens]
Length = 870
Score = 47.4 bits (111), Expect = 2e-05
Identities = 41/153 (26%), Positives = 60/153 (39%), Gaps = 33/153 (21%)
Query: 280 CGPNKELDEETCQCVCRAGLRPASCGPHKELDRNSCQ-----CVCKNKLFPSQ------C 328
C P+ + ++ T QC C A A C + +C C C+ + +Q C
Sbjct: 128 CHPHGQCEDVTGQCTCHARRWGARCEHACQCQHGTCHPRSGACRCEPGWWGAQCASACYC 187
Query: 329 GANREFDENTCQCVCK-----RTCPRNQPLNPGKCACE---CTESPQKCLLKGKKFH--- 377
A D T C+C R+C NQ CAC C + +C + + F
Sbjct: 188 SATSRCDPQTGACLCHAGWWGRSC-NNQ------CACNSSPCEQQSGRCQCRERTFGARC 240
Query: 378 HQTCSCYRRPC--TNRQKACEPGF--SYSEEVC 406
+ C C+R C + ACEPG+ Y E C
Sbjct: 241 DRYCQCFRGRCHPVDGTCACEPGYRGKYCREPC 273
Score = 43.9 bits (102), Expect = 3e-04
Identities = 37/137 (27%), Positives = 53/137 (38%), Gaps = 29/137 (21%)
Query: 280 CGPNKELDEETCQCVCRAGLRPASCGPHKELDRNSCQ-----CVCKNKLFPSQCGANREF 334
C D +T C+C AG SC + + C+ C C+ + F ++C
Sbjct: 187 CSATSRCDPQTGACLCHAGWWGRSCNNQCACNSSPCEQQSGRCQCRERTFGARC------ 240
Query: 335 DENTCQCVCKRTCPRNQPLNPGKCACE-------CTESPQKCLLKGKKFHHQTCSCY-RR 386
+ CQC R P + G CACE C E P G + C ++
Sbjct: 241 -DRYCQCFRGRCHPVD-----GTCACEPGYRGKYCRE-PCPAGFYGLGCRRRCGQCKGQQ 293
Query: 387 PCT---NRQKACEPGFS 400
PCT R CEPG++
Sbjct: 294 PCTVAEGRCLTCEPGWN 310
Score = 32.0 bits (71), Expect = 1.1
Identities = 25/102 (24%), Positives = 37/102 (36%), Gaps = 25/102 (24%)
Query: 316 QCVCKNKLFPSQCGAN--REFDENTCQCVCKRTC-PRNQPLN-PGKCACECTESPQKCLL 371
+C C++ F + C R+F C+ +C +C P Q + G+C C +C
Sbjct: 97 ECRCRHGYFGANCDTKCPRQFWGPDCKELC--SCHPHGQCEDVTGQCTCHARRWGARC-- 152
Query: 372 KGKKFHHQTCSCYRRPCTNRQKACEPGFSYSEEVCRCVPSYW 413
C C C R AC RC P +W
Sbjct: 153 ------EHACQCQHGTCHPRSGAC-----------RCEPGWW 177
>gi|33598937 scavenger receptor class F, member 2 isoform 2 [Homo
sapiens]
Length = 865
Score = 47.4 bits (111), Expect = 2e-05
Identities = 41/153 (26%), Positives = 60/153 (39%), Gaps = 33/153 (21%)
Query: 280 CGPNKELDEETCQCVCRAGLRPASCGPHKELDRNSCQ-----CVCKNKLFPSQ------C 328
C P+ + ++ T QC C A A C + +C C C+ + +Q C
Sbjct: 128 CHPHGQCEDVTGQCTCHARRWGARCEHACQCQHGTCHPRSGACRCEPGWWGAQCASACYC 187
Query: 329 GANREFDENTCQCVCK-----RTCPRNQPLNPGKCACE---CTESPQKCLLKGKKFH--- 377
A D T C+C R+C NQ CAC C + +C + + F
Sbjct: 188 SATSRCDPQTGACLCHAGWWGRSC-NNQ------CACNSSPCEQQSGRCQCRERTFGARC 240
Query: 378 HQTCSCYRRPC--TNRQKACEPGF--SYSEEVC 406
+ C C+R C + ACEPG+ Y E C
Sbjct: 241 DRYCQCFRGRCHPVDGTCACEPGYRGKYCREPC 273
Score = 43.9 bits (102), Expect = 3e-04
Identities = 37/137 (27%), Positives = 53/137 (38%), Gaps = 29/137 (21%)
Query: 280 CGPNKELDEETCQCVCRAGLRPASCGPHKELDRNSCQ-----CVCKNKLFPSQCGANREF 334
C D +T C+C AG SC + + C+ C C+ + F ++C
Sbjct: 187 CSATSRCDPQTGACLCHAGWWGRSCNNQCACNSSPCEQQSGRCQCRERTFGARC------ 240
Query: 335 DENTCQCVCKRTCPRNQPLNPGKCACE-------CTESPQKCLLKGKKFHHQTCSCY-RR 386
+ CQC R P + G CACE C E P G + C ++
Sbjct: 241 -DRYCQCFRGRCHPVD-----GTCACEPGYRGKYCRE-PCPAGFYGLGCRRRCGQCKGQQ 293
Query: 387 PCT---NRQKACEPGFS 400
PCT R CEPG++
Sbjct: 294 PCTVAEGRCLTCEPGWN 310
Score = 32.0 bits (71), Expect = 1.1
Identities = 25/102 (24%), Positives = 37/102 (36%), Gaps = 25/102 (24%)
Query: 316 QCVCKNKLFPSQCGAN--REFDENTCQCVCKRTC-PRNQPLN-PGKCACECTESPQKCLL 371
+C C++ F + C R+F C+ +C +C P Q + G+C C +C
Sbjct: 97 ECRCRHGYFGANCDTKCPRQFWGPDCKELC--SCHPHGQCEDVTGQCTCHARRWGARC-- 152
Query: 372 KGKKFHHQTCSCYRRPCTNRQKACEPGFSYSEEVCRCVPSYW 413
C C C R AC RC P +W
Sbjct: 153 ------EHACQCQHGTCHPRSGAC-----------RCEPGWW 177
>gi|9994187 platelet-derived growth factor C precursor [Homo
sapiens]
Length = 345
Score = 43.9 bits (102), Expect = 3e-04
Identities = 43/173 (24%), Positives = 71/173 (41%), Gaps = 32/173 (18%)
Query: 56 LEEQLRSVSSVDELMTVLYPEYWKMYKCQLRKGGWQHNREQANLNSRTEETIKFAAAHYN 115
L + + S++++L+ L PE W++ L + WQ +A + R +
Sbjct: 186 LNNAITAFSTLEDLIRYLEPERWQLDLEDLYRPTWQL-LGKAFVFGRKSRVVD------- 237
Query: 116 TEILKSIDNEWRKTQCMPREVCIDVGKEFGVATNTFFKPPCVSVYRCGG---CC--NSEG 170
L + E R C PR + + +E T+T F P C+ V RCGG CC N
Sbjct: 238 ---LNLLTEEVRLYSCTPRNFSVSIREELK-RTDTIFWPGCLLVKRCGGNCACCLHNCNE 293
Query: 171 LQCMNTSTSYLSKTLFEITVPLSQGPKP---------VTISFANHTSCRCMSK 214
QC+ S ++K E+ L PK ++ +H C C+ +
Sbjct: 294 CQCV---PSKVTKKYHEV---LQLRPKTGVRGLHKSLTDVALEHHEECDCVCR 340
>gi|12383051 transmembrane protein with EGF-like and two
follistatin-like domains 2 [Homo sapiens]
Length = 374
Score = 42.7 bits (99), Expect = 6e-04
Identities = 39/167 (23%), Positives = 65/167 (38%), Gaps = 26/167 (15%)
Query: 265 SSDAGDDSTDGFHDICGPNKELDEETCQCVCRAGLRPASCGPHKELDRNSCQCVCKNKLF 324
++DAG S DG H+ G + + TC +C+ G A C E C C F
Sbjct: 136 ATDAGSGSGDGVHEGSGETSQKETSTCD-ICQFG---AECDEDAEDVWCVCNIDCSQTNF 191
Query: 325 PSQCGANREFDENTCQCVCKRTCPRNQP---LNPGKCACECTESPQ-------------- 367
C ++ + +N CQ + + +C + + ++ G+C T + +
Sbjct: 192 NPLCASDGKSYDNACQ-IKEASCQKQEKIEVMSLGRCQDNTTTTTKSEDGHYARTDYAEN 250
Query: 368 -KCLLKGKKFHHQTC-SCYRRPCTNRQKACEPGFSYSEEVCRCVPSY 412
L + + HH C Y C + + CE + E CRC Y
Sbjct: 251 ANKLEESAREHHIPCPEHYNGFCMHGK--CEHSINMQEPSCRCDAGY 295
>gi|15208656 platelet-derived growth factor alpha isoform 2
preproprotein [Homo sapiens]
Length = 196
Score = 42.7 bits (99), Expect = 6e-04
Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Query: 147 ATNTFFKPPCVSVYRCGGCCNSEGLQCMNTSTSYLSKTLFEIT-VPLSQGPKPVTISFAN 205
+ N PPCV V RC GCCN+ ++C + + S + ++ V K V +
Sbjct: 114 SANFLIWPPCVEVKRCTGCCNTSSVKCQPSRVHHRSVKVAKVEYVRKKPKLKEVQVRLEE 173
Query: 206 HTSCRC 211
H C C
Sbjct: 174 HLECAC 179
>gi|77695917 platelet-derived growth factor alpha isoform 1
preproprotein [Homo sapiens]
Length = 211
Score = 42.7 bits (99), Expect = 6e-04
Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Query: 147 ATNTFFKPPCVSVYRCGGCCNSEGLQCMNTSTSYLSKTLFEIT-VPLSQGPKPVTISFAN 205
+ N PPCV V RC GCCN+ ++C + + S + ++ V K V +
Sbjct: 114 SANFLIWPPCVEVKRCTGCCNTSSVKCQPSRVHHRSVKVAKVEYVRKKPKLKEVQVRLEE 173
Query: 206 HTSCRC 211
H C C
Sbjct: 174 HLECAC 179
>gi|10190748 CEGP1 protein [Homo sapiens]
Length = 999
Score = 41.6 bits (96), Expect = 0.001
Identities = 44/156 (28%), Positives = 57/156 (36%), Gaps = 35/156 (22%)
Query: 271 DSTDGFHDIC--GPNKELDEETCQCVCRAGLRPASCGPHKELDRNSCQCVCKNKLFPSQC 328
D++ G H C G +LD +TC+ + R C CKN + C
Sbjct: 299 DTSTGVHCSCPVGFTLQLDGKTCKDIDECQTR-----------NGGCDHFCKNIVGSFDC 347
Query: 329 GANREF----DENTCQ----CVCKRTCPRNQPLNPGKCACECTESPQKCLLKGKKFHH-- 378
G + F DE +CQ C RTC + +PG AC C L G F H
Sbjct: 348 GCKKGFKLLTDEKSCQDVDECSLDRTCDHSCINHPGTFACACNRG---YTLYG--FTHCG 402
Query: 379 --QTCSCYRRPCTNRQKACEPGFSYSEEVCRCVPSY 412
CS C Q+ C E C+C P Y
Sbjct: 403 DTNECSINNGGC---QQVCVNTVGSYE--CQCHPGY 433
>gi|13376808 platelet derived growth factor D isoform 1 precursor
[Homo sapiens]
Length = 370
Score = 41.2 bits (95), Expect = 0.002
Identities = 26/115 (22%), Positives = 52/115 (45%), Gaps = 22/115 (19%)
Query: 56 LEEQLRSVSSVDELMTVLYPEYWKMYKCQLRKGGWQHNREQANLNSRTEETIKFAAAHYN 115
L++++ +V++L+ PE W Q +L + +T ++ Y+
Sbjct: 210 LDKKIAEFDTVEDLLKYFNPESW-----------------QEDLENMYLDTPRYRGRSYH 252
Query: 116 TEILK----SIDNEWRKTQCMPREVCIDVGKEFGVATNTFFKPPCVSVYRCGGCC 166
K ++++ ++ C PR +++ +E +A FF P C+ V RCGG C
Sbjct: 253 DRKSKVDLDRLNDDAKRYSCTPRNYSVNIREELKLANVVFF-PRCLLVQRCGGNC 306
>gi|15451921 platelet derived growth factor D isoform 2 precursor
[Homo sapiens]
Length = 364
Score = 41.2 bits (95), Expect = 0.002
Identities = 26/115 (22%), Positives = 52/115 (45%), Gaps = 22/115 (19%)
Query: 56 LEEQLRSVSSVDELMTVLYPEYWKMYKCQLRKGGWQHNREQANLNSRTEETIKFAAAHYN 115
L++++ +V++L+ PE W Q +L + +T ++ Y+
Sbjct: 204 LDKKIAEFDTVEDLLKYFNPESW-----------------QEDLENMYLDTPRYRGRSYH 246
Query: 116 TEILK----SIDNEWRKTQCMPREVCIDVGKEFGVATNTFFKPPCVSVYRCGGCC 166
K ++++ ++ C PR +++ +E +A FF P C+ V RCGG C
Sbjct: 247 DRKSKVDLDRLNDDAKRYSCTPRNYSVNIREELKLANVVFF-PRCLLVQRCGGNC 300
>gi|66346695 fibrillin 2 precursor [Homo sapiens]
Length = 2912
Score = 40.4 bits (93), Expect = 0.003
Identities = 36/133 (27%), Positives = 57/133 (42%), Gaps = 13/133 (9%)
Query: 293 CVCRAGLR----PASCGPHKELDRNS-CQCVCKNKLFPSQCGANREFDEN--TCQCVCKR 345
C C+ G +C E D N CQ C+N L +CG + + ++ QCV +
Sbjct: 2597 CECQRGFSLDATGLNCEDVDECDGNHRCQHGCQNILGGYRCGCPQGYIQHYQWNQCVDEN 2656
Query: 346 TCPRNQPLNPGKCACECTESPQKCLL-KGKKFHHQTCSCYR-RPCTNRQKACEPGFSYSE 403
C + P G +C T KC G F + +C+ C++ + C G S +E
Sbjct: 2657 EC--SNPNACGSASCYNTLGSYKCACPSGFSFDQFSSACHDVNECSSSKNPCNYGCSNTE 2714
Query: 404 --EVCRCVPSYWK 414
+C C P Y++
Sbjct: 2715 GGYLCGCPPGYYR 2727
Score = 30.4 bits (67), Expect = 3.1
Identities = 24/90 (26%), Positives = 34/90 (37%), Gaps = 15/90 (16%)
Query: 288 EETCQCVCRAGLRPASCGPH-KELD-----RNSCQCVCKNKLFPSQCGANREFDENTCQC 341
E + QC C G G K+LD +++CQ +C N L C F ++ C
Sbjct: 2510 EGSYQCSCPRGYVLQEDGKTCKDLDECQTKQHNCQFLCVNTLGGFTCKCPPGFTQHHTAC 2569
Query: 342 VCKRTCPRNQPL---------NPGKCACEC 362
+ C L PG +CEC
Sbjct: 2570 IDNNECGSQPSLCGAKGICQNTPGSFSCEC 2599
>gi|89191868 von Willebrand factor preproprotein [Homo sapiens]
Length = 2813
Score = 39.7 bits (91), Expect = 0.005
Identities = 36/147 (24%), Positives = 52/147 (35%), Gaps = 37/147 (25%)
Query: 293 CVCRAG----LRPASCGPHKE--------LDRNSCQCVCKNKLFPSQCG-----ANREFD 335
C CR + P SC PH+ D C C C N G A +
Sbjct: 2360 CACRKEECKRVSPPSCPPHRLPTLRKTQCCDEYECACNCVNSTVSCPLGYLASTATNDCG 2419
Query: 336 ENTCQCVCKRTCPRNQPLNP-------GKCACECTESPQKCLLKGKKFHHQTCSCYRRPC 388
T C+ + C + P G C CT+ ++ + C ++PC
Sbjct: 2420 CTTTTCLPDKVCVHRSTIYPVGQFWEEGCDVCTCTD------MEDAVMGLRVAQCSQKPC 2473
Query: 389 TNRQKACEPGFSY---SEEVC-RCVPS 411
+ +C GF+Y E C RC+PS
Sbjct: 2474 ---EDSCRSGFTYVLHEGECCGRCLPS 2497
Score = 35.8 bits (81), Expect = 0.074
Identities = 31/112 (27%), Positives = 41/112 (36%), Gaps = 22/112 (19%)
Query: 287 DEETCQCVCRAGLRPASCGPHKELDRNSCQCVCKNKLFPSQCGANREFDENTCQCVCKRT 346
D C VC AG+ C + C C++ C +CV +
Sbjct: 287 DHSACSPVCPAGMEYRQCV-------SPCARTCQSLHINEMCQE---------RCVDGCS 330
Query: 347 CPRNQPLNPGKCACECTESPQKCLLKGKKFHHQTC---SCYRRPCTNRQKAC 395
CP Q L+ G C E TE P C+ GK++ T C C N Q C
Sbjct: 331 CPEGQLLDEGLCV-ESTECP--CVHSGKRYPPGTSLSRDCNTCICRNSQWIC 379
>gi|188528648 tenascin XB isoform 1 precursor [Homo sapiens]
Length = 4242
Score = 39.7 bits (91), Expect = 0.005
Identities = 32/125 (25%), Positives = 45/125 (36%), Gaps = 21/125 (16%)
Query: 293 CVCRAGLRPASCG----PHKELDRNSCQ---CVCKNKLFPSQCGANREFDENTCQCVCKR 345
CVCRAG C P R C+ CVC CG C R
Sbjct: 233 CVCRAGFSGPDCSQRSCPRGCSQRGRCEGGRCVCDPGYTGDDCGMRS----------CPR 282
Query: 346 TCPRNQPLNPGKCACECTESPQKCLLKGKKFHHQTCSCYRRPCTNRQKACEPGFSYSEEV 405
C + G+C C + + C G + + CS R C + + C+PG++ +
Sbjct: 283 GCSQRGRCENGRCVCNPGYTGEDC---GVRSCPRGCS-QRGRCKDGRCVCDPGYTGEDCG 338
Query: 406 CRCVP 410
R P
Sbjct: 339 TRSCP 343
Score = 36.2 bits (82), Expect = 0.057
Identities = 37/150 (24%), Positives = 52/150 (34%), Gaps = 32/150 (21%)
Query: 289 ETCQCVCRAGLRPASCG----PHKELDRNSCQ---CVCK---------NKLFPSQCGANR 332
E +CVC G CG P R C+ CVC + P CG
Sbjct: 291 ENGRCVCNPGYTGEDCGVRSCPRGCSQRGRCKDGRCVCDPGYTGEDCGTRSCPWDCGEGG 350
Query: 333 EFDENTCQC--------VCKRTCPRN----QPLNPGKCACECTESPQKCLLKGKKFHHQT 380
+ C C RTCPR+ G+C C+ S C G +
Sbjct: 351 RCVDGRCVCWPGYTGEDCSTRTCPRDCRGRGRCEDGECICDTGYSGDDC---GVRSCPGD 407
Query: 381 CSCYRRPCTNRQKACEPGFSYSEEVCRCVP 410
C+ R C + + C PG++ ++ R P
Sbjct: 408 CN-QRGRCEDGRCVCWPGYTGTDCGSRACP 436
Score = 34.3 bits (77), Expect = 0.22
Identities = 30/126 (23%), Positives = 43/126 (34%), Gaps = 21/126 (16%)
Query: 292 QCVCRAGLRPASCG----PHKELDRNSCQ---CVCKNKLFPSQCGANREFDENTCQCVCK 344
+CVC G CG P R C+ CVC CG C
Sbjct: 263 RCVCDPGYTGDDCGMRSCPRGCSQRGRCENGRCVCNPGYTGEDCGVRS----------CP 312
Query: 345 RTCPRNQPLNPGKCACECTESPQKCLLKGKKFHHQTCSCYRRPCTNRQKACEPGFSYSEE 404
R C + G+C C+ + + C G + C R C + + C PG++ +
Sbjct: 313 RGCSQRGRCKDGRCVCDPGYTGEDC---GTRSCPWDCGEGGR-CVDGRCVCWPGYTGEDC 368
Query: 405 VCRCVP 410
R P
Sbjct: 369 STRTCP 374
Score = 29.6 bits (65), Expect = 5.3
Identities = 30/141 (21%), Positives = 39/141 (27%), Gaps = 42/141 (29%)
Query: 293 CVCRAGLR---------PASCGPHKELDRNSCQC-------VCKNKLFPSQCGANREFDE 336
CVC AG P C + C C C + P C +
Sbjct: 450 CVCNAGYSGEDCGVRSCPGDCRGRGRCESGRCMCWPGYTGRDCGTRACPGDCRGRGRCVD 509
Query: 337 NTCQC------------VCKRTCPRNQPLNPGKCACECTESPQKCLLKGKKFHHQTCSC- 383
C C C C + G C C+ S + C T SC
Sbjct: 510 GRCVCNPGFTGEDCGSRRCPGDCRGHGLCEDGVCVCDAGYSGEDC---------STRSCP 560
Query: 384 ----YRRPCTNRQKACEPGFS 400
R C + + CE G+S
Sbjct: 561 GGCRGRGQCLDGRCVCEDGYS 581
>gi|110347437 latent transforming growth factor beta binding protein
4 isoform c [Homo sapiens]
Length = 1557
Score = 39.3 bits (90), Expect = 0.007
Identities = 44/159 (27%), Positives = 60/159 (37%), Gaps = 39/159 (24%)
Query: 285 ELDEETCQCVCRAGLRPASCGPHKELDRNSCQCV--CKNKL-FPSQCGANREFDENTCQC 341
E E + QCVC G +P + G + C+ V C+N L P Q N + QC
Sbjct: 702 ENTEGSFQCVCPMGFQPNTAG-------SECEDVDECENHLACPGQECVN---SPGSFQC 751
Query: 342 VCKRTCPRNQPLNPGKC--ACECTESPQKCLLKGKKFHHQ---TCSC---YRR------P 387
RTCP L+ G+C EC+ C G + + CSC YR P
Sbjct: 752 ---RTCPSGHHLHRGRCTDVDECSSGAPPCGPHGHCTNTEGSFRCSCAPGYRAPSGRPGP 808
Query: 388 CTNRQKACEPGFSY---------SEEVCRCVPSYWKRPQ 417
C + + E F + C C P Y P+
Sbjct: 809 CADVNECLEGDFCFPHGECLNTDGSFACTCAPGYRPGPR 847
Score = 31.2 bits (69), Expect = 1.8
Identities = 23/79 (29%), Positives = 30/79 (37%), Gaps = 11/79 (13%)
Query: 292 QCVCRAGLRPASCGPHKELDRNSCQCVCKNKLFPSQCGANR-EFDENTCQCVCKRTCPRN 350
+CVC AG R ++C E D + C P CG R + + C C
Sbjct: 628 RCVCPAGFRGSAC----EEDVDEC------AQEPPPCGPGRCDNTAGSFHCACPAGFRSR 677
Query: 351 QPLNPGKCACECTESPQKC 369
P P + EC SP C
Sbjct: 678 GPGAPCQDVDECARSPPPC 696
>gi|110347412 latent transforming growth factor beta binding protein
4 isoform b [Homo sapiens]
Length = 1587
Score = 39.3 bits (90), Expect = 0.007
Identities = 44/159 (27%), Positives = 60/159 (37%), Gaps = 39/159 (24%)
Query: 285 ELDEETCQCVCRAGLRPASCGPHKELDRNSCQCV--CKNKL-FPSQCGANREFDENTCQC 341
E E + QCVC G +P + G + C+ V C+N L P Q N + QC
Sbjct: 732 ENTEGSFQCVCPMGFQPNTAG-------SECEDVDECENHLACPGQECVN---SPGSFQC 781
Query: 342 VCKRTCPRNQPLNPGKC--ACECTESPQKCLLKGKKFHHQ---TCSC---YRR------P 387
RTCP L+ G+C EC+ C G + + CSC YR P
Sbjct: 782 ---RTCPSGHHLHRGRCTDVDECSSGAPPCGPHGHCTNTEGSFRCSCAPGYRAPSGRPGP 838
Query: 388 CTNRQKACEPGFSY---------SEEVCRCVPSYWKRPQ 417
C + + E F + C C P Y P+
Sbjct: 839 CADVNECLEGDFCFPHGECLNTDGSFACTCAPGYRPGPR 877
Score = 31.2 bits (69), Expect = 1.8
Identities = 23/79 (29%), Positives = 30/79 (37%), Gaps = 11/79 (13%)
Query: 292 QCVCRAGLRPASCGPHKELDRNSCQCVCKNKLFPSQCGANR-EFDENTCQCVCKRTCPRN 350
+CVC AG R ++C E D + C P CG R + + C C
Sbjct: 658 RCVCPAGFRGSAC----EEDVDEC------AQEPPPCGPGRCDNTAGSFHCACPAGFRSR 707
Query: 351 QPLNPGKCACECTESPQKC 369
P P + EC SP C
Sbjct: 708 GPGAPCQDVDECARSPPPC 726
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.133 0.440
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,389,532
Number of Sequences: 37866
Number of extensions: 975019
Number of successful extensions: 3142
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 130
Number of HSP's that attempted gapping in prelim test: 2893
Number of HSP's gapped (non-prelim): 365
length of query: 419
length of database: 18,247,518
effective HSP length: 105
effective length of query: 314
effective length of database: 14,271,588
effective search space: 4481278632
effective search space used: 4481278632
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.