Guide to the Human Genome
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Name: LOC100292665 Sequence: fasta or formatted (57aa) NCBI GI: 239752914
Description:

PREDICTED: similar to hCG1793647

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             1.8          1           1
 C cysteine            3.5          2           1
 D aspartate           0.0          0           0
 E glutamate           8.8          5           1
 F phenylalanine       0.0          0           0
 G glycine             7.0          4           1
 H histidine           1.8          1           1
 I isoleucine          5.3          3           1
 K lysine             12.3          7           1
 L leucine             7.0          4           1
 M methionine          1.8          1           1
 N asparagine          3.5          2           1
 P proline            15.8          9           1
 Q glutamine           3.5          2           2
 R arginine            0.0          0           0
 S serine              8.8          5           1
 T threonine          12.3          7           1
 V valine              5.3          3           1
 W tryptophan          1.8          1           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to hCG1793647 
LOC100290400          1.000   PREDICTED: hypothetical protein XP_002347531 
SPRR3                 0.374   small proline-rich protein 3 
SPRR3                 0.374   small proline-rich protein 3 
SPRR1A                0.303   small proline-rich protein 1A 
SPRR1B                0.283   small proline-rich protein 1B 
MGAM                  0.071   maltase-glucoamylase 
PRG4                  0.030   proteoglycan 4 isoform D 
PRG4                  0.030   proteoglycan 4 isoform C 
PRG4                  0.030   proteoglycan 4 isoform B 
PRG4                  0.030   proteoglycan 4 isoform A 
LOC100288229          0.030   PREDICTED: hypothetical protein XP_002343606 
LOC728503             0.020   PREDICTED: hypothetical protein 
LOC728503             0.020   PREDICTED: hypothetical protein 
LOC728503             0.020   PREDICTED: hypothetical protein 
AMHR2                 0.020   anti-Mullerian hormone receptor, type II 
MDC1                  0.010   mediator of DNA-damage checkpoint 1 
MADCAM1               0.010   mucosal vascular addressin cell adhesion molecule 1...
DIDO1                 0.010   death inducer-obliterator 1 isoform c 
LRRC37A3              0.010   leucine rich repeat containing 37, member A3 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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