Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 4885193
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|4885193 AT rich interactive domain 3A (BRIGHT- like) protein
[Homo sapiens]
(593 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|4885193 AT rich interactive domain 3A (BRIGHT- like) protein ... 1182 0.0
gi|5453638 AT rich interactive domain 3B [Homo sapiens] 360 2e-99
gi|62865637 AT rich interactive domain 3C (BRIGHT- like) [Homo s... 296 5e-80
gi|40068466 AT rich interactive domain 1B (SWI1-like) isoform 1 ... 111 2e-24
gi|40068464 AT rich interactive domain 1B (SWI1-like) isoform 2 ... 104 2e-22
gi|40068462 AT rich interactive domain 1B (SWI1-like) isoform 3 ... 104 2e-22
gi|21264565 AT rich interactive domain 1A isoform a [Homo sapiens] 102 1e-21
gi|21264575 AT rich interactive domain 1A isoform b [Homo sapiens] 102 1e-21
gi|115334679 retinoblastoma-binding protein 1 isoform III [Homo ... 75 1e-13
gi|115334673 retinoblastoma-binding protein 1 isoform II [Homo s... 75 1e-13
gi|115334677 retinoblastoma-binding protein 1 isoform I [Homo sa... 75 1e-13
gi|56549668 AT rich interactive domain 2 (ARID, RFX-like) [Homo ... 74 4e-13
gi|22035679 AT rich interactive domain 4B isoform 2 [Homo sapiens] 72 1e-12
gi|22035677 AT rich interactive domain 4B isoform 1 [Homo sapiens] 72 1e-12
gi|155030232 proline, glutamic acid and leucine rich protein 1 [... 64 5e-10
gi|55956788 nucleolin [Homo sapiens] 59 1e-08
gi|110618244 retinoblastoma binding protein 2 isoform 1 [Homo sa... 59 1e-08
gi|110618242 retinoblastoma binding protein 2 isoform 2 [Homo sa... 59 1e-08
gi|33946282 hypothetical protein LOC25962 isoform 1 [Homo sapiens] 58 3e-08
gi|33946280 hypothetical protein LOC25962 isoform 2 [Homo sapiens] 58 3e-08
gi|17975763 myelin transcription factor 1 [Homo sapiens] 57 4e-08
gi|94536805 splicing factor YT521-B isoform 2 [Homo sapiens] 57 4e-08
gi|72534750 splicing factor YT521-B isoform 1 [Homo sapiens] 57 4e-08
gi|109255243 jumonji, AT rich interactive domain 1C isoform 1 [H... 57 5e-08
gi|78190492 retinitis pigmentosa GTPase regulator isoform C [Hom... 56 8e-08
gi|166795264 AE binding protein 2 isoform b [Homo sapiens] 56 8e-08
gi|166795262 AE binding protein 2 isoform a [Homo sapiens] 56 8e-08
gi|119709834 castor homolog 1, zinc finger isoform a [Homo sapiens] 55 1e-07
gi|33356560 jumonji, AT rich interactive domain 1D isoform 2 [Ho... 55 2e-07
gi|226442991 jumonji, AT rich interactive domain 1D isoform 1 [H... 55 2e-07
>gi|4885193 AT rich interactive domain 3A (BRIGHT- like) protein
[Homo sapiens]
Length = 593
Score = 1182 bits (3058), Expect = 0.0
Identities = 593/593 (100%), Positives = 593/593 (100%)
Query: 1 MKLQAVMETLLQRQQRARQELEARQQLPPDPPAAPPGRARAAPDEDREPESARMQRAQMA 60
MKLQAVMETLLQRQQRARQELEARQQLPPDPPAAPPGRARAAPDEDREPESARMQRAQMA
Sbjct: 1 MKLQAVMETLLQRQQRARQELEARQQLPPDPPAAPPGRARAAPDEDREPESARMQRAQMA 60
Query: 61 ALAAMRAAAAGLGHPASPGGSEDGPPGSEEEDAAREGTPGSPGRGREGPGEEHFEDMASD 120
ALAAMRAAAAGLGHPASPGGSEDGPPGSEEEDAAREGTPGSPGRGREGPGEEHFEDMASD
Sbjct: 61 ALAAMRAAAAGLGHPASPGGSEDGPPGSEEEDAAREGTPGSPGRGREGPGEEHFEDMASD 120
Query: 121 EDMKPKWEEEEMEEDLGEDEEEEEEDYEDEEEEEDEEGLGPPGPASLGTTALFPRKAQPP 180
EDMKPKWEEEEMEEDLGEDEEEEEEDYEDEEEEEDEEGLGPPGPASLGTTALFPRKAQPP
Sbjct: 121 EDMKPKWEEEEMEEDLGEDEEEEEEDYEDEEEEEDEEGLGPPGPASLGTTALFPRKAQPP 180
Query: 181 QAFRGDGVPRVLGGQERPGPGPAHPGGAAHVAPQLQPPDHGDWTYEEQFKQLYELDGDPK 240
QAFRGDGVPRVLGGQERPGPGPAHPGGAAHVAPQLQPPDHGDWTYEEQFKQLYELDGDPK
Sbjct: 181 QAFRGDGVPRVLGGQERPGPGPAHPGGAAHVAPQLQPPDHGDWTYEEQFKQLYELDGDPK 240
Query: 241 RKEFLDDLFSFMQKRGTPVNRIPIMAKQVLDLFMLYVLVTEKGGLVEVINKKLWREITKG 300
RKEFLDDLFSFMQKRGTPVNRIPIMAKQVLDLFMLYVLVTEKGGLVEVINKKLWREITKG
Sbjct: 241 RKEFLDDLFSFMQKRGTPVNRIPIMAKQVLDLFMLYVLVTEKGGLVEVINKKLWREITKG 300
Query: 301 LNLPTSITSAAFTLRTQYMKYLYPYECEKRGLSNPNELQAAIDSNRREGRRQSFGGSLFA 360
LNLPTSITSAAFTLRTQYMKYLYPYECEKRGLSNPNELQAAIDSNRREGRRQSFGGSLFA
Sbjct: 301 LNLPTSITSAAFTLRTQYMKYLYPYECEKRGLSNPNELQAAIDSNRREGRRQSFGGSLFA 360
Query: 361 YSPGGAHGMLSSPKLPVSSLGLAASTNGSSITPAPKIKKEEDSAIPITVPGRLPVSLAGH 420
YSPGGAHGMLSSPKLPVSSLGLAASTNGSSITPAPKIKKEEDSAIPITVPGRLPVSLAGH
Sbjct: 361 YSPGGAHGMLSSPKLPVSSLGLAASTNGSSITPAPKIKKEEDSAIPITVPGRLPVSLAGH 420
Query: 421 PVVAAQAAAVQAAAAQAAVAAQAAALEQLREKLESAEPPEKKMALVADEQQRLMQRALQQ 480
PVVAAQAAAVQAAAAQAAVAAQAAALEQLREKLESAEPPEKKMALVADEQQRLMQRALQQ
Sbjct: 421 PVVAAQAAAVQAAAAQAAVAAQAAALEQLREKLESAEPPEKKMALVADEQQRLMQRALQQ 480
Query: 481 NFLAMAAQLPMSIRINSQASESRQDSAVNLTGTNGSNSISMSVEINGIMYTGVLFAQPPA 540
NFLAMAAQLPMSIRINSQASESRQDSAVNLTGTNGSNSISMSVEINGIMYTGVLFAQPPA
Sbjct: 481 NFLAMAAQLPMSIRINSQASESRQDSAVNLTGTNGSNSISMSVEINGIMYTGVLFAQPPA 540
Query: 541 PTPTSAPNKGGGGGGGSSSNAGGRGGNTGTSGGQAGPAGLSTPSTSTSNNSLP 593
PTPTSAPNKGGGGGGGSSSNAGGRGGNTGTSGGQAGPAGLSTPSTSTSNNSLP
Sbjct: 541 PTPTSAPNKGGGGGGGSSSNAGGRGGNTGTSGGQAGPAGLSTPSTSTSNNSLP 593
>gi|5453638 AT rich interactive domain 3B [Homo sapiens]
Length = 560
Score = 360 bits (925), Expect = 2e-99
Identities = 244/598 (40%), Positives = 320/598 (53%), Gaps = 105/598 (17%)
Query: 7 METLLQRQQRARQELEARQQLPPDPPAAPPGRARAAPDEDREPESARMQRAQ-MAALAAM 65
ME L Q+QQ+ +Q+ + P P + A + ++ A+ AQ + +
Sbjct: 1 MEPLQQQQQQQQQQQKQ--------PHLAPLQMDAREKQGQQMREAQFLYAQKLVTQPTL 52
Query: 66 RAAAAGLGHPASP-GGSEDGPPGSEEEDAAREGTPGSPGRGREGPGEEHFEDMASDEDMK 124
+A AG ++P G PP + G S +
Sbjct: 53 LSATAGRPSGSTPLGPLARVPPTAAVAQVFERGNMNS----------------------E 90
Query: 125 PKWEEEEMEEDLGEDEEEEEEDYEDEEEEE--DEEGLGPPGPASLGTTALFPRKAQPPQA 182
P+ E+ +E++ G+DE E + E + + + + P + L P PP
Sbjct: 91 PEEEDGGLEDEDGDDEVAEVAEKETQAASKYFHVQKVARQDPRVAPMSNLLPAPGLPPH- 149
Query: 183 FRGDGVPRVLGGQERPGPGPAHPGGAAHVAPQLQPPDHGDWTYEEQFKQ----------- 231
GQ+ H A+ +P + +W +EQ KQ
Sbjct: 150 -----------GQQAKED---HTKDASKASPSVSTAGQPNWNLDEQLKQNGGLAWSDDAD 195
Query: 232 -------------LYELDGDPKRKEFLDDLFSFMQKRGTPVNRIPIMAKQVLDLFMLYVL 278
LYELDGDP+RKEFLDDLF FMQKRGTP+NRIPIMAKQ+LDL+MLY L
Sbjct: 196 GGRGREISRDFAKLYELDGDPERKEFLDDLFVFMQKRGTPINRIPIMAKQILDLYMLYKL 255
Query: 279 VTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMKYLYPYECEKRGLSNPNEL 338
VTEKGGLVE+INKK+WREITKGLNLPTSITSAAFTLRTQYMKYLY YECEK+ LS+P EL
Sbjct: 256 VTEKGGLVEIINKKIWREITKGLNLPTSITSAAFTLRTQYMKYLYAYECEKKALSSPAEL 315
Query: 339 QAAIDSNRREGRRQSFGGSLFAYSP--------GGAHGMLSSPKL--PVSSLGLAASTNG 388
QAAID NRREGRR S+ SLF YSP GA +LS PK+ P+ LG ++ TN
Sbjct: 316 QAAIDGNRREGRRPSYSSSLFGYSPAAATAAAAAGAPALLSPPKIRFPILGLGSSSGTNT 375
Query: 389 SS--ITPAPKIKKEEDSAI-PITVPGRLPVSLAGHPVVAAQAAAVQAAAAQAAVAAQAAA 445
SS I+PA ++K + + + + VP RL AV A + AA
Sbjct: 376 SSPRISPATTLRKGDGAPVTTVPVPNRL---------------AVPVTLASQQAGTRTAA 420
Query: 446 LEQLREKLESAEPPEKKMALVADEQQRLMQRALQQNFLAMAAQLPMSIRINSQASESRQD 505
LEQLRE+LES EP EKK + +++E+QRL+Q+A Q+NF +MA QLPM IRIN + +
Sbjct: 421 LEQLRERLESGEPAEKKASRLSEEEQRLVQQAFQRNFFSMARQLPMKIRINGREDRAEAS 480
Query: 506 -SAVNLTGTNGSNSISMSVEINGIMYTGVLFAQPPAP--TPTSAPNKGGGGGGGSSSN 560
+A+NLT T+ SI+MSV+I+G Y GVLFAQ P SAP G SSS+
Sbjct: 481 AAALNLT-TSSIGSINMSVDIDGTTYAGVLFAQKPVVHLITGSAPQSLGSSASSSSSS 537
>gi|62865637 AT rich interactive domain 3C (BRIGHT- like) [Homo
sapiens]
Length = 412
Score = 296 bits (757), Expect = 5e-80
Identities = 204/443 (46%), Positives = 249/443 (56%), Gaps = 106/443 (23%)
Query: 133 EEDLGEDEEEEEEDYEDEEEEEDEEGLGPPGPASLGTTALFPRKAQPPQAFRGDGVPRVL 192
E LG EEEED E++EE+ +E
Sbjct: 42 EGALGNVGAEEEEDAEEDEEKREE------------------------------------ 65
Query: 193 GGQERPGPGPAHPGGAAHVAPQLQPPD--HGDWTYEEQFKQLYELDGDPKRKEFLDDLFS 250
G E + PG +P QPP +WTYEEQFKQLYELD DPKRKEFLDDLFS
Sbjct: 66 AGAEEEAAEESRPGAQGPSSPSSQPPGLHPHEWTYEEQFKQLYELDADPKRKEFLDDLFS 125
Query: 251 FMQKRGTPVNRIPIMAKQVLDLFMLYVLVTEKGGLVEVINKKLWREITKGLNLPTSITSA 310
FMQKRGTPVNR+PIMAKQVLDL+ L+ LVT KGGLVEVIN+K+WRE+T+GL+LPT+ITSA
Sbjct: 126 FMQKRGTPVNRVPIMAKQVLDLYALFRLVTAKGGLVEVINRKVWREVTRGLSLPTTITSA 185
Query: 311 AFTLRTQYMKYLYPYECEKRGLSNPNELQAAIDSNRREGRRQSFGGS-LFAYS---PGGA 366
AFTLRTQYMKYLYPYECE R LS+P ELQAAIDSNRREGRRQ++ + LF + P GA
Sbjct: 186 AFTLRTQYMKYLYPYECETRALSSPGELQAAIDSNRREGRRQAYTATPLFGLAGPPPRGA 245
Query: 367 H----GMLSSPKLPVSSLGLA-ASTNG------SSITPAPKIKKEEDSAIPITVPGRLPV 415
G +P SS G A ST+G + ++P+P IKKEE S IP LPV
Sbjct: 246 QDPALGPGPAPPATQSSPGPAQGSTSGLPAHACAQLSPSP-IKKEE-SGIPNPCLA-LPV 302
Query: 416 SLAGHPVVAAQAAAVQAAAAQAAVAAQAAALEQLREKLESAEPPEKKMALVADEQQRLMQ 475
LA P REKL EPPEK+ L+ +
Sbjct: 303 GLALGPT---------------------------REKLAPEEPPEKRAVLMGPMDP--PR 333
Query: 476 RALQQNFLAMAAQLPMSIRINSQASESRQDSAVNLTGTNGSNSISMSVEINGIMYTGVLF 535
+ +FL ++P+ E R D +NL G +G +SI+M++EING++YTGVLF
Sbjct: 334 PCMPPSFLP-RGKVPL--------REERLDGPLNLAG-SGISSINMALEINGVVYTGVLF 383
Query: 536 A--QP---------PAPTPTSAP 547
A QP PAP P++ P
Sbjct: 384 ARRQPVPASQGPTNPAPPPSTGP 406
>gi|40068466 AT rich interactive domain 1B (SWI1-like) isoform 1 [Homo
sapiens]
Length = 2231
Score = 111 bits (277), Expect = 2e-24
Identities = 101/362 (27%), Positives = 160/362 (44%), Gaps = 49/362 (13%)
Query: 36 PGRARAAPDEDREPESARMQRAQMAALAAMRAAA--AGLGHPASPGGSEDG--------- 84
PG ++ P ++AQ AA A M+AAA A + PG ++ G
Sbjct: 850 PGMSQQGGPGMGPPMPTVNRKAQEAAAAVMQAAANSAQSRQGSFPGMNQSGLMASSSPYS 909
Query: 85 -PPGSEEEDAAREGTPGS--PGRGREGPGEEHFEDMASDEDMKPKW--EEEEMEEDLGED 139
P + + P S P DM S + K + + EE +
Sbjct: 910 QPMNNSSSLMNTQAPPYSMAPAMVNSSAASVGLADMMSPGESKLPLPLKADGKEEGTPQP 969
Query: 140 EEEEEEDYEDEEEEEDEEGLGPPGPASLGTTALFPRKAQPPQAFRGDGVPRVLGGQERPG 199
E + ++ Y + + PP P +L + + +F GD +
Sbjct: 970 ESKSKDSYSSQGISQ------PPTPGNLPVPSPMSPSSASISSFHGDESDSI------SS 1017
Query: 200 PG-PAHPGGAAHVAPQLQPPDHGDWTYEEQFKQLYELDGDPKRKEFLDDLFSFMQKRGTP 258
PG P P P T E+ ++YEL +P+RK ++D +FM++RG+P
Sbjct: 1018 PGWPKTPSS---------PKSSSSTTTGEKITKVYELGNEPERKLWVDRYLTFMEERGSP 1068
Query: 259 VNRIPIMAKQVLDLFMLYVLVTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQY 318
V+ +P + K+ LDLF LYV V E GGL +V K WRE+ LN+ TS +SAA +L+ QY
Sbjct: 1069 VSSLPAVGKKPLDLFRLYVCVKEIGGLAQVNKNKKWRELATNLNVGTS-SSAASSLKKQY 1127
Query: 319 MKYLYPYECE-KRGLSNPNELQAAIDSNRREGRRQSFGGSLFAYSPGGAHGMLSSPKLPV 377
++YL+ +EC+ +RG P E+ + D+ ++ L SP + G L P+ P
Sbjct: 1128 IQYLFAFECKIERGEEPPPEVFSTGDTKKQP--------KLQPPSPANS-GSLQGPQTPQ 1178
Query: 378 SS 379
S+
Sbjct: 1179 ST 1180
Score = 40.0 bits (92), Expect = 0.006
Identities = 18/51 (35%), Positives = 23/51 (45%)
Query: 538 PPAPTPTSAPNKGGGGGGGSSSNAGGRGGNTGTSGGQAGPAGLSTPSTSTS 588
P P + GGGGGGG S GG GG G G AG + + + +
Sbjct: 241 PGYSRPGAGGGGGGGGGGGGGSGGGGGGGGAGAGGAGAGAVAAAAAAAAAA 291
Score = 37.0 bits (84), Expect = 0.051
Identities = 26/93 (27%), Positives = 41/93 (44%), Gaps = 8/93 (8%)
Query: 97 GTPGSPGRGREGPGEEHFEDMASDEDMKPKWEEEEMEEDLGEDEEEEEEDYEDEEEEEDE 156
G P ++ + +A D +EEE E + +DEE+EE++ ED E+ E +
Sbjct: 1686 GDPSQKALDHNAARKDDSQSLADDSG-----KEEEDAECIDDDEEDEEDEEEDSEKTESD 1740
Query: 157 EGLGPPGPASLGTTALFPRKAQPPQAFRGDGVP 189
E A A K +P QA + D +P
Sbjct: 1741 E---KSSIALTAPDAAADPKEKPKQASKFDKLP 1770
Score = 33.9 bits (76), Expect = 0.43
Identities = 27/98 (27%), Positives = 42/98 (42%), Gaps = 1/98 (1%)
Query: 12 QRQQRARQELEARQQLPPDPPAAPPGRARAAPDEDREPESARMQRAQMAALAAMRAAAAG 71
Q+QQ+ +Q+ + +QQ P + G AP + E + A+ +A A +A G
Sbjct: 59 QQQQQQQQQQQQQQQHPISNNNSLGGAGGGAPQPGPDMEQPQHGGAKDSA-AGGQADPPG 117
Query: 72 LGHPASPGGSEDGPPGSEEEDAAREGTPGSPGRGREGP 109
+ PG +D PP E R PG G + P
Sbjct: 118 PPLLSKPGDEDDAPPKMGEPAGGRYEHPGLGALGTQQP 155
Score = 31.2 bits (69), Expect = 2.8
Identities = 27/94 (28%), Positives = 34/94 (36%), Gaps = 6/94 (6%)
Query: 17 ARQELEARQQLPPDPPA-APPGRARAAPDEDREPESARMQRAQMAALAAMRAAAAGLGHP 75
A+ Q PP PP + PG AP + EP R + + AL + A G
Sbjct: 104 AKDSAAGGQADPPGPPLLSKPGDEDDAPPKMGEPAGGRYEHPGLGALGTQQPPVAVPG-- 161
Query: 76 ASPGGSEDGPPGSEEEDAAREGTPGSPGRGREGP 109
GG P + G PG GR GP
Sbjct: 162 --GGGGPAAVPEFNNYYGSAAPASGGPG-GRAGP 192
Score = 29.6 bits (65), Expect = 8.2
Identities = 12/30 (40%), Positives = 15/30 (50%)
Query: 550 GGGGGGGSSSNAGGRGGNTGTSGGQAGPAG 579
GGGGGGG+ + G G + A AG
Sbjct: 264 GGGGGGGAGAGGAGAGAVAAAAAAAAAAAG 293
Score = 29.6 bits (65), Expect = 8.2
Identities = 18/49 (36%), Positives = 20/49 (40%), Gaps = 15/49 (30%)
Query: 550 GGGGGGGSSSNAG---------------GRGGNTGTSGGQAGPAGLSTP 583
GGGGGG + AG G GG G G AG LS+P
Sbjct: 265 GGGGGGAGAGGAGAGAVAAAAAAAAAAAGGGGGGGYGGSSAGYGVLSSP 313
>gi|40068464 AT rich interactive domain 1B (SWI1-like) isoform 2 [Homo
sapiens]
Length = 2191
Score = 104 bits (260), Expect = 2e-22
Identities = 68/197 (34%), Positives = 107/197 (54%), Gaps = 14/197 (7%)
Query: 187 GVPRVLGGQERPGPGPAHPGGAAHVAPQLQPPDH---GDWTYEEQFKQLYELDGDPKRKE 243
G+ ++ E P P G PQ + T E+ ++YEL +P+RK
Sbjct: 954 GLADMMSPGESKLPLPLKADGKEEGTPQPESKSKKSSSSTTTGEKITKVYELGNEPERKL 1013
Query: 244 FLDDLFSFMQKRGTPVNRIPIMAKQVLDLFMLYVLVTEKGGLVEVINKKLWREITKGLNL 303
++D +FM++RG+PV+ +P + K+ LDLF LYV V E GGL +V K WRE+ LN+
Sbjct: 1014 WVDRYLTFMEERGSPVSSLPAVGKKPLDLFRLYVCVKEIGGLAQVNKNKKWRELATNLNV 1073
Query: 304 PTSITSAAFTLRTQYMKYLYPYECE-KRGLSNPNELQAAIDSNRREGRRQSFGGSLFAYS 362
TS +SAA +L+ QY++YL+ +EC+ +RG P E+ + D+ ++ L S
Sbjct: 1074 GTS-SSAASSLKKQYIQYLFAFECKIERGEEPPPEVFSTGDTKKQP--------KLQPPS 1124
Query: 363 PGGAHGMLSSPKLPVSS 379
P + G L P+ P S+
Sbjct: 1125 PANS-GSLQGPQTPQST 1140
Score = 40.0 bits (92), Expect = 0.006
Identities = 18/51 (35%), Positives = 23/51 (45%)
Query: 538 PPAPTPTSAPNKGGGGGGGSSSNAGGRGGNTGTSGGQAGPAGLSTPSTSTS 588
P P + GGGGGGG S GG GG G G AG + + + +
Sbjct: 241 PGYSRPGAGGGGGGGGGGGGGSGGGGGGGGAGAGGAGAGAVAAAAAAAAAA 291
Score = 37.0 bits (84), Expect = 0.051
Identities = 26/93 (27%), Positives = 41/93 (44%), Gaps = 8/93 (8%)
Query: 97 GTPGSPGRGREGPGEEHFEDMASDEDMKPKWEEEEMEEDLGEDEEEEEEDYEDEEEEEDE 156
G P ++ + +A D +EEE E + +DEE+EE++ ED E+ E +
Sbjct: 1646 GDPSQKALDHNAARKDDSQSLADDSG-----KEEEDAECIDDDEEDEEDEEEDSEKTESD 1700
Query: 157 EGLGPPGPASLGTTALFPRKAQPPQAFRGDGVP 189
E A A K +P QA + D +P
Sbjct: 1701 E---KSSIALTAPDAAADPKEKPKQASKFDKLP 1730
Score = 33.9 bits (76), Expect = 0.43
Identities = 27/98 (27%), Positives = 42/98 (42%), Gaps = 1/98 (1%)
Query: 12 QRQQRARQELEARQQLPPDPPAAPPGRARAAPDEDREPESARMQRAQMAALAAMRAAAAG 71
Q+QQ+ +Q+ + +QQ P + G AP + E + A+ +A A +A G
Sbjct: 59 QQQQQQQQQQQQQQQHPISNNNSLGGAGGGAPQPGPDMEQPQHGGAKDSA-AGGQADPPG 117
Query: 72 LGHPASPGGSEDGPPGSEEEDAAREGTPGSPGRGREGP 109
+ PG +D PP E R PG G + P
Sbjct: 118 PPLLSKPGDEDDAPPKMGEPAGGRYEHPGLGALGTQQP 155
Score = 31.2 bits (69), Expect = 2.8
Identities = 27/94 (28%), Positives = 34/94 (36%), Gaps = 6/94 (6%)
Query: 17 ARQELEARQQLPPDPPA-APPGRARAAPDEDREPESARMQRAQMAALAAMRAAAAGLGHP 75
A+ Q PP PP + PG AP + EP R + + AL + A G
Sbjct: 104 AKDSAAGGQADPPGPPLLSKPGDEDDAPPKMGEPAGGRYEHPGLGALGTQQPPVAVPG-- 161
Query: 76 ASPGGSEDGPPGSEEEDAAREGTPGSPGRGREGP 109
GG P + G PG GR GP
Sbjct: 162 --GGGGPAAVPEFNNYYGSAAPASGGPG-GRAGP 192
Score = 29.6 bits (65), Expect = 8.2
Identities = 12/30 (40%), Positives = 15/30 (50%)
Query: 550 GGGGGGGSSSNAGGRGGNTGTSGGQAGPAG 579
GGGGGGG+ + G G + A AG
Sbjct: 264 GGGGGGGAGAGGAGAGAVAAAAAAAAAAAG 293
Score = 29.6 bits (65), Expect = 8.2
Identities = 18/49 (36%), Positives = 20/49 (40%), Gaps = 15/49 (30%)
Query: 550 GGGGGGGSSSNAG---------------GRGGNTGTSGGQAGPAGLSTP 583
GGGGGG + AG G GG G G AG LS+P
Sbjct: 265 GGGGGGAGAGGAGAGAVAAAAAAAAAAAGGGGGGGYGGSSAGYGVLSSP 313
>gi|40068462 AT rich interactive domain 1B (SWI1-like) isoform 3 [Homo
sapiens]
Length = 2178
Score = 104 bits (260), Expect = 2e-22
Identities = 68/197 (34%), Positives = 107/197 (54%), Gaps = 14/197 (7%)
Query: 187 GVPRVLGGQERPGPGPAHPGGAAHVAPQLQPPDH---GDWTYEEQFKQLYELDGDPKRKE 243
G+ ++ E P P G PQ + T E+ ++YEL +P+RK
Sbjct: 941 GLADMMSPGESKLPLPLKADGKEEGTPQPESKSKKSSSSTTTGEKITKVYELGNEPERKL 1000
Query: 244 FLDDLFSFMQKRGTPVNRIPIMAKQVLDLFMLYVLVTEKGGLVEVINKKLWREITKGLNL 303
++D +FM++RG+PV+ +P + K+ LDLF LYV V E GGL +V K WRE+ LN+
Sbjct: 1001 WVDRYLTFMEERGSPVSSLPAVGKKPLDLFRLYVCVKEIGGLAQVNKNKKWRELATNLNV 1060
Query: 304 PTSITSAAFTLRTQYMKYLYPYECE-KRGLSNPNELQAAIDSNRREGRRQSFGGSLFAYS 362
TS +SAA +L+ QY++YL+ +EC+ +RG P E+ + D+ ++ L S
Sbjct: 1061 GTS-SSAASSLKKQYIQYLFAFECKIERGEEPPPEVFSTGDTKKQP--------KLQPPS 1111
Query: 363 PGGAHGMLSSPKLPVSS 379
P + G L P+ P S+
Sbjct: 1112 PANS-GSLQGPQTPQST 1127
Score = 40.0 bits (92), Expect = 0.006
Identities = 18/51 (35%), Positives = 23/51 (45%)
Query: 538 PPAPTPTSAPNKGGGGGGGSSSNAGGRGGNTGTSGGQAGPAGLSTPSTSTS 588
P P + GGGGGGG S GG GG G G AG + + + +
Sbjct: 241 PGYSRPGAGGGGGGGGGGGGGSGGGGGGGGAGAGGAGAGAVAAAAAAAAAA 291
Score = 37.0 bits (84), Expect = 0.051
Identities = 26/93 (27%), Positives = 41/93 (44%), Gaps = 8/93 (8%)
Query: 97 GTPGSPGRGREGPGEEHFEDMASDEDMKPKWEEEEMEEDLGEDEEEEEEDYEDEEEEEDE 156
G P ++ + +A D +EEE E + +DEE+EE++ ED E+ E +
Sbjct: 1633 GDPSQKALDHNAARKDDSQSLADDSG-----KEEEDAECIDDDEEDEEDEEEDSEKTESD 1687
Query: 157 EGLGPPGPASLGTTALFPRKAQPPQAFRGDGVP 189
E A A K +P QA + D +P
Sbjct: 1688 E---KSSIALTAPDAAADPKEKPKQASKFDKLP 1717
Score = 33.9 bits (76), Expect = 0.43
Identities = 27/98 (27%), Positives = 42/98 (42%), Gaps = 1/98 (1%)
Query: 12 QRQQRARQELEARQQLPPDPPAAPPGRARAAPDEDREPESARMQRAQMAALAAMRAAAAG 71
Q+QQ+ +Q+ + +QQ P + G AP + E + A+ +A A +A G
Sbjct: 59 QQQQQQQQQQQQQQQHPISNNNSLGGAGGGAPQPGPDMEQPQHGGAKDSA-AGGQADPPG 117
Query: 72 LGHPASPGGSEDGPPGSEEEDAAREGTPGSPGRGREGP 109
+ PG +D PP E R PG G + P
Sbjct: 118 PPLLSKPGDEDDAPPKMGEPAGGRYEHPGLGALGTQQP 155
Score = 31.2 bits (69), Expect = 2.8
Identities = 27/94 (28%), Positives = 34/94 (36%), Gaps = 6/94 (6%)
Query: 17 ARQELEARQQLPPDPPA-APPGRARAAPDEDREPESARMQRAQMAALAAMRAAAAGLGHP 75
A+ Q PP PP + PG AP + EP R + + AL + A G
Sbjct: 104 AKDSAAGGQADPPGPPLLSKPGDEDDAPPKMGEPAGGRYEHPGLGALGTQQPPVAVPG-- 161
Query: 76 ASPGGSEDGPPGSEEEDAAREGTPGSPGRGREGP 109
GG P + G PG GR GP
Sbjct: 162 --GGGGPAAVPEFNNYYGSAAPASGGPG-GRAGP 192
Score = 29.6 bits (65), Expect = 8.2
Identities = 12/30 (40%), Positives = 15/30 (50%)
Query: 550 GGGGGGGSSSNAGGRGGNTGTSGGQAGPAG 579
GGGGGGG+ + G G + A AG
Sbjct: 264 GGGGGGGAGAGGAGAGAVAAAAAAAAAAAG 293
Score = 29.6 bits (65), Expect = 8.2
Identities = 18/49 (36%), Positives = 20/49 (40%), Gaps = 15/49 (30%)
Query: 550 GGGGGGGSSSNAG---------------GRGGNTGTSGGQAGPAGLSTP 583
GGGGGG + AG G GG G G AG LS+P
Sbjct: 265 GGGGGGAGAGGAGAGAVAAAAAAAAAAAGGGGGGGYGGSSAGYGVLSSP 313
>gi|21264565 AT rich interactive domain 1A isoform a [Homo sapiens]
Length = 2285
Score = 102 bits (254), Expect = 1e-21
Identities = 66/194 (34%), Positives = 104/194 (53%), Gaps = 21/194 (10%)
Query: 224 TYEEQFKQLYELDGDPKRKEFLDDLFSFMQKRGTPVNRIPIMAKQVLDLFMLYVLVTEKG 283
T E+ +LYEL G+P+RK ++D +F +++ + +P + ++ LDL+ LYV V E G
Sbjct: 1003 TTNEKITKLYELGGEPERKMWVDRYLAFTEEKAMGMTNLPAVGRKPLDLYRLYVSVKEIG 1062
Query: 284 GLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMKYLYPYECE-KRGLSNPNELQAAI 342
GL +V K WRE+ LN+ TS +SAA +L+ QY++ LY +EC+ +RG P ++ AA
Sbjct: 1063 GLTQVNKNKKWRELATNLNVGTS-SSAASSLKKQYIQCLYAFECKIERGEDPPPDIFAAA 1121
Query: 343 DSNRREGRRQSFGGSLFAYSPGGAHGMLSSPKLPVSSLG-----------LAASTNGSSI 391
DS + + + Q SP G+ G + P+ P S+ AST S I
Sbjct: 1122 DSKKSQPKIQ-------PPSPAGS-GSMQGPQTPQSTSSSMAEGGDLKPPTPASTPHSQI 1173
Query: 392 TPAPKIKKEEDSAI 405
P P + + I
Sbjct: 1174 PPLPGMSRSNSVGI 1187
Score = 38.1 bits (87), Expect = 0.023
Identities = 45/197 (22%), Positives = 63/197 (31%), Gaps = 10/197 (5%)
Query: 30 DPPAAPPGRARAAPDEDREPESARMQRAQMAALAAMRAAAAGLGHPASPGGSEDGPPGSE 89
+PP PP + A + RE A A M+AAA + G + P G E
Sbjct: 15 NPPPPPPSELKKAEQQQREEAGGEAAAAAAAERGEMKAAAGQESEGPAVGPPQ--PLGKE 72
Query: 90 EEDAAREGTPGSPGRGREGPGEEHFEDMA-SDEDMKPKWEEEEMEEDLGEDEEEEEEDYE 148
+D A G G G G D+ S+ + P+ + +L E
Sbjct: 73 LQDGAESNGGGGGGGAGSGGGPGAEPDLKNSNGNAGPR---PALNNNLTEPPGGGGGGSS 129
Query: 149 DEEEEEDEEGLGPPGPASLGTTALFPRKAQPPQAFRGDGVPRVLGGQERPGPGPAHPGGA 208
D P + G + R A + GGQ+ PG GG
Sbjct: 130 DGVGAPPHSAAAALPPPAYGFGQPYGRSPSAVAAAAAAVFHQQHGGQQSPGLAALQSGGG 189
Query: 209 A----HVAPQLQPPDHG 221
+ PQ DHG
Sbjct: 190 GGLEPYAGPQQNSHDHG 206
Score = 32.7 bits (73), Expect = 0.97
Identities = 19/45 (42%), Positives = 22/45 (48%), Gaps = 5/45 (11%)
Query: 538 PPAPT----PTSAPNKGGGGGGGSSSNAG-GRGGNTGTSGGQAGP 577
PP P A + GGGGGGG+ S G G + S G AGP
Sbjct: 65 PPQPLGKELQDGAESNGGGGGGGAGSGGGPGAEPDLKNSNGNAGP 109
Score = 30.0 bits (66), Expect = 6.3
Identities = 27/100 (27%), Positives = 38/100 (38%), Gaps = 12/100 (12%)
Query: 24 RQQLPPDPPA---------APPGRARAAPDEDREPESARMQRAQMAALAAMRAAAAGLGH 74
R PP PA P A AA P S+ + ++ A R A G G
Sbjct: 219 RSAYPPPAPAYALSSPRGGTPGSGAAAAAGSKPPPSSSASASSSSSSFAQQRFGAMGGGG 278
Query: 75 PASPGGSEDGPPGSEEEDAAREGTPGSPGRGREG-PGEEH 113
P++ GG P + + T S RG +G PG ++
Sbjct: 279 PSAAGGGTPQPTATPTLNQLL--TSPSSARGYQGYPGGDY 316
>gi|21264575 AT rich interactive domain 1A isoform b [Homo sapiens]
Length = 2068
Score = 102 bits (254), Expect = 1e-21
Identities = 66/194 (34%), Positives = 104/194 (53%), Gaps = 21/194 (10%)
Query: 224 TYEEQFKQLYELDGDPKRKEFLDDLFSFMQKRGTPVNRIPIMAKQVLDLFMLYVLVTEKG 283
T E+ +LYEL G+P+RK ++D +F +++ + +P + ++ LDL+ LYV V E G
Sbjct: 1003 TTNEKITKLYELGGEPERKMWVDRYLAFTEEKAMGMTNLPAVGRKPLDLYRLYVSVKEIG 1062
Query: 284 GLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMKYLYPYECE-KRGLSNPNELQAAI 342
GL +V K WRE+ LN+ TS +SAA +L+ QY++ LY +EC+ +RG P ++ AA
Sbjct: 1063 GLTQVNKNKKWRELATNLNVGTS-SSAASSLKKQYIQCLYAFECKIERGEDPPPDIFAAA 1121
Query: 343 DSNRREGRRQSFGGSLFAYSPGGAHGMLSSPKLPVSSLG-----------LAASTNGSSI 391
DS + + + Q SP G+ G + P+ P S+ AST S I
Sbjct: 1122 DSKKSQPKIQ-------PPSPAGS-GSMQGPQTPQSTSSSMAEGGDLKPPTPASTPHSQI 1173
Query: 392 TPAPKIKKEEDSAI 405
P P + + I
Sbjct: 1174 PPLPGMSRSNSVGI 1187
Score = 38.1 bits (87), Expect = 0.023
Identities = 45/197 (22%), Positives = 63/197 (31%), Gaps = 10/197 (5%)
Query: 30 DPPAAPPGRARAAPDEDREPESARMQRAQMAALAAMRAAAAGLGHPASPGGSEDGPPGSE 89
+PP PP + A + RE A A M+AAA + G + P G E
Sbjct: 15 NPPPPPPSELKKAEQQQREEAGGEAAAAAAAERGEMKAAAGQESEGPAVGPPQ--PLGKE 72
Query: 90 EEDAAREGTPGSPGRGREGPGEEHFEDMA-SDEDMKPKWEEEEMEEDLGEDEEEEEEDYE 148
+D A G G G G D+ S+ + P+ + +L E
Sbjct: 73 LQDGAESNGGGGGGGAGSGGGPGAEPDLKNSNGNAGPR---PALNNNLTEPPGGGGGGSS 129
Query: 149 DEEEEEDEEGLGPPGPASLGTTALFPRKAQPPQAFRGDGVPRVLGGQERPGPGPAHPGGA 208
D P + G + R A + GGQ+ PG GG
Sbjct: 130 DGVGAPPHSAAAALPPPAYGFGQPYGRSPSAVAAAAAAVFHQQHGGQQSPGLAALQSGGG 189
Query: 209 A----HVAPQLQPPDHG 221
+ PQ DHG
Sbjct: 190 GGLEPYAGPQQNSHDHG 206
Score = 32.7 bits (73), Expect = 0.97
Identities = 19/45 (42%), Positives = 22/45 (48%), Gaps = 5/45 (11%)
Query: 538 PPAPT----PTSAPNKGGGGGGGSSSNAG-GRGGNTGTSGGQAGP 577
PP P A + GGGGGGG+ S G G + S G AGP
Sbjct: 65 PPQPLGKELQDGAESNGGGGGGGAGSGGGPGAEPDLKNSNGNAGP 109
Score = 30.0 bits (66), Expect = 6.3
Identities = 27/100 (27%), Positives = 38/100 (38%), Gaps = 12/100 (12%)
Query: 24 RQQLPPDPPA---------APPGRARAAPDEDREPESARMQRAQMAALAAMRAAAAGLGH 74
R PP PA P A AA P S+ + ++ A R A G G
Sbjct: 219 RSAYPPPAPAYALSSPRGGTPGSGAAAAAGSKPPPSSSASASSSSSSFAQQRFGAMGGGG 278
Query: 75 PASPGGSEDGPPGSEEEDAAREGTPGSPGRGREG-PGEEH 113
P++ GG P + + T S RG +G PG ++
Sbjct: 279 PSAAGGGTPQPTATPTLNQLL--TSPSSARGYQGYPGGDY 316
>gi|115334679 retinoblastoma-binding protein 1 isoform III [Homo
sapiens]
Length = 1188
Score = 75.5 bits (184), Expect = 1e-13
Identities = 38/115 (33%), Positives = 70/115 (60%), Gaps = 5/115 (4%)
Query: 217 PPDHGDWTYEEQFK----QLYELDGDPKRKE-FLDDLFSFMQKRGTPVNRIPIMAKQVLD 271
P + D E++ K ++ E + DP+ ++ FL L+ FM+ RGTP+N+ P++ + L+
Sbjct: 283 PAEENDEEKEKEAKKTEEEVPEEELDPEERDNFLQQLYKFMEDRGTPINKPPVLGYKDLN 342
Query: 272 LFMLYVLVTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMKYLYPYE 326
LF L+ LV +GG + + +W++I L +P ++A++ ++T Y KYLY +E
Sbjct: 343 LFKLFRLVYHQGGCDNIDSGAVWKQIYMDLGIPILNSAASYNVKTAYRKYLYGFE 397
Score = 32.0 bits (71), Expect = 1.6
Identities = 18/67 (26%), Positives = 31/67 (46%)
Query: 82 EDGPPGSEEEDAAREGTPGSPGRGREGPGEEHFEDMASDEDMKPKWEEEEMEEDLGEDEE 141
+D ++E+ G +P + + ++ D SDE+ + E EE E + E
Sbjct: 505 DDYETAEKKENELLLGRKNTPKQKEKKIKKQEDSDKDSDEEEEKSQEREETESKCDSEGE 564
Query: 142 EEEEDYE 148
E+EED E
Sbjct: 565 EDEEDME 571
Score = 30.8 bits (68), Expect = 3.7
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 11/48 (22%)
Query: 125 PKWEEEEM--EEDLGEDEEEEEEDYEDEEE---------EEDEEGLGP 161
PK +E+++ +ED +D +EEEE ++ EE EEDEE + P
Sbjct: 525 PKQKEKKIKKQEDSDKDSDEEEEKSQEREETESKCDSEGEEDEEDMEP 572
Score = 30.0 bits (66), Expect = 6.3
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 105 GREGPGEEHFEDMASDEDMKPKWEEEEMEEDLGEDEEEEEEDYEDEEEEEDEE 157
GR+ ++ + + ED +EEE E+ +E E + D E EE+EED E
Sbjct: 520 GRKNTPKQKEKKIKKQEDSDKDSDEEE-EKSQEREETESKCDSEGEEDEEDME 571
>gi|115334673 retinoblastoma-binding protein 1 isoform II [Homo
sapiens]
Length = 1203
Score = 75.5 bits (184), Expect = 1e-13
Identities = 38/115 (33%), Positives = 70/115 (60%), Gaps = 5/115 (4%)
Query: 217 PPDHGDWTYEEQFK----QLYELDGDPKRKE-FLDDLFSFMQKRGTPVNRIPIMAKQVLD 271
P + D E++ K ++ E + DP+ ++ FL L+ FM+ RGTP+N+ P++ + L+
Sbjct: 283 PAEENDEEKEKEAKKTEEEVPEEELDPEERDNFLQQLYKFMEDRGTPINKPPVLGYKDLN 342
Query: 272 LFMLYVLVTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMKYLYPYE 326
LF L+ LV +GG + + +W++I L +P ++A++ ++T Y KYLY +E
Sbjct: 343 LFKLFRLVYHQGGCDNIDSGAVWKQIYMDLGIPILNSAASYNVKTAYRKYLYGFE 397
Score = 32.0 bits (71), Expect = 1.6
Identities = 18/67 (26%), Positives = 31/67 (46%)
Query: 82 EDGPPGSEEEDAAREGTPGSPGRGREGPGEEHFEDMASDEDMKPKWEEEEMEEDLGEDEE 141
+D ++E+ G +P + + ++ D SDE+ + E EE E + E
Sbjct: 505 DDYETAEKKENELLLGRKNTPKQKEKKIKKQEDSDKDSDEEEEKSQEREETESKCDSEGE 564
Query: 142 EEEEDYE 148
E+EED E
Sbjct: 565 EDEEDME 571
Score = 30.8 bits (68), Expect = 3.7
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 11/48 (22%)
Query: 125 PKWEEEEM--EEDLGEDEEEEEEDYEDEEE---------EEDEEGLGP 161
PK +E+++ +ED +D +EEEE ++ EE EEDEE + P
Sbjct: 525 PKQKEKKIKKQEDSDKDSDEEEEKSQEREETESKCDSEGEEDEEDMEP 572
Score = 30.0 bits (66), Expect = 6.3
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 105 GREGPGEEHFEDMASDEDMKPKWEEEEMEEDLGEDEEEEEEDYEDEEEEEDEE 157
GR+ ++ + + ED +EEE E+ +E E + D E EE+EED E
Sbjct: 520 GRKNTPKQKEKKIKKQEDSDKDSDEEE-EKSQEREETESKCDSEGEEDEEDME 571
>gi|115334677 retinoblastoma-binding protein 1 isoform I [Homo
sapiens]
Length = 1257
Score = 75.5 bits (184), Expect = 1e-13
Identities = 38/115 (33%), Positives = 70/115 (60%), Gaps = 5/115 (4%)
Query: 217 PPDHGDWTYEEQFK----QLYELDGDPKRKE-FLDDLFSFMQKRGTPVNRIPIMAKQVLD 271
P + D E++ K ++ E + DP+ ++ FL L+ FM+ RGTP+N+ P++ + L+
Sbjct: 283 PAEENDEEKEKEAKKTEEEVPEEELDPEERDNFLQQLYKFMEDRGTPINKPPVLGYKDLN 342
Query: 272 LFMLYVLVTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMKYLYPYE 326
LF L+ LV +GG + + +W++I L +P ++A++ ++T Y KYLY +E
Sbjct: 343 LFKLFRLVYHQGGCDNIDSGAVWKQIYMDLGIPILNSAASYNVKTAYRKYLYGFE 397
Score = 32.0 bits (71), Expect = 1.6
Identities = 18/67 (26%), Positives = 31/67 (46%)
Query: 82 EDGPPGSEEEDAAREGTPGSPGRGREGPGEEHFEDMASDEDMKPKWEEEEMEEDLGEDEE 141
+D ++E+ G +P + + ++ D SDE+ + E EE E + E
Sbjct: 505 DDYETAEKKENELLLGRKNTPKQKEKKIKKQEDSDKDSDEEEEKSQEREETESKCDSEGE 564
Query: 142 EEEEDYE 148
E+EED E
Sbjct: 565 EDEEDME 571
Score = 30.8 bits (68), Expect = 3.7
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 11/48 (22%)
Query: 125 PKWEEEEM--EEDLGEDEEEEEEDYEDEEE---------EEDEEGLGP 161
PK +E+++ +ED +D +EEEE ++ EE EEDEE + P
Sbjct: 525 PKQKEKKIKKQEDSDKDSDEEEEKSQEREETESKCDSEGEEDEEDMEP 572
Score = 30.0 bits (66), Expect = 6.3
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 105 GREGPGEEHFEDMASDEDMKPKWEEEEMEEDLGEDEEEEEEDYEDEEEEEDEE 157
GR+ ++ + + ED +EEE E+ +E E + D E EE+EED E
Sbjct: 520 GRKNTPKQKEKKIKKQEDSDKDSDEEE-EKSQEREETESKCDSEGEEDEEDME 571
>gi|56549668 AT rich interactive domain 2 (ARID, RFX-like) [Homo
sapiens]
Length = 1835
Score = 73.9 bits (180), Expect = 4e-13
Identities = 39/91 (42%), Positives = 52/91 (57%), Gaps = 2/91 (2%)
Query: 238 DPKRK--EFLDDLFSFMQKRGTPVNRIPIMAKQVLDLFMLYVLVTEKGGLVEVINKKLWR 295
D +RK FLD+L F RG+P +IP + + LDL LY VT GG +V K W
Sbjct: 11 DERRKGLAFLDELRQFHHSRGSPFKKIPAVGGKELDLHGLYTRVTTLGGFAKVSEKNQWG 70
Query: 296 EITKGLNLPTSITSAAFTLRTQYMKYLYPYE 326
EI + N P S ++AAF L+ Y++YL YE
Sbjct: 71 EIVEEFNFPRSCSNAAFALKQYYLRYLEKYE 101
>gi|22035679 AT rich interactive domain 4B isoform 2 [Homo sapiens]
Length = 1226
Score = 72.0 bits (175), Expect = 1e-12
Identities = 30/87 (34%), Positives = 56/87 (64%)
Query: 240 KRKEFLDDLFSFMQKRGTPVNRIPIMAKQVLDLFMLYVLVTEKGGLVEVINKKLWREITK 299
+R+ FL L+ FM+ RGTP+N+ P++ + L+LF L+ LV + GG + + +W+++ +
Sbjct: 308 ERENFLQQLYKFMEDRGTPINKRPVLGYRNLNLFKLFRLVHKLGGFDNIESGAVWKQVYQ 367
Query: 300 GLNLPTSITSAAFTLRTQYMKYLYPYE 326
L +P ++A + ++ Y KYLY +E
Sbjct: 368 DLGIPVLNSAAGYNVKCAYKKYLYGFE 394
Score = 33.5 bits (75), Expect = 0.57
Identities = 19/36 (52%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
Query: 121 EDMKPKWEEEEMEEDLGEDEEEEEEDYEDEEEEEDE 156
ED EEE EE ED+E+E+ED EEEEE E
Sbjct: 271 EDSSSSEAEEEEEE---EDDEKEKEDNSSEEEEEIE 303
Score = 33.1 bits (74), Expect = 0.74
Identities = 13/29 (44%), Positives = 20/29 (68%)
Query: 127 WEEEEMEEDLGEDEEEEEEDYEDEEEEED 155
W+ E E+ + EEEEE+ +DE+E+ED
Sbjct: 265 WKTELKEDSSSSEAEEEEEEEDDEKEKED 293
Score = 31.6 bits (70), Expect = 2.2
Identities = 12/26 (46%), Positives = 20/26 (76%)
Query: 131 EMEEDLGEDEEEEEEDYEDEEEEEDE 156
E++ED E EEEE+ ED+E+E+++
Sbjct: 268 ELKEDSSSSEAEEEEEEEDDEKEKED 293
Score = 30.4 bits (67), Expect = 4.8
Identities = 14/36 (38%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
Query: 122 DMKPKWEEEEMEEDLGEDEEEEEEDYEDEEEEEDEE 157
++K E EE+ E+EE++E++ ED EE+EE
Sbjct: 268 ELKEDSSSSEAEEE--EEEEDDEKEKEDNSSEEEEE 301
>gi|22035677 AT rich interactive domain 4B isoform 1 [Homo sapiens]
Length = 1312
Score = 72.0 bits (175), Expect = 1e-12
Identities = 30/87 (34%), Positives = 56/87 (64%)
Query: 240 KRKEFLDDLFSFMQKRGTPVNRIPIMAKQVLDLFMLYVLVTEKGGLVEVINKKLWREITK 299
+R+ FL L+ FM+ RGTP+N+ P++ + L+LF L+ LV + GG + + +W+++ +
Sbjct: 308 ERENFLQQLYKFMEDRGTPINKRPVLGYRNLNLFKLFRLVHKLGGFDNIESGAVWKQVYQ 367
Query: 300 GLNLPTSITSAAFTLRTQYMKYLYPYE 326
L +P ++A + ++ Y KYLY +E
Sbjct: 368 DLGIPVLNSAAGYNVKCAYKKYLYGFE 394
Score = 40.8 bits (94), Expect = 0.004
Identities = 19/46 (41%), Positives = 30/46 (65%)
Query: 118 ASDEDMKPKWEEEEMEEDLGEDEEEEEEDYEDEEEEEDEEGLGPPG 163
+ DE K + E++E E+ E+EEEEE++ +D+ EE+E PPG
Sbjct: 527 SGDETNKEEDEDDEEAEEEEEEEEEEEDEDDDDNNEEEEFECYPPG 572
Score = 38.9 bits (89), Expect = 0.013
Identities = 16/39 (41%), Positives = 27/39 (69%)
Query: 119 SDEDMKPKWEEEEMEEDLGEDEEEEEEDYEDEEEEEDEE 157
++E+ +E EED ++E EEEE+ E+EEE+ED++
Sbjct: 520 AEEEKAKSGDETNKEEDEDDEEAEEEEEEEEEEEDEDDD 558
Score = 36.2 bits (82), Expect = 0.087
Identities = 19/40 (47%), Positives = 27/40 (67%), Gaps = 2/40 (5%)
Query: 120 DEDMKPKWEEEEMEEDLGED--EEEEEEDYEDEEEEEDEE 157
DE + K E EE + G++ +EE+E+D E EEEEE+EE
Sbjct: 511 DESLNIKVEAEEEKAKSGDETNKEEDEDDEEAEEEEEEEE 550
Score = 35.8 bits (81), Expect = 0.11
Identities = 16/40 (40%), Positives = 27/40 (67%)
Query: 118 ASDEDMKPKWEEEEMEEDLGEDEEEEEEDYEDEEEEEDEE 157
A +E K E + E++ E+ EEEEE+ E+EE+E+D++
Sbjct: 520 AEEEKAKSGDETNKEEDEDDEEAEEEEEEEEEEEDEDDDD 559
Score = 35.4 bits (80), Expect = 0.15
Identities = 16/38 (42%), Positives = 25/38 (65%)
Query: 111 EEHFEDMASDEDMKPKWEEEEMEEDLGEDEEEEEEDYE 148
E + E+ DE+ + + EEEE EED +D+ EEE++E
Sbjct: 530 ETNKEEDEDDEEAEEEEEEEEEEEDEDDDDNNEEEEFE 567
Score = 33.5 bits (75), Expect = 0.57
Identities = 19/36 (52%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
Query: 121 EDMKPKWEEEEMEEDLGEDEEEEEEDYEDEEEEEDE 156
ED EEE EE ED+E+E+ED EEEEE E
Sbjct: 271 EDSSSSEAEEEEEE---EDDEKEKEDNSSEEEEEIE 303
Score = 33.1 bits (74), Expect = 0.74
Identities = 13/29 (44%), Positives = 20/29 (68%)
Query: 127 WEEEEMEEDLGEDEEEEEEDYEDEEEEED 155
W+ E E+ + EEEEE+ +DE+E+ED
Sbjct: 265 WKTELKEDSSSSEAEEEEEEEDDEKEKED 293
Score = 31.6 bits (70), Expect = 2.2
Identities = 12/26 (46%), Positives = 20/26 (76%)
Query: 131 EMEEDLGEDEEEEEEDYEDEEEEEDE 156
E++ED E EEEE+ ED+E+E+++
Sbjct: 268 ELKEDSSSSEAEEEEEEEDDEKEKED 293
Score = 30.4 bits (67), Expect = 4.8
Identities = 14/36 (38%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
Query: 122 DMKPKWEEEEMEEDLGEDEEEEEEDYEDEEEEEDEE 157
++K E EE+ E+EE++E++ ED EE+EE
Sbjct: 268 ELKEDSSSSEAEEE--EEEEDDEKEKEDNSSEEEEE 301
Score = 29.6 bits (65), Expect = 8.2
Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 9/58 (15%)
Query: 90 EEDAAREGTPGSPGRGREGPGEEHFEDMASDEDMKPKWEEEEMEEDLGEDEEEEEEDY 147
EE+ A+ G + +E ED E+ + + EEEE E+D +EEEE E Y
Sbjct: 521 EEEKAKSG---------DETNKEEDEDDEEAEEEEEEEEEEEDEDDDDNNEEEEFECY 569
>gi|155030232 proline, glutamic acid and leucine rich protein 1
[Homo sapiens]
Length = 1130
Score = 63.5 bits (153), Expect = 5e-10
Identities = 50/147 (34%), Positives = 63/147 (42%), Gaps = 21/147 (14%)
Query: 22 EARQQLPPDPP--AAPPGRARAAPDEDREPESARMQRAQMAALAAMRAAAAGLGHPASPG 79
E LPP PP A PP A P P A+ + ++ A A L P P
Sbjct: 793 EGLPPLPPPPPSGATPPPIAPTGPPTASPPVPAKEEPEELPA------APGPLPPPPPPP 846
Query: 80 GSEDGPPGSEEEDAAREGTPGSPGRGR----------EGPGEEHFEDMASDEDMKPKWEE 129
GP EGTPG G EE E+ +E+ + EE
Sbjct: 847 PPVPGPVTLPPPQLVPEGTPGGGGPPALEEDLTVININSSDEEEEEEEEEEEEEE---EE 903
Query: 130 EEMEEDLGEDEEEEEEDYEDEEEEEDE 156
EE EED E+EE+EEE +E+EEEEE+E
Sbjct: 904 EEEEEDFEEEEEDEEEYFEEEEEEEEE 930
>gi|55956788 nucleolin [Homo sapiens]
Length = 710
Score = 58.9 bits (141), Expect = 1e-08
Identities = 34/122 (27%), Positives = 62/122 (50%), Gaps = 2/122 (1%)
Query: 44 DEDREPESARMQRAQMAALAAMRAAAAGLGHPASPGGSEDGPPGSEEEDAAREGTPGSPG 103
+ED E E + AA+ A AA A ++ EE+D+ E +P
Sbjct: 157 EEDDEDEDEDEDEIEPAAMKAAAAAPASEDEDDEDDEDDEDDDDDEEDDSEEEAMETTPA 216
Query: 104 RGREGPG--EEHFEDMASDEDMKPKWEEEEMEEDLGEDEEEEEEDYEDEEEEEDEEGLGP 161
+G++ +++A DED + E+E+ ++D ++++++E+D E+EEEEE+E
Sbjct: 217 KGKKAAKVVPVKAKNVAEDEDEEEDDEDEDDDDDEDDEDDDDEDDEEEEEEEEEEPVKEA 276
Query: 162 PG 163
PG
Sbjct: 277 PG 278
Score = 45.8 bits (107), Expect = 1e-04
Identities = 38/160 (23%), Positives = 65/160 (40%), Gaps = 15/160 (9%)
Query: 28 PPDPPAAPPGRARAAPDEDREPESARMQRAQMAALAAMRAAAAGLGHPASPG-------- 79
P A PG+ AA P + A+ + A G A+PG
Sbjct: 77 PAKKAAVTPGKKAAAT-----PAKKTVTPAKAVTTPGKKGATPGKALVATPGKKGAAIPA 131
Query: 80 -GSEDGPPGSEEEDAAREGTPGSPGRGREGPGEEHFEDMASDEDMKPKWEEEEMEEDLGE 138
G+++G +++ED+ E S + E+ ED MK E++ E
Sbjct: 132 KGAKNGK-NAKKEDSDEEEDDDSEEDEEDDEDEDEDEDEIEPAAMKAAAAAPASEDEDDE 190
Query: 139 DEEEEEEDYEDEEEEEDEEGLGPPGPASLGTTALFPRKAQ 178
D+E++E+D +DEE++ +EE + + P KA+
Sbjct: 191 DDEDDEDDDDDEEDDSEEEAMETTPAKGKKAAKVVPVKAK 230
Score = 32.3 bits (72), Expect = 1.3
Identities = 16/34 (47%), Positives = 17/34 (50%)
Query: 546 APNKGGGGGGGSSSNAGGRGGNTGTSGGQAGPAG 579
A KG GG GG GG GG G GG+ G G
Sbjct: 645 AKPKGEGGFGGRGGGRGGFGGRGGGRGGRGGFGG 678
Score = 30.0 bits (66), Expect = 6.3
Identities = 14/29 (48%), Positives = 14/29 (48%)
Query: 551 GGGGGGSSSNAGGRGGNTGTSGGQAGPAG 579
GGG GG GGRGG G G G G
Sbjct: 657 GGGRGGFGGRGGGRGGRGGFGGRGRGGFG 685
>gi|110618244 retinoblastoma binding protein 2 isoform 1 [Homo
sapiens]
Length = 1690
Score = 58.9 bits (141), Expect = 1e-08
Identities = 39/123 (31%), Positives = 69/123 (56%), Gaps = 8/123 (6%)
Query: 216 QPP---DHGDWTYEEQFKQLYELDGDPK-RKEFLDDLFSFMQKRGTPVNRIPIMAKQVLD 271
QPP + + + + ++L EL+ + R +FLD L F + +G+ + +IP++ +++LD
Sbjct: 58 QPPFACEVKSFRFTPRVQRLNELEAMTRVRLDFLDQLAKFWELQGSTL-KIPVVERKILD 116
Query: 272 LFMLYVLVTEKGGLVEVINKKLWREITKGLN-LPTSITSAAFTLRTQYMKYLYPYECEKR 330
L+ L +V KGG V +K W ++ L LP T + L++ Y + LYPYE +
Sbjct: 117 LYALSKIVASKGGFEMVTKEKKWSKVGSRLGYLPGKGTGS--LLKSHYERILYPYELFQS 174
Query: 331 GLS 333
G+S
Sbjct: 175 GVS 177
>gi|110618242 retinoblastoma binding protein 2 isoform 2 [Homo
sapiens]
Length = 1641
Score = 58.9 bits (141), Expect = 1e-08
Identities = 39/123 (31%), Positives = 69/123 (56%), Gaps = 8/123 (6%)
Query: 216 QPP---DHGDWTYEEQFKQLYELDGDPK-RKEFLDDLFSFMQKRGTPVNRIPIMAKQVLD 271
QPP + + + + ++L EL+ + R +FLD L F + +G+ + +IP++ +++LD
Sbjct: 58 QPPFACEVKSFRFTPRVQRLNELEAMTRVRLDFLDQLAKFWELQGSTL-KIPVVERKILD 116
Query: 272 LFMLYVLVTEKGGLVEVINKKLWREITKGLN-LPTSITSAAFTLRTQYMKYLYPYECEKR 330
L+ L +V KGG V +K W ++ L LP T + L++ Y + LYPYE +
Sbjct: 117 LYALSKIVASKGGFEMVTKEKKWSKVGSRLGYLPGKGTGS--LLKSHYERILYPYELFQS 174
Query: 331 GLS 333
G+S
Sbjct: 175 GVS 177
>gi|33946282 hypothetical protein LOC25962 isoform 1 [Homo sapiens]
Length = 1812
Score = 57.8 bits (138), Expect = 3e-08
Identities = 49/164 (29%), Positives = 71/164 (43%), Gaps = 26/164 (15%)
Query: 24 RQQLPPDPPAAPPGRARAAPDEDREPESARMQRAQMAALAAMRAAAAGLGHPASP---GG 80
R PP PP PP + + P R P+ A ++ + R G P P
Sbjct: 136 RDSPPPPPPPPPPPQPQ--PSLKRNPKHADGEKEDQFNGSPPRPQPRGPRTPPGPPPPDD 193
Query: 81 SEDGP-----PGSEEEDAAREGT---PGSPGRGREGPGEEHFEDMASDEDMKPKWEEEEM 132
ED P G +EEDA P SP R ++ ++ +E+ + + EE+E
Sbjct: 194 DEDDPVPLPVSGDKEEDAPHREDYFEPISPDRNSVPQEGQYSDEGEVEEEQQEEGEEDED 253
Query: 133 EEDLGEDEEE-------------EEEDYEDEEEEEDEEGLGPPG 163
+ D+ E+E+E EEE+ E+EE EEDEEG G G
Sbjct: 254 DVDVEEEEDEDEDDRRTVDSIPEEEEEDEEEEGEEDEEGEGDDG 297
>gi|33946280 hypothetical protein LOC25962 isoform 2 [Homo sapiens]
Length = 1147
Score = 57.8 bits (138), Expect = 3e-08
Identities = 49/164 (29%), Positives = 71/164 (43%), Gaps = 26/164 (15%)
Query: 24 RQQLPPDPPAAPPGRARAAPDEDREPESARMQRAQMAALAAMRAAAAGLGHPASP---GG 80
R PP PP PP + + P R P+ A ++ + R G P P
Sbjct: 136 RDSPPPPPPPPPPPQPQ--PSLKRNPKHADGEKEDQFNGSPPRPQPRGPRTPPGPPPPDD 193
Query: 81 SEDGP-----PGSEEEDAAREGT---PGSPGRGREGPGEEHFEDMASDEDMKPKWEEEEM 132
ED P G +EEDA P SP R ++ ++ +E+ + + EE+E
Sbjct: 194 DEDDPVPLPVSGDKEEDAPHREDYFEPISPDRNSVPQEGQYSDEGEVEEEQQEEGEEDED 253
Query: 133 EEDLGEDEEE-------------EEEDYEDEEEEEDEEGLGPPG 163
+ D+ E+E+E EEE+ E+EE EEDEEG G G
Sbjct: 254 DVDVEEEEDEDEDDRRTVDSIPEEEEEDEEEEGEEDEEGEGDDG 297
>gi|17975763 myelin transcription factor 1 [Homo sapiens]
Length = 1121
Score = 57.4 bits (137), Expect = 4e-08
Identities = 44/124 (35%), Positives = 60/124 (48%), Gaps = 15/124 (12%)
Query: 81 SEDGPPGSEEEDAAREGTPGSPGRGREGPGEEHFEDMASDEDMKPKWEEEEMEEDLGEDE 140
S+D P S E+ A+ E S +G EE E+ +E+ + EEEE EE+ E+E
Sbjct: 232 SQDLCPQSLEDAASEES---SKQKGILSHEEEDEEEEEEEEEEEEDEEEEEEEEEEEEEE 288
Query: 141 EEEEEDYEDEEEEEDEEGLGPPGPASLGTTALFPRKAQPPQAFRGDGVPRVLGGQERPGP 200
EEEEE+ E+EEEEE+EE P T+ +KA L G E P P
Sbjct: 289 EEEEEEEEEEEEEEEEEEAAPDVIFQEDTSHTSAQKAPE------------LRGPESPSP 336
Query: 201 GPAH 204
P +
Sbjct: 337 KPEY 340
Score = 35.4 bits (80), Expect = 0.15
Identities = 36/115 (31%), Positives = 44/115 (38%), Gaps = 50/115 (43%)
Query: 90 EEDAAREGTPGSPGRGREGPGEEHFEDMASDE------------------------DMKP 125
EED G PG G +E E AS+E D+ P
Sbjct: 181 EEDL---GQAAKPGPGIVHLLQEAAEGAASEEGEKGLFIQPEDAEEVVEVTTERSQDLCP 237
Query: 126 K-----------------------WEEEEMEEDLGEDEEEEEEDYEDEEEEEDEE 157
+ EEEE EE+ EDEEEEEE+ E+EEEEE+EE
Sbjct: 238 QSLEDAASEESSKQKGILSHEEEDEEEEEEEEEEEEDEEEEEEEEEEEEEEEEEE 292
>gi|94536805 splicing factor YT521-B isoform 2 [Homo sapiens]
Length = 709
Score = 57.4 bits (137), Expect = 4e-08
Identities = 38/114 (33%), Positives = 58/114 (50%), Gaps = 3/114 (2%)
Query: 44 DEDREPESARMQRAQMAALAAMRAAAAGLGHPASPGGSEDGPPGSEEEDAAREGTPGSPG 103
D +R +S ++ L R A+ SE+ GS+ E + G+ G
Sbjct: 139 DPERRAKSPTPDGSERIGLEVDRRASRSSQSSKEEVNSEEY--GSDHETGS-SGSSDEQG 195
Query: 104 RGREGPGEEHFEDMASDEDMKPKWEEEEMEEDLGEDEEEEEEDYEDEEEEEDEE 157
E E ED+ DE+++ EE+E ++ GE+EEEEEE+ E+EEEEE+EE
Sbjct: 196 NNTENEEEGVEEDVEEDEEVEEDAEEDEEVDEDGEEEEEEEEEEEEEEEEEEEE 249
Score = 55.1 bits (131), Expect = 2e-07
Identities = 42/126 (33%), Positives = 57/126 (45%), Gaps = 15/126 (11%)
Query: 35 PPGRARAAPDEDREPESARMQRAQMAALAAMRAAAAGLGHPASPGGSED--GPPGSEEED 92
P G R + DR R R+ ++ + + G H GS D G EE+
Sbjct: 149 PDGSERIGLEVDR-----RASRSSQSSKEEVNSEEYGSDHETGSSGSSDEQGNNTENEEE 203
Query: 93 AAREGTPGSPGRGREGPGEEHFEDMASDEDMKPKWEEEEMEEDLGEDEEEEEEDYEDEEE 152
E E E+ ED DED + + EEEE EE E+EEEEEE+YE +E
Sbjct: 204 GVEEDVEED-----EEVEEDAEEDEEVDEDGEEEEEEEEEEE---EEEEEEEEEYEQDER 255
Query: 153 EEDEEG 158
++ EEG
Sbjct: 256 DQKEEG 261
>gi|72534750 splicing factor YT521-B isoform 1 [Homo sapiens]
Length = 727
Score = 57.4 bits (137), Expect = 4e-08
Identities = 38/114 (33%), Positives = 58/114 (50%), Gaps = 3/114 (2%)
Query: 44 DEDREPESARMQRAQMAALAAMRAAAAGLGHPASPGGSEDGPPGSEEEDAAREGTPGSPG 103
D +R +S ++ L R A+ SE+ GS+ E + G+ G
Sbjct: 139 DPERRAKSPTPDGSERIGLEVDRRASRSSQSSKEEVNSEEY--GSDHETGS-SGSSDEQG 195
Query: 104 RGREGPGEEHFEDMASDEDMKPKWEEEEMEEDLGEDEEEEEEDYEDEEEEEDEE 157
E E ED+ DE+++ EE+E ++ GE+EEEEEE+ E+EEEEE+EE
Sbjct: 196 NNTENEEEGVEEDVEEDEEVEEDAEEDEEVDEDGEEEEEEEEEEEEEEEEEEEE 249
Score = 55.1 bits (131), Expect = 2e-07
Identities = 42/126 (33%), Positives = 57/126 (45%), Gaps = 15/126 (11%)
Query: 35 PPGRARAAPDEDREPESARMQRAQMAALAAMRAAAAGLGHPASPGGSED--GPPGSEEED 92
P G R + DR R R+ ++ + + G H GS D G EE+
Sbjct: 149 PDGSERIGLEVDR-----RASRSSQSSKEEVNSEEYGSDHETGSSGSSDEQGNNTENEEE 203
Query: 93 AAREGTPGSPGRGREGPGEEHFEDMASDEDMKPKWEEEEMEEDLGEDEEEEEEDYEDEEE 152
E E E+ ED DED + + EEEE EE E+EEEEEE+YE +E
Sbjct: 204 GVEEDVEED-----EEVEEDAEEDEEVDEDGEEEEEEEEEEE---EEEEEEEEEYEQDER 255
Query: 153 EEDEEG 158
++ EEG
Sbjct: 256 DQKEEG 261
>gi|109255243 jumonji, AT rich interactive domain 1C isoform 1 [Homo
sapiens]
Length = 1560
Score = 57.0 bits (136), Expect = 5e-08
Identities = 36/135 (26%), Positives = 69/135 (51%), Gaps = 8/135 (5%)
Query: 203 AHPGGAAHVAPQL--QPP---DHGDWTYEEQFKQLYELDGDPKRK-EFLDDLFSFMQKRG 256
A G + P QPP + ++ + + ++L EL+ + K +LD + F + +G
Sbjct: 38 AEKSGICKIRPPADWQPPFAVEVDNFRFTPRIQRLNELEAQTRVKLNYLDQIAKFWEIQG 97
Query: 257 TPVNRIPIMAKQVLDLFMLYVLVTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRT 316
+ + +IP + +++LDL+ L +V E+GG + + W + + LN P + LR+
Sbjct: 98 SSL-KIPNVERRILDLYSLSKIVVEEGGYEAICKDRRWARVAQRLNYPPG-KNIGSLLRS 155
Query: 317 QYMKYLYPYECEKRG 331
Y + +YPYE + G
Sbjct: 156 HYERIVYPYEMYQSG 170
Score = 30.4 bits (67), Expect = 4.8
Identities = 23/65 (35%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
Query: 100 GSPGRGREGPGEEHFEDMASDEDMKPKWEEEEMEEDLGEDEEEEEEDYEDEEEEEDEEGL 159
GS RGR + E P EE E + + E EE E+EE EE+ G
Sbjct: 1447 GSRARGRALERRRRRKVDRGGEGDDPAREELEPKR-VRSSGPEAEEVQEEEELEEETGGE 1505
Query: 160 GPPGP 164
GPP P
Sbjct: 1506 GPPAP 1510
>gi|78190492 retinitis pigmentosa GTPase regulator isoform C [Homo
sapiens]
Length = 1152
Score = 56.2 bits (134), Expect = 8e-08
Identities = 36/85 (42%), Positives = 44/85 (51%), Gaps = 3/85 (3%)
Query: 79 GGSEDGPPGSEEEDAAREGTPGSPGRGREGPG---EEHFEDMASDEDMKPKWEEEEMEED 135
G E+G EEE+ EG G G EG G EE E +E+ + + EEE E+
Sbjct: 948 GEEEEGEWEGEEEEGEGEGEEEGEGEGEEGEGEGEEEEGEGEGEEEEGEEEGEEEGEGEE 1007
Query: 136 LGEDEEEEEEDYEDEEEEEDEEGLG 160
GE E EEEE+ E E E E EEG G
Sbjct: 1008 EGEGEGEEEEEGEVEGEVEGEEGEG 1032
Score = 52.0 bits (123), Expect = 2e-06
Identities = 32/80 (40%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Query: 80 GSEDGPPGSEEEDAAREGTPGSPGRGREGPGEEHFEDMASDEDMKPKWEEEEMEEDLGED 139
G E+G EEE+ EG G G E GE E+ + + + + EE E E + GE
Sbjct: 887 GEEEGEGEGEEEEGEGEGEEEGEGEGEEEEGEGKGEEEGEEGEGEGEEEEGEGEGEDGEG 946
Query: 140 E-EEEEEDYEDEEEEEDEEG 158
E EEEE ++E EEEE + EG
Sbjct: 947 EGEEEEGEWEGEEEEGEGEG 966
Score = 50.1 bits (118), Expect = 6e-06
Identities = 34/88 (38%), Positives = 44/88 (50%), Gaps = 10/88 (11%)
Query: 80 GSEDGPPGSEEEDAAREGTPGSPGRGREGPGEEHFEDMASDEDMKPKWEEEEMEEDLGED 139
G E+ G EE+ EG G G G E GE E+ +E+ + + E EE E GE+
Sbjct: 957 GEEEEGEGEGEEEGEGEGEEGE-GEGEEEEGEGEGEEEEGEEEGEEEGEGEEEGEGEGEE 1015
Query: 140 EEE---------EEEDYEDEEEEEDEEG 158
EEE EE + E EEEE +EEG
Sbjct: 1016 EEEGEVEGEVEGEEGEGEGEEEEGEEEG 1043
Score = 48.5 bits (114), Expect = 2e-05
Identities = 39/88 (44%), Positives = 46/88 (52%), Gaps = 10/88 (11%)
Query: 80 GSEDGPPGS---EEEDAAREGTPGSPGRGRE----GPGEEHFEDMASDEDMKPKWEEEEM 132
G E+G G EEE+ EG G G E G GEE E +E+ + K EEE
Sbjct: 867 GEEEGEEGEGEGEEEEGEGEGEEEGEGEGEEEEGEGEGEEEGEGEGEEEEGEGKGEEEG- 925
Query: 133 EEDLGEDEEEE-EEDYED-EEEEEDEEG 158
EE GE EEEE E + ED E E E+EEG
Sbjct: 926 EEGEGEGEEEEGEGEGEDGEGEGEEEEG 953
Score = 47.0 bits (110), Expect = 5e-05
Identities = 40/132 (30%), Positives = 56/132 (42%), Gaps = 11/132 (8%)
Query: 79 GGSEDGPPGSEEEDAAREGTPGSPGRGREGPGEEHFEDMASDEDMKPKWEEEEMEEDLGE 138
GG E+ G EEE+ RE G G+E E E E+ + K EE +E+ GE
Sbjct: 730 GGEEEHGEG-EEEEGDREEEEEKEGEGKEEGEGEEVEGEREKEEGERKKEERAGKEEKGE 788
Query: 139 DE----EEEEEDYEDEEEEEDEEGLGPPGPASLGTTALFPRKAQPPQAFRGDGVPRVLGG 194
+E E EEE+ E EE++E G G G + + + G+G G
Sbjct: 789 EEGDQGEGEEEETEGRGEEKEEGGEVEGGEVEEG------KGEREEEEEEGEGEEEEGEG 842
Query: 195 QERPGPGPAHPG 206
+E G G G
Sbjct: 843 EEEEGEGEEEEG 854
Score = 46.6 bits (109), Expect = 6e-05
Identities = 43/149 (28%), Positives = 63/149 (42%), Gaps = 31/149 (20%)
Query: 42 APDEDREPESARMQRAQMAALAAMRAAAAGLGHPASPGGSEDGPPGSEE----------- 90
A +E+ + R ++ ++ + A G S G +EDGP G +
Sbjct: 608 ANEENVKVHGGRKEKTEILSDDLTDKAEVSEGKAKSVGEAEDGPEGRGDGTCEEGSSGAE 667
Query: 91 --EDAAREGTPGSPGRGR-EGPGEEHFEDMASDEDMKPKWEEE----------------E 131
+D RE GRG E PGE +++A E+ K + EE E
Sbjct: 668 HWQDEEREKGEKDKGRGEMERPGEGE-KELAEKEEWKKRDGEEQEQKEREQGHQKERNQE 726
Query: 132 MEEDLGEDEEEEEEDYEDEEEEEDEEGLG 160
MEE E+ E EE+ D EEEE++EG G
Sbjct: 727 MEEGGEEEHGEGEEEEGDREEEEEKEGEG 755
Score = 46.6 bits (109), Expect = 6e-05
Identities = 35/92 (38%), Positives = 44/92 (47%), Gaps = 5/92 (5%)
Query: 71 GLGHPASPGGSEDGPPGSEEEDAAREGTP--GSPGRGREGPGEEHFEDMASDEDMKPKWE 128
G G G E+G EEE+ EG G EG GEE E +E+
Sbjct: 964 GEGEEEGEGEGEEGEGEGEEEEGEGEGEEEEGEEEGEEEGEGEEEGEGEGEEEEEGEV-- 1021
Query: 129 EEEMEEDLGEDEEEEEEDYEDEEEEEDEEGLG 160
E E+E + GE E EEEE E+E EE ++EG G
Sbjct: 1022 EGEVEGEEGEGEGEEEEG-EEEGEEREKEGEG 1052
Score = 46.2 bits (108), Expect = 8e-05
Identities = 38/98 (38%), Positives = 44/98 (44%), Gaps = 8/98 (8%)
Query: 71 GLGHPASPGGSEDGPPGSEEEDAAREGTPGSPGRGREGPGE-EHFEDMASDEDMKPKWEE 129
G G G +G E E EG G EG GE E E ED + + EE
Sbjct: 891 GEGEGEEEEGEGEGEEEGEGEGEEEEGEGKGEEEGEEGEGEGEEEEGEGEGEDGEGEGEE 950
Query: 130 E----EMEEDLGEDEEEEEEDYEDEE---EEEDEEGLG 160
E E EE+ GE E EEE + E EE E E+EEG G
Sbjct: 951 EEGEWEGEEEEGEGEGEEEGEGEGEEGEGEGEEEEGEG 988
Score = 45.8 bits (107), Expect = 1e-04
Identities = 46/165 (27%), Positives = 61/165 (36%), Gaps = 14/165 (8%)
Query: 71 GLGHPASPGGSEDGPPGSEEEDAAREGTPGSPGRGREGPGEEHFEDMASDEDMKPKWEEE 130
G G GG +G E + E G EG GEE E +E+ + K EEE
Sbjct: 803 GRGEEKEEGGEVEGGEVEEGKGEREEEEEEGEGEEEEGEGEEE-EGEGEEEEGEGKGEEE 861
Query: 131 EMEEDLGEDEEEEEEDYEDEEEEEDEEGLGPPGPASLGTTALFPRKAQPPQAFRGDGVPR 190
GE+ E EEE E E E E+EEG G G + + + G+G
Sbjct: 862 ------GEEGEGEEEGEEGEGEGEEEEGEGEGEEEGEGEGEEEEGEGEGEEEGEGEGEEE 915
Query: 191 ------VLGGQERPGPGPAHPG-GAAHVAPQLQPPDHGDWTYEEQ 228
G+E G G G G + G+W EE+
Sbjct: 916 EGEGKGEEEGEEGEGEGEEEEGEGEGEDGEGEGEEEEGEWEGEEE 960
Score = 45.8 bits (107), Expect = 1e-04
Identities = 37/89 (41%), Positives = 45/89 (50%), Gaps = 12/89 (13%)
Query: 80 GSEDGPPGSEEEDAA----REGTPGSPGRGREGPGEEHFEDMASD-EDMKPKWEEEEMEE 134
G E+G EEE+ EG G G G E GE ED + E+ + +WE EE EE
Sbjct: 904 GEEEGEGEGEEEEGEGKGEEEGEEGE-GEGEEEEGEGEGEDGEGEGEEEEGEWEGEE-EE 961
Query: 135 DLGEDEEE-----EEEDYEDEEEEEDEEG 158
GE EEE EE + E EEEE + EG
Sbjct: 962 GEGEGEEEGEGEGEEGEGEGEEEEGEGEG 990
Score = 45.8 bits (107), Expect = 1e-04
Identities = 35/83 (42%), Positives = 44/83 (53%), Gaps = 8/83 (9%)
Query: 80 GSEDGPPGS---EEEDAAREGTPGSPGRGREGPGEEHFEDMASDEDMKPKWEEEEMEEDL 136
G E+G G EEE+ EG G G G E GE E+ + + + EE E E +
Sbjct: 921 GEEEGEEGEGEGEEEEGEGEGEDGE-GEGEEEEGEWEGEEEEGEGEGE---EEGEGEGEE 976
Query: 137 GEDE-EEEEEDYEDEEEEEDEEG 158
GE E EEEE + E EEEE +EEG
Sbjct: 977 GEGEGEEEEGEGEGEEEEGEEEG 999
Score = 45.1 bits (105), Expect = 2e-04
Identities = 35/91 (38%), Positives = 44/91 (48%), Gaps = 11/91 (12%)
Query: 80 GSEDGPPGSEEEDAAR-------EGTPGSPGRGREGPGE---EHFEDMASDEDMKPKWEE 129
G E+G G EE+ EG G EG GE E E +E+ + + EE
Sbjct: 787 GEEEGDQGEGEEEETEGRGEEKEEGGEVEGGEVEEGKGEREEEEEEGEGEEEEGEGEEEE 846
Query: 130 EEMEEDLGEDEEEEEEDYEDEEEEEDEEGLG 160
E EE+ GE + EEE + E E EEE EEG G
Sbjct: 847 GEGEEEEGEGKGEEEGE-EGEGEEEGEEGEG 876
Score = 45.1 bits (105), Expect = 2e-04
Identities = 33/91 (36%), Positives = 44/91 (48%), Gaps = 5/91 (5%)
Query: 71 GLGHPASPGGSEDGPPGSEEEDAAREGTPGSPGRGREGPGEEHFEDMASDEDMKPKWEEE 130
G G G + G EE + EG G G E E E E+ + + EEE
Sbjct: 979 GEGEEEEGEGEGEEEEGEEEGEEEGEGEEEGEGEGEE-EEEGEVEGEVEGEEGEGEGEEE 1037
Query: 131 EMEEDLGEDEEEE---EEDYEDEEEEEDEEG 158
E EE+ GE+ E+E EE+ + EEEE+EEG
Sbjct: 1038 EGEEE-GEEREKEGEGEENRRNREEEEEEEG 1067
Score = 43.9 bits (102), Expect = 4e-04
Identities = 28/77 (36%), Positives = 38/77 (49%), Gaps = 3/77 (3%)
Query: 80 GSEDGPPGSEEEDAAREGTPGSPGRGREGPGEEHFEDMASDEDMKPKWEEEEMEEDLGED 139
G E+G EEE+ EG G EG GE E+ + + + K E E E+
Sbjct: 1005 GEEEGEGEGEEEE---EGEVEGEVEGEEGEGEGEEEEGEEEGEEREKEGEGEENRRNREE 1061
Query: 140 EEEEEEDYEDEEEEEDE 156
EEEEE Y++ EEE+E
Sbjct: 1062 EEEEEGKYQETGEEENE 1078
Score = 41.6 bits (96), Expect = 0.002
Identities = 41/127 (32%), Positives = 55/127 (43%), Gaps = 15/127 (11%)
Query: 44 DEDREPESARMQRAQMAALAAMRAAAAGLGHPASPGGSEDGPPGSEEEDAAREGTPGSPG 103
+E+ E E + + + R G G E+ G EE D + G
Sbjct: 746 EEEEEKEGEGKEEGEGEEVEGEREKEEGERKKEERAGKEE--KGEEEGDQGEGEEEETEG 803
Query: 104 RGREGPGEEHFEDMASDEDMKPKWE-EEEMEEDLGEDEE----EEEEDYEDEE-----EE 153
RG E +E ++ E + K E EEE EE GE+EE EEE + E+EE EE
Sbjct: 804 RGEE---KEEGGEVEGGEVEEGKGEREEEEEEGEGEEEEGEGEEEEGEGEEEEGEGKGEE 860
Query: 154 EDEEGLG 160
E EEG G
Sbjct: 861 EGEEGEG 867
Score = 34.3 bits (77), Expect = 0.33
Identities = 20/54 (37%), Positives = 29/54 (53%)
Query: 107 EGPGEEHFEDMASDEDMKPKWEEEEMEEDLGEDEEEEEEDYEDEEEEEDEEGLG 160
EG EEH E + D + + E+E ++ GE EE E E ++E E + EE G
Sbjct: 729 EGGEEEHGEGEEEEGDREEEEEKEGEGKEEGEGEEVEGEREKEEGERKKEERAG 782
Score = 33.1 bits (74), Expect = 0.74
Identities = 25/71 (35%), Positives = 35/71 (49%), Gaps = 4/71 (5%)
Query: 87 GSEEEDAARE-GTPGSPGRGREGPGEEHFEDMASDEDMKPKWEEEEMEEDLGEDEEEEEE 145
G E+E RE G + E GEE + +E + EEEE +E G++E E EE
Sbjct: 707 GEEQEQKEREQGHQKERNQEMEEGGEEEHGEGEEEEGDR---EEEEEKEGEGKEEGEGEE 763
Query: 146 DYEDEEEEEDE 156
+ E+EE E
Sbjct: 764 VEGEREKEEGE 774
>gi|166795264 AE binding protein 2 isoform b [Homo sapiens]
Length = 517
Score = 56.2 bits (134), Expect = 8e-08
Identities = 58/208 (27%), Positives = 76/208 (36%), Gaps = 30/208 (14%)
Query: 20 ELEARQQLPPDPPAAP--PGRARAAPDEDREPESARMQRAQMAALAAMRAAAAGLGHPAS 77
+LE +L P PP +P R RA P E+ E E + A+ A+AA+ G
Sbjct: 10 DLEELSRLSPLPPGSPGSAARGRAEPPEEEEEEEEEEEEAEAEAVAALLLNG---GSGGG 66
Query: 78 PGGSEDGPPGSEEEDAAREGTPGSPGRGREGPGEEHFEDMASDEDMKPKWEEEEMEEDLG 137
GG G G E E T P S E E+E+ EED
Sbjct: 67 GGGGGGGVGGGEAE------TMSEP----------------SPESASQAGEDEDEEEDDE 104
Query: 138 EDEEEEEEDYEDEEEEEDEEGLGPPGPASLGTTALFPRKAQPPQAFRGDGVPRVLGGQER 197
E+E+E EEE E +G G +S T A + GDG G +E
Sbjct: 105 EEEDESSSSGGGEEESSAESLVGSSGGSSSDETRSLSPGAASSSSGDGDGKE---GLEEP 161
Query: 198 PGPGPAHPGGAAHVAPQLQPPDHGDWTY 225
GP + GG + GD Y
Sbjct: 162 KGPRGSQGGGGGGSSSSSVVSSGGDEGY 189
Score = 33.9 bits (76), Expect = 0.43
Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 10/45 (22%)
Query: 548 NKGGGGGGGSSSN----------AGGRGGNTGTSGGQAGPAGLST 582
++GGGGGG SSS+ G GG++ TSGG+ G +S+
Sbjct: 167 SQGGGGGGSSSSSVVSSGGDEGYGTGGGGSSATSGGRRGSLEMSS 211
>gi|166795262 AE binding protein 2 isoform a [Homo sapiens]
Length = 503
Score = 56.2 bits (134), Expect = 8e-08
Identities = 58/208 (27%), Positives = 76/208 (36%), Gaps = 30/208 (14%)
Query: 20 ELEARQQLPPDPPAAP--PGRARAAPDEDREPESARMQRAQMAALAAMRAAAAGLGHPAS 77
+LE +L P PP +P R RA P E+ E E + A+ A+AA+ G
Sbjct: 10 DLEELSRLSPLPPGSPGSAARGRAEPPEEEEEEEEEEEEAEAEAVAALLLNG---GSGGG 66
Query: 78 PGGSEDGPPGSEEEDAAREGTPGSPGRGREGPGEEHFEDMASDEDMKPKWEEEEMEEDLG 137
GG G G E E T P S E E+E+ EED
Sbjct: 67 GGGGGGGVGGGEAE------TMSEP----------------SPESASQAGEDEDEEEDDE 104
Query: 138 EDEEEEEEDYEDEEEEEDEEGLGPPGPASLGTTALFPRKAQPPQAFRGDGVPRVLGGQER 197
E+E+E EEE E +G G +S T A + GDG G +E
Sbjct: 105 EEEDESSSSGGGEEESSAESLVGSSGGSSSDETRSLSPGAASSSSGDGDGKE---GLEEP 161
Query: 198 PGPGPAHPGGAAHVAPQLQPPDHGDWTY 225
GP + GG + GD Y
Sbjct: 162 KGPRGSQGGGGGGSSSSSVVSSGGDEGY 189
Score = 33.9 bits (76), Expect = 0.43
Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 10/45 (22%)
Query: 548 NKGGGGGGGSSSN----------AGGRGGNTGTSGGQAGPAGLST 582
++GGGGGG SSS+ G GG++ TSGG+ G +S+
Sbjct: 167 SQGGGGGGSSSSSVVSSGGDEGYGTGGGGSSATSGGRRGSLEMSS 211
>gi|119709834 castor homolog 1, zinc finger isoform a [Homo sapiens]
Length = 1759
Score = 55.5 bits (132), Expect = 1e-07
Identities = 34/101 (33%), Positives = 55/101 (54%), Gaps = 10/101 (9%)
Query: 57 AQMAALAAMRAAAAGLGHPASPGGSEDGPPGSEEEDAAREGTPGSPGRGREGPGEEHFED 116
A+ +L +++AAAGLG G + GPP DAA G P G E
Sbjct: 1624 AEPGSLLFLQSAAAGLGLALGDAG-DPGPP-----DAAAPG----PREGAAAAAAAAGES 1673
Query: 117 MASDEDMKPKWEEEEMEEDLGEDEEEEEEDYEDEEEEEDEE 157
DE+ + + EEE E+D ED++E+++D +D+E+++DE+
Sbjct: 1674 SQEDEEEELELPEEEAEDDEDEDDDEDDDDEDDDEDDDDED 1714
>gi|33356560 jumonji, AT rich interactive domain 1D isoform 2 [Homo
sapiens]
Length = 1539
Score = 54.7 bits (130), Expect = 2e-07
Identities = 35/138 (25%), Positives = 71/138 (51%), Gaps = 8/138 (5%)
Query: 203 AHPGGAAHVAPQL--QPP---DHGDWTYEEQFKQLYELDGDPKRK-EFLDDLFSFMQKRG 256
A G + P QPP + ++ + + ++L EL+ + K +LD + F + +G
Sbjct: 38 AEKSGICKIRPPADWQPPFAVEVDNFRFTPRVQRLNELEAQTRVKLNYLDQIAKFWEIQG 97
Query: 257 TPVNRIPIMAKQVLDLFMLYVLVTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRT 316
+ + +IP + +++LDL+ L +V E+GG + + W + + L+ P + LR+
Sbjct: 98 SSL-KIPNVERKILDLYSLSKIVIEEGGYEAICKDRRWARVAQRLHYPPG-KNIGSLLRS 155
Query: 317 QYMKYLYPYECEKRGLSN 334
Y + +YPYE + G ++
Sbjct: 156 HYERIIYPYEMFQSGANH 173
>gi|226442991 jumonji, AT rich interactive domain 1D isoform 1 [Homo
sapiens]
Length = 1570
Score = 54.7 bits (130), Expect = 2e-07
Identities = 35/138 (25%), Positives = 71/138 (51%), Gaps = 8/138 (5%)
Query: 203 AHPGGAAHVAPQL--QPP---DHGDWTYEEQFKQLYELDGDPKRK-EFLDDLFSFMQKRG 256
A G + P QPP + ++ + + ++L EL+ + K +LD + F + +G
Sbjct: 38 AEKSGICKIRPPADWQPPFAVEVDNFRFTPRVQRLNELEAQTRVKLNYLDQIAKFWEIQG 97
Query: 257 TPVNRIPIMAKQVLDLFMLYVLVTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRT 316
+ + +IP + +++LDL+ L +V E+GG + + W + + L+ P + LR+
Sbjct: 98 SSL-KIPNVERKILDLYSLSKIVIEEGGYEAICKDRRWARVAQRLHYPPG-KNIGSLLRS 155
Query: 317 QYMKYLYPYECEKRGLSN 334
Y + +YPYE + G ++
Sbjct: 156 HYERIIYPYEMFQSGANH 173
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.309 0.129 0.366
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,591,081
Number of Sequences: 37866
Number of extensions: 1930566
Number of successful extensions: 53066
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 879
Number of HSP's successfully gapped in prelim test: 1116
Number of HSP's that attempted gapping in prelim test: 21172
Number of HSP's gapped (non-prelim): 17002
length of query: 593
length of database: 18,247,518
effective HSP length: 108
effective length of query: 485
effective length of database: 14,157,990
effective search space: 6866625150
effective search space used: 6866625150
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 65 (29.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.