BLASTP 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|4885193 AT rich interactive domain 3A (BRIGHT- like) protein [Homo sapiens] (593 letters) Database: hs.faa 37,866 sequences; 18,247,518 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|4885193 AT rich interactive domain 3A (BRIGHT- like) protein ... 1182 0.0 gi|5453638 AT rich interactive domain 3B [Homo sapiens] 360 2e-99 gi|62865637 AT rich interactive domain 3C (BRIGHT- like) [Homo s... 296 5e-80 gi|40068466 AT rich interactive domain 1B (SWI1-like) isoform 1 ... 111 2e-24 gi|40068464 AT rich interactive domain 1B (SWI1-like) isoform 2 ... 104 2e-22 gi|40068462 AT rich interactive domain 1B (SWI1-like) isoform 3 ... 104 2e-22 gi|21264565 AT rich interactive domain 1A isoform a [Homo sapiens] 102 1e-21 gi|21264575 AT rich interactive domain 1A isoform b [Homo sapiens] 102 1e-21 gi|115334679 retinoblastoma-binding protein 1 isoform III [Homo ... 75 1e-13 gi|115334673 retinoblastoma-binding protein 1 isoform II [Homo s... 75 1e-13 gi|115334677 retinoblastoma-binding protein 1 isoform I [Homo sa... 75 1e-13 gi|56549668 AT rich interactive domain 2 (ARID, RFX-like) [Homo ... 74 4e-13 gi|22035679 AT rich interactive domain 4B isoform 2 [Homo sapiens] 72 1e-12 gi|22035677 AT rich interactive domain 4B isoform 1 [Homo sapiens] 72 1e-12 gi|155030232 proline, glutamic acid and leucine rich protein 1 [... 64 5e-10 gi|55956788 nucleolin [Homo sapiens] 59 1e-08 gi|110618244 retinoblastoma binding protein 2 isoform 1 [Homo sa... 59 1e-08 gi|110618242 retinoblastoma binding protein 2 isoform 2 [Homo sa... 59 1e-08 gi|33946282 hypothetical protein LOC25962 isoform 1 [Homo sapiens] 58 3e-08 gi|33946280 hypothetical protein LOC25962 isoform 2 [Homo sapiens] 58 3e-08 gi|17975763 myelin transcription factor 1 [Homo sapiens] 57 4e-08 gi|94536805 splicing factor YT521-B isoform 2 [Homo sapiens] 57 4e-08 gi|72534750 splicing factor YT521-B isoform 1 [Homo sapiens] 57 4e-08 gi|109255243 jumonji, AT rich interactive domain 1C isoform 1 [H... 57 5e-08 gi|78190492 retinitis pigmentosa GTPase regulator isoform C [Hom... 56 8e-08 gi|166795264 AE binding protein 2 isoform b [Homo sapiens] 56 8e-08 gi|166795262 AE binding protein 2 isoform a [Homo sapiens] 56 8e-08 gi|119709834 castor homolog 1, zinc finger isoform a [Homo sapiens] 55 1e-07 gi|33356560 jumonji, AT rich interactive domain 1D isoform 2 [Ho... 55 2e-07 gi|226442991 jumonji, AT rich interactive domain 1D isoform 1 [H... 55 2e-07 >gi|4885193 AT rich interactive domain 3A (BRIGHT- like) protein [Homo sapiens] Length = 593 Score = 1182 bits (3058), Expect = 0.0 Identities = 593/593 (100%), Positives = 593/593 (100%) Query: 1 MKLQAVMETLLQRQQRARQELEARQQLPPDPPAAPPGRARAAPDEDREPESARMQRAQMA 60 MKLQAVMETLLQRQQRARQELEARQQLPPDPPAAPPGRARAAPDEDREPESARMQRAQMA Sbjct: 1 MKLQAVMETLLQRQQRARQELEARQQLPPDPPAAPPGRARAAPDEDREPESARMQRAQMA 60 Query: 61 ALAAMRAAAAGLGHPASPGGSEDGPPGSEEEDAAREGTPGSPGRGREGPGEEHFEDMASD 120 ALAAMRAAAAGLGHPASPGGSEDGPPGSEEEDAAREGTPGSPGRGREGPGEEHFEDMASD Sbjct: 61 ALAAMRAAAAGLGHPASPGGSEDGPPGSEEEDAAREGTPGSPGRGREGPGEEHFEDMASD 120 Query: 121 EDMKPKWEEEEMEEDLGEDEEEEEEDYEDEEEEEDEEGLGPPGPASLGTTALFPRKAQPP 180 EDMKPKWEEEEMEEDLGEDEEEEEEDYEDEEEEEDEEGLGPPGPASLGTTALFPRKAQPP Sbjct: 121 EDMKPKWEEEEMEEDLGEDEEEEEEDYEDEEEEEDEEGLGPPGPASLGTTALFPRKAQPP 180 Query: 181 QAFRGDGVPRVLGGQERPGPGPAHPGGAAHVAPQLQPPDHGDWTYEEQFKQLYELDGDPK 240 QAFRGDGVPRVLGGQERPGPGPAHPGGAAHVAPQLQPPDHGDWTYEEQFKQLYELDGDPK Sbjct: 181 QAFRGDGVPRVLGGQERPGPGPAHPGGAAHVAPQLQPPDHGDWTYEEQFKQLYELDGDPK 240 Query: 241 RKEFLDDLFSFMQKRGTPVNRIPIMAKQVLDLFMLYVLVTEKGGLVEVINKKLWREITKG 300 RKEFLDDLFSFMQKRGTPVNRIPIMAKQVLDLFMLYVLVTEKGGLVEVINKKLWREITKG Sbjct: 241 RKEFLDDLFSFMQKRGTPVNRIPIMAKQVLDLFMLYVLVTEKGGLVEVINKKLWREITKG 300 Query: 301 LNLPTSITSAAFTLRTQYMKYLYPYECEKRGLSNPNELQAAIDSNRREGRRQSFGGSLFA 360 LNLPTSITSAAFTLRTQYMKYLYPYECEKRGLSNPNELQAAIDSNRREGRRQSFGGSLFA Sbjct: 301 LNLPTSITSAAFTLRTQYMKYLYPYECEKRGLSNPNELQAAIDSNRREGRRQSFGGSLFA 360 Query: 361 YSPGGAHGMLSSPKLPVSSLGLAASTNGSSITPAPKIKKEEDSAIPITVPGRLPVSLAGH 420 YSPGGAHGMLSSPKLPVSSLGLAASTNGSSITPAPKIKKEEDSAIPITVPGRLPVSLAGH Sbjct: 361 YSPGGAHGMLSSPKLPVSSLGLAASTNGSSITPAPKIKKEEDSAIPITVPGRLPVSLAGH 420 Query: 421 PVVAAQAAAVQAAAAQAAVAAQAAALEQLREKLESAEPPEKKMALVADEQQRLMQRALQQ 480 PVVAAQAAAVQAAAAQAAVAAQAAALEQLREKLESAEPPEKKMALVADEQQRLMQRALQQ Sbjct: 421 PVVAAQAAAVQAAAAQAAVAAQAAALEQLREKLESAEPPEKKMALVADEQQRLMQRALQQ 480 Query: 481 NFLAMAAQLPMSIRINSQASESRQDSAVNLTGTNGSNSISMSVEINGIMYTGVLFAQPPA 540 NFLAMAAQLPMSIRINSQASESRQDSAVNLTGTNGSNSISMSVEINGIMYTGVLFAQPPA Sbjct: 481 NFLAMAAQLPMSIRINSQASESRQDSAVNLTGTNGSNSISMSVEINGIMYTGVLFAQPPA 540 Query: 541 PTPTSAPNKGGGGGGGSSSNAGGRGGNTGTSGGQAGPAGLSTPSTSTSNNSLP 593 PTPTSAPNKGGGGGGGSSSNAGGRGGNTGTSGGQAGPAGLSTPSTSTSNNSLP Sbjct: 541 PTPTSAPNKGGGGGGGSSSNAGGRGGNTGTSGGQAGPAGLSTPSTSTSNNSLP 593 >gi|5453638 AT rich interactive domain 3B [Homo sapiens] Length = 560 Score = 360 bits (925), Expect = 2e-99 Identities = 244/598 (40%), Positives = 320/598 (53%), Gaps = 105/598 (17%) Query: 7 METLLQRQQRARQELEARQQLPPDPPAAPPGRARAAPDEDREPESARMQRAQ-MAALAAM 65 ME L Q+QQ+ +Q+ + P P + A + ++ A+ AQ + + Sbjct: 1 MEPLQQQQQQQQQQQKQ--------PHLAPLQMDAREKQGQQMREAQFLYAQKLVTQPTL 52 Query: 66 RAAAAGLGHPASP-GGSEDGPPGSEEEDAAREGTPGSPGRGREGPGEEHFEDMASDEDMK 124 +A AG ++P G PP + G S + Sbjct: 53 LSATAGRPSGSTPLGPLARVPPTAAVAQVFERGNMNS----------------------E 90 Query: 125 PKWEEEEMEEDLGEDEEEEEEDYEDEEEEE--DEEGLGPPGPASLGTTALFPRKAQPPQA 182 P+ E+ +E++ G+DE E + E + + + + P + L P PP Sbjct: 91 PEEEDGGLEDEDGDDEVAEVAEKETQAASKYFHVQKVARQDPRVAPMSNLLPAPGLPPH- 149 Query: 183 FRGDGVPRVLGGQERPGPGPAHPGGAAHVAPQLQPPDHGDWTYEEQFKQ----------- 231 GQ+ H A+ +P + +W +EQ KQ Sbjct: 150 -----------GQQAKED---HTKDASKASPSVSTAGQPNWNLDEQLKQNGGLAWSDDAD 195 Query: 232 -------------LYELDGDPKRKEFLDDLFSFMQKRGTPVNRIPIMAKQVLDLFMLYVL 278 LYELDGDP+RKEFLDDLF FMQKRGTP+NRIPIMAKQ+LDL+MLY L Sbjct: 196 GGRGREISRDFAKLYELDGDPERKEFLDDLFVFMQKRGTPINRIPIMAKQILDLYMLYKL 255 Query: 279 VTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMKYLYPYECEKRGLSNPNEL 338 VTEKGGLVE+INKK+WREITKGLNLPTSITSAAFTLRTQYMKYLY YECEK+ LS+P EL Sbjct: 256 VTEKGGLVEIINKKIWREITKGLNLPTSITSAAFTLRTQYMKYLYAYECEKKALSSPAEL 315 Query: 339 QAAIDSNRREGRRQSFGGSLFAYSP--------GGAHGMLSSPKL--PVSSLGLAASTNG 388 QAAID NRREGRR S+ SLF YSP GA +LS PK+ P+ LG ++ TN Sbjct: 316 QAAIDGNRREGRRPSYSSSLFGYSPAAATAAAAAGAPALLSPPKIRFPILGLGSSSGTNT 375 Query: 389 SS--ITPAPKIKKEEDSAI-PITVPGRLPVSLAGHPVVAAQAAAVQAAAAQAAVAAQAAA 445 SS I+PA ++K + + + + VP RL AV A + AA Sbjct: 376 SSPRISPATTLRKGDGAPVTTVPVPNRL---------------AVPVTLASQQAGTRTAA 420 Query: 446 LEQLREKLESAEPPEKKMALVADEQQRLMQRALQQNFLAMAAQLPMSIRINSQASESRQD 505 LEQLRE+LES EP EKK + +++E+QRL+Q+A Q+NF +MA QLPM IRIN + + Sbjct: 421 LEQLRERLESGEPAEKKASRLSEEEQRLVQQAFQRNFFSMARQLPMKIRINGREDRAEAS 480 Query: 506 -SAVNLTGTNGSNSISMSVEINGIMYTGVLFAQPPAP--TPTSAPNKGGGGGGGSSSN 560 +A+NLT T+ SI+MSV+I+G Y GVLFAQ P SAP G SSS+ Sbjct: 481 AAALNLT-TSSIGSINMSVDIDGTTYAGVLFAQKPVVHLITGSAPQSLGSSASSSSSS 537 >gi|62865637 AT rich interactive domain 3C (BRIGHT- like) [Homo sapiens] Length = 412 Score = 296 bits (757), Expect = 5e-80 Identities = 204/443 (46%), Positives = 249/443 (56%), Gaps = 106/443 (23%) Query: 133 EEDLGEDEEEEEEDYEDEEEEEDEEGLGPPGPASLGTTALFPRKAQPPQAFRGDGVPRVL 192 E LG EEEED E++EE+ +E Sbjct: 42 EGALGNVGAEEEEDAEEDEEKREE------------------------------------ 65 Query: 193 GGQERPGPGPAHPGGAAHVAPQLQPPD--HGDWTYEEQFKQLYELDGDPKRKEFLDDLFS 250 G E + PG +P QPP +WTYEEQFKQLYELD DPKRKEFLDDLFS Sbjct: 66 AGAEEEAAEESRPGAQGPSSPSSQPPGLHPHEWTYEEQFKQLYELDADPKRKEFLDDLFS 125 Query: 251 FMQKRGTPVNRIPIMAKQVLDLFMLYVLVTEKGGLVEVINKKLWREITKGLNLPTSITSA 310 FMQKRGTPVNR+PIMAKQVLDL+ L+ LVT KGGLVEVIN+K+WRE+T+GL+LPT+ITSA Sbjct: 126 FMQKRGTPVNRVPIMAKQVLDLYALFRLVTAKGGLVEVINRKVWREVTRGLSLPTTITSA 185 Query: 311 AFTLRTQYMKYLYPYECEKRGLSNPNELQAAIDSNRREGRRQSFGGS-LFAYS---PGGA 366 AFTLRTQYMKYLYPYECE R LS+P ELQAAIDSNRREGRRQ++ + LF + P GA Sbjct: 186 AFTLRTQYMKYLYPYECETRALSSPGELQAAIDSNRREGRRQAYTATPLFGLAGPPPRGA 245 Query: 367 H----GMLSSPKLPVSSLGLA-ASTNG------SSITPAPKIKKEEDSAIPITVPGRLPV 415 G +P SS G A ST+G + ++P+P IKKEE S IP LPV Sbjct: 246 QDPALGPGPAPPATQSSPGPAQGSTSGLPAHACAQLSPSP-IKKEE-SGIPNPCLA-LPV 302 Query: 416 SLAGHPVVAAQAAAVQAAAAQAAVAAQAAALEQLREKLESAEPPEKKMALVADEQQRLMQ 475 LA P REKL EPPEK+ L+ + Sbjct: 303 GLALGPT---------------------------REKLAPEEPPEKRAVLMGPMDP--PR 333 Query: 476 RALQQNFLAMAAQLPMSIRINSQASESRQDSAVNLTGTNGSNSISMSVEINGIMYTGVLF 535 + +FL ++P+ E R D +NL G +G +SI+M++EING++YTGVLF Sbjct: 334 PCMPPSFLP-RGKVPL--------REERLDGPLNLAG-SGISSINMALEINGVVYTGVLF 383 Query: 536 A--QP---------PAPTPTSAP 547 A QP PAP P++ P Sbjct: 384 ARRQPVPASQGPTNPAPPPSTGP 406 >gi|40068466 AT rich interactive domain 1B (SWI1-like) isoform 1 [Homo sapiens] Length = 2231 Score = 111 bits (277), Expect = 2e-24 Identities = 101/362 (27%), Positives = 160/362 (44%), Gaps = 49/362 (13%) Query: 36 PGRARAAPDEDREPESARMQRAQMAALAAMRAAA--AGLGHPASPGGSEDG--------- 84 PG ++ P ++AQ AA A M+AAA A + PG ++ G Sbjct: 850 PGMSQQGGPGMGPPMPTVNRKAQEAAAAVMQAAANSAQSRQGSFPGMNQSGLMASSSPYS 909 Query: 85 -PPGSEEEDAAREGTPGS--PGRGREGPGEEHFEDMASDEDMKPKW--EEEEMEEDLGED 139 P + + P S P DM S + K + + EE + Sbjct: 910 QPMNNSSSLMNTQAPPYSMAPAMVNSSAASVGLADMMSPGESKLPLPLKADGKEEGTPQP 969 Query: 140 EEEEEEDYEDEEEEEDEEGLGPPGPASLGTTALFPRKAQPPQAFRGDGVPRVLGGQERPG 199 E + ++ Y + + PP P +L + + +F GD + Sbjct: 970 ESKSKDSYSSQGISQ------PPTPGNLPVPSPMSPSSASISSFHGDESDSI------SS 1017 Query: 200 PG-PAHPGGAAHVAPQLQPPDHGDWTYEEQFKQLYELDGDPKRKEFLDDLFSFMQKRGTP 258 PG P P P T E+ ++YEL +P+RK ++D +FM++RG+P Sbjct: 1018 PGWPKTPSS---------PKSSSSTTTGEKITKVYELGNEPERKLWVDRYLTFMEERGSP 1068 Query: 259 VNRIPIMAKQVLDLFMLYVLVTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQY 318 V+ +P + K+ LDLF LYV V E GGL +V K WRE+ LN+ TS +SAA +L+ QY Sbjct: 1069 VSSLPAVGKKPLDLFRLYVCVKEIGGLAQVNKNKKWRELATNLNVGTS-SSAASSLKKQY 1127 Query: 319 MKYLYPYECE-KRGLSNPNELQAAIDSNRREGRRQSFGGSLFAYSPGGAHGMLSSPKLPV 377 ++YL+ +EC+ +RG P E+ + D+ ++ L SP + G L P+ P Sbjct: 1128 IQYLFAFECKIERGEEPPPEVFSTGDTKKQP--------KLQPPSPANS-GSLQGPQTPQ 1178 Query: 378 SS 379 S+ Sbjct: 1179 ST 1180 Score = 40.0 bits (92), Expect = 0.006 Identities = 18/51 (35%), Positives = 23/51 (45%) Query: 538 PPAPTPTSAPNKGGGGGGGSSSNAGGRGGNTGTSGGQAGPAGLSTPSTSTS 588 P P + GGGGGGG S GG GG G G AG + + + + Sbjct: 241 PGYSRPGAGGGGGGGGGGGGGSGGGGGGGGAGAGGAGAGAVAAAAAAAAAA 291 Score = 37.0 bits (84), Expect = 0.051 Identities = 26/93 (27%), Positives = 41/93 (44%), Gaps = 8/93 (8%) Query: 97 GTPGSPGRGREGPGEEHFEDMASDEDMKPKWEEEEMEEDLGEDEEEEEEDYEDEEEEEDE 156 G P ++ + +A D +EEE E + +DEE+EE++ ED E+ E + Sbjct: 1686 GDPSQKALDHNAARKDDSQSLADDSG-----KEEEDAECIDDDEEDEEDEEEDSEKTESD 1740 Query: 157 EGLGPPGPASLGTTALFPRKAQPPQAFRGDGVP 189 E A A K +P QA + D +P Sbjct: 1741 E---KSSIALTAPDAAADPKEKPKQASKFDKLP 1770 Score = 33.9 bits (76), Expect = 0.43 Identities = 27/98 (27%), Positives = 42/98 (42%), Gaps = 1/98 (1%) Query: 12 QRQQRARQELEARQQLPPDPPAAPPGRARAAPDEDREPESARMQRAQMAALAAMRAAAAG 71 Q+QQ+ +Q+ + +QQ P + G AP + E + A+ +A A +A G Sbjct: 59 QQQQQQQQQQQQQQQHPISNNNSLGGAGGGAPQPGPDMEQPQHGGAKDSA-AGGQADPPG 117 Query: 72 LGHPASPGGSEDGPPGSEEEDAAREGTPGSPGRGREGP 109 + PG +D PP E R PG G + P Sbjct: 118 PPLLSKPGDEDDAPPKMGEPAGGRYEHPGLGALGTQQP 155 Score = 31.2 bits (69), Expect = 2.8 Identities = 27/94 (28%), Positives = 34/94 (36%), Gaps = 6/94 (6%) Query: 17 ARQELEARQQLPPDPPA-APPGRARAAPDEDREPESARMQRAQMAALAAMRAAAAGLGHP 75 A+ Q PP PP + PG AP + EP R + + AL + A G Sbjct: 104 AKDSAAGGQADPPGPPLLSKPGDEDDAPPKMGEPAGGRYEHPGLGALGTQQPPVAVPG-- 161 Query: 76 ASPGGSEDGPPGSEEEDAAREGTPGSPGRGREGP 109 GG P + G PG GR GP Sbjct: 162 --GGGGPAAVPEFNNYYGSAAPASGGPG-GRAGP 192 Score = 29.6 bits (65), Expect = 8.2 Identities = 12/30 (40%), Positives = 15/30 (50%) Query: 550 GGGGGGGSSSNAGGRGGNTGTSGGQAGPAG 579 GGGGGGG+ + G G + A AG Sbjct: 264 GGGGGGGAGAGGAGAGAVAAAAAAAAAAAG 293 Score = 29.6 bits (65), Expect = 8.2 Identities = 18/49 (36%), Positives = 20/49 (40%), Gaps = 15/49 (30%) Query: 550 GGGGGGGSSSNAG---------------GRGGNTGTSGGQAGPAGLSTP 583 GGGGGG + AG G GG G G AG LS+P Sbjct: 265 GGGGGGAGAGGAGAGAVAAAAAAAAAAAGGGGGGGYGGSSAGYGVLSSP 313 >gi|40068464 AT rich interactive domain 1B (SWI1-like) isoform 2 [Homo sapiens] Length = 2191 Score = 104 bits (260), Expect = 2e-22 Identities = 68/197 (34%), Positives = 107/197 (54%), Gaps = 14/197 (7%) Query: 187 GVPRVLGGQERPGPGPAHPGGAAHVAPQLQPPDH---GDWTYEEQFKQLYELDGDPKRKE 243 G+ ++ E P P G PQ + T E+ ++YEL +P+RK Sbjct: 954 GLADMMSPGESKLPLPLKADGKEEGTPQPESKSKKSSSSTTTGEKITKVYELGNEPERKL 1013 Query: 244 FLDDLFSFMQKRGTPVNRIPIMAKQVLDLFMLYVLVTEKGGLVEVINKKLWREITKGLNL 303 ++D +FM++RG+PV+ +P + K+ LDLF LYV V E GGL +V K WRE+ LN+ Sbjct: 1014 WVDRYLTFMEERGSPVSSLPAVGKKPLDLFRLYVCVKEIGGLAQVNKNKKWRELATNLNV 1073 Query: 304 PTSITSAAFTLRTQYMKYLYPYECE-KRGLSNPNELQAAIDSNRREGRRQSFGGSLFAYS 362 TS +SAA +L+ QY++YL+ +EC+ +RG P E+ + D+ ++ L S Sbjct: 1074 GTS-SSAASSLKKQYIQYLFAFECKIERGEEPPPEVFSTGDTKKQP--------KLQPPS 1124 Query: 363 PGGAHGMLSSPKLPVSS 379 P + G L P+ P S+ Sbjct: 1125 PANS-GSLQGPQTPQST 1140 Score = 40.0 bits (92), Expect = 0.006 Identities = 18/51 (35%), Positives = 23/51 (45%) Query: 538 PPAPTPTSAPNKGGGGGGGSSSNAGGRGGNTGTSGGQAGPAGLSTPSTSTS 588 P P + GGGGGGG S GG GG G G AG + + + + Sbjct: 241 PGYSRPGAGGGGGGGGGGGGGSGGGGGGGGAGAGGAGAGAVAAAAAAAAAA 291 Score = 37.0 bits (84), Expect = 0.051 Identities = 26/93 (27%), Positives = 41/93 (44%), Gaps = 8/93 (8%) Query: 97 GTPGSPGRGREGPGEEHFEDMASDEDMKPKWEEEEMEEDLGEDEEEEEEDYEDEEEEEDE 156 G P ++ + +A D +EEE E + +DEE+EE++ ED E+ E + Sbjct: 1646 GDPSQKALDHNAARKDDSQSLADDSG-----KEEEDAECIDDDEEDEEDEEEDSEKTESD 1700 Query: 157 EGLGPPGPASLGTTALFPRKAQPPQAFRGDGVP 189 E A A K +P QA + D +P Sbjct: 1701 E---KSSIALTAPDAAADPKEKPKQASKFDKLP 1730 Score = 33.9 bits (76), Expect = 0.43 Identities = 27/98 (27%), Positives = 42/98 (42%), Gaps = 1/98 (1%) Query: 12 QRQQRARQELEARQQLPPDPPAAPPGRARAAPDEDREPESARMQRAQMAALAAMRAAAAG 71 Q+QQ+ +Q+ + +QQ P + G AP + E + A+ +A A +A G Sbjct: 59 QQQQQQQQQQQQQQQHPISNNNSLGGAGGGAPQPGPDMEQPQHGGAKDSA-AGGQADPPG 117 Query: 72 LGHPASPGGSEDGPPGSEEEDAAREGTPGSPGRGREGP 109 + PG +D PP E R PG G + P Sbjct: 118 PPLLSKPGDEDDAPPKMGEPAGGRYEHPGLGALGTQQP 155 Score = 31.2 bits (69), Expect = 2.8 Identities = 27/94 (28%), Positives = 34/94 (36%), Gaps = 6/94 (6%) Query: 17 ARQELEARQQLPPDPPA-APPGRARAAPDEDREPESARMQRAQMAALAAMRAAAAGLGHP 75 A+ Q PP PP + PG AP + EP R + + AL + A G Sbjct: 104 AKDSAAGGQADPPGPPLLSKPGDEDDAPPKMGEPAGGRYEHPGLGALGTQQPPVAVPG-- 161 Query: 76 ASPGGSEDGPPGSEEEDAAREGTPGSPGRGREGP 109 GG P + G PG GR GP Sbjct: 162 --GGGGPAAVPEFNNYYGSAAPASGGPG-GRAGP 192 Score = 29.6 bits (65), Expect = 8.2 Identities = 12/30 (40%), Positives = 15/30 (50%) Query: 550 GGGGGGGSSSNAGGRGGNTGTSGGQAGPAG 579 GGGGGGG+ + G G + A AG Sbjct: 264 GGGGGGGAGAGGAGAGAVAAAAAAAAAAAG 293 Score = 29.6 bits (65), Expect = 8.2 Identities = 18/49 (36%), Positives = 20/49 (40%), Gaps = 15/49 (30%) Query: 550 GGGGGGGSSSNAG---------------GRGGNTGTSGGQAGPAGLSTP 583 GGGGGG + AG G GG G G AG LS+P Sbjct: 265 GGGGGGAGAGGAGAGAVAAAAAAAAAAAGGGGGGGYGGSSAGYGVLSSP 313 >gi|40068462 AT rich interactive domain 1B (SWI1-like) isoform 3 [Homo sapiens] Length = 2178 Score = 104 bits (260), Expect = 2e-22 Identities = 68/197 (34%), Positives = 107/197 (54%), Gaps = 14/197 (7%) Query: 187 GVPRVLGGQERPGPGPAHPGGAAHVAPQLQPPDH---GDWTYEEQFKQLYELDGDPKRKE 243 G+ ++ E P P G PQ + T E+ ++YEL +P+RK Sbjct: 941 GLADMMSPGESKLPLPLKADGKEEGTPQPESKSKKSSSSTTTGEKITKVYELGNEPERKL 1000 Query: 244 FLDDLFSFMQKRGTPVNRIPIMAKQVLDLFMLYVLVTEKGGLVEVINKKLWREITKGLNL 303 ++D +FM++RG+PV+ +P + K+ LDLF LYV V E GGL +V K WRE+ LN+ Sbjct: 1001 WVDRYLTFMEERGSPVSSLPAVGKKPLDLFRLYVCVKEIGGLAQVNKNKKWRELATNLNV 1060 Query: 304 PTSITSAAFTLRTQYMKYLYPYECE-KRGLSNPNELQAAIDSNRREGRRQSFGGSLFAYS 362 TS +SAA +L+ QY++YL+ +EC+ +RG P E+ + D+ ++ L S Sbjct: 1061 GTS-SSAASSLKKQYIQYLFAFECKIERGEEPPPEVFSTGDTKKQP--------KLQPPS 1111 Query: 363 PGGAHGMLSSPKLPVSS 379 P + G L P+ P S+ Sbjct: 1112 PANS-GSLQGPQTPQST 1127 Score = 40.0 bits (92), Expect = 0.006 Identities = 18/51 (35%), Positives = 23/51 (45%) Query: 538 PPAPTPTSAPNKGGGGGGGSSSNAGGRGGNTGTSGGQAGPAGLSTPSTSTS 588 P P + GGGGGGG S GG GG G G AG + + + + Sbjct: 241 PGYSRPGAGGGGGGGGGGGGGSGGGGGGGGAGAGGAGAGAVAAAAAAAAAA 291 Score = 37.0 bits (84), Expect = 0.051 Identities = 26/93 (27%), Positives = 41/93 (44%), Gaps = 8/93 (8%) Query: 97 GTPGSPGRGREGPGEEHFEDMASDEDMKPKWEEEEMEEDLGEDEEEEEEDYEDEEEEEDE 156 G P ++ + +A D +EEE E + +DEE+EE++ ED E+ E + Sbjct: 1633 GDPSQKALDHNAARKDDSQSLADDSG-----KEEEDAECIDDDEEDEEDEEEDSEKTESD 1687 Query: 157 EGLGPPGPASLGTTALFPRKAQPPQAFRGDGVP 189 E A A K +P QA + D +P Sbjct: 1688 E---KSSIALTAPDAAADPKEKPKQASKFDKLP 1717 Score = 33.9 bits (76), Expect = 0.43 Identities = 27/98 (27%), Positives = 42/98 (42%), Gaps = 1/98 (1%) Query: 12 QRQQRARQELEARQQLPPDPPAAPPGRARAAPDEDREPESARMQRAQMAALAAMRAAAAG 71 Q+QQ+ +Q+ + +QQ P + G AP + E + A+ +A A +A G Sbjct: 59 QQQQQQQQQQQQQQQHPISNNNSLGGAGGGAPQPGPDMEQPQHGGAKDSA-AGGQADPPG 117 Query: 72 LGHPASPGGSEDGPPGSEEEDAAREGTPGSPGRGREGP 109 + PG +D PP E R PG G + P Sbjct: 118 PPLLSKPGDEDDAPPKMGEPAGGRYEHPGLGALGTQQP 155 Score = 31.2 bits (69), Expect = 2.8 Identities = 27/94 (28%), Positives = 34/94 (36%), Gaps = 6/94 (6%) Query: 17 ARQELEARQQLPPDPPA-APPGRARAAPDEDREPESARMQRAQMAALAAMRAAAAGLGHP 75 A+ Q PP PP + PG AP + EP R + + AL + A G Sbjct: 104 AKDSAAGGQADPPGPPLLSKPGDEDDAPPKMGEPAGGRYEHPGLGALGTQQPPVAVPG-- 161 Query: 76 ASPGGSEDGPPGSEEEDAAREGTPGSPGRGREGP 109 GG P + G PG GR GP Sbjct: 162 --GGGGPAAVPEFNNYYGSAAPASGGPG-GRAGP 192 Score = 29.6 bits (65), Expect = 8.2 Identities = 12/30 (40%), Positives = 15/30 (50%) Query: 550 GGGGGGGSSSNAGGRGGNTGTSGGQAGPAG 579 GGGGGGG+ + G G + A AG Sbjct: 264 GGGGGGGAGAGGAGAGAVAAAAAAAAAAAG 293 Score = 29.6 bits (65), Expect = 8.2 Identities = 18/49 (36%), Positives = 20/49 (40%), Gaps = 15/49 (30%) Query: 550 GGGGGGGSSSNAG---------------GRGGNTGTSGGQAGPAGLSTP 583 GGGGGG + AG G GG G G AG LS+P Sbjct: 265 GGGGGGAGAGGAGAGAVAAAAAAAAAAAGGGGGGGYGGSSAGYGVLSSP 313 >gi|21264565 AT rich interactive domain 1A isoform a [Homo sapiens] Length = 2285 Score = 102 bits (254), Expect = 1e-21 Identities = 66/194 (34%), Positives = 104/194 (53%), Gaps = 21/194 (10%) Query: 224 TYEEQFKQLYELDGDPKRKEFLDDLFSFMQKRGTPVNRIPIMAKQVLDLFMLYVLVTEKG 283 T E+ +LYEL G+P+RK ++D +F +++ + +P + ++ LDL+ LYV V E G Sbjct: 1003 TTNEKITKLYELGGEPERKMWVDRYLAFTEEKAMGMTNLPAVGRKPLDLYRLYVSVKEIG 1062 Query: 284 GLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMKYLYPYECE-KRGLSNPNELQAAI 342 GL +V K WRE+ LN+ TS +SAA +L+ QY++ LY +EC+ +RG P ++ AA Sbjct: 1063 GLTQVNKNKKWRELATNLNVGTS-SSAASSLKKQYIQCLYAFECKIERGEDPPPDIFAAA 1121 Query: 343 DSNRREGRRQSFGGSLFAYSPGGAHGMLSSPKLPVSSLG-----------LAASTNGSSI 391 DS + + + Q SP G+ G + P+ P S+ AST S I Sbjct: 1122 DSKKSQPKIQ-------PPSPAGS-GSMQGPQTPQSTSSSMAEGGDLKPPTPASTPHSQI 1173 Query: 392 TPAPKIKKEEDSAI 405 P P + + I Sbjct: 1174 PPLPGMSRSNSVGI 1187 Score = 38.1 bits (87), Expect = 0.023 Identities = 45/197 (22%), Positives = 63/197 (31%), Gaps = 10/197 (5%) Query: 30 DPPAAPPGRARAAPDEDREPESARMQRAQMAALAAMRAAAAGLGHPASPGGSEDGPPGSE 89 +PP PP + A + RE A A M+AAA + G + P G E Sbjct: 15 NPPPPPPSELKKAEQQQREEAGGEAAAAAAAERGEMKAAAGQESEGPAVGPPQ--PLGKE 72 Query: 90 EEDAAREGTPGSPGRGREGPGEEHFEDMA-SDEDMKPKWEEEEMEEDLGEDEEEEEEDYE 148 +D A G G G G D+ S+ + P+ + +L E Sbjct: 73 LQDGAESNGGGGGGGAGSGGGPGAEPDLKNSNGNAGPR---PALNNNLTEPPGGGGGGSS 129 Query: 149 DEEEEEDEEGLGPPGPASLGTTALFPRKAQPPQAFRGDGVPRVLGGQERPGPGPAHPGGA 208 D P + G + R A + GGQ+ PG GG Sbjct: 130 DGVGAPPHSAAAALPPPAYGFGQPYGRSPSAVAAAAAAVFHQQHGGQQSPGLAALQSGGG 189 Query: 209 A----HVAPQLQPPDHG 221 + PQ DHG Sbjct: 190 GGLEPYAGPQQNSHDHG 206 Score = 32.7 bits (73), Expect = 0.97 Identities = 19/45 (42%), Positives = 22/45 (48%), Gaps = 5/45 (11%) Query: 538 PPAPT----PTSAPNKGGGGGGGSSSNAG-GRGGNTGTSGGQAGP 577 PP P A + GGGGGGG+ S G G + S G AGP Sbjct: 65 PPQPLGKELQDGAESNGGGGGGGAGSGGGPGAEPDLKNSNGNAGP 109 Score = 30.0 bits (66), Expect = 6.3 Identities = 27/100 (27%), Positives = 38/100 (38%), Gaps = 12/100 (12%) Query: 24 RQQLPPDPPA---------APPGRARAAPDEDREPESARMQRAQMAALAAMRAAAAGLGH 74 R PP PA P A AA P S+ + ++ A R A G G Sbjct: 219 RSAYPPPAPAYALSSPRGGTPGSGAAAAAGSKPPPSSSASASSSSSSFAQQRFGAMGGGG 278 Query: 75 PASPGGSEDGPPGSEEEDAAREGTPGSPGRGREG-PGEEH 113 P++ GG P + + T S RG +G PG ++ Sbjct: 279 PSAAGGGTPQPTATPTLNQLL--TSPSSARGYQGYPGGDY 316 >gi|21264575 AT rich interactive domain 1A isoform b [Homo sapiens] Length = 2068 Score = 102 bits (254), Expect = 1e-21 Identities = 66/194 (34%), Positives = 104/194 (53%), Gaps = 21/194 (10%) Query: 224 TYEEQFKQLYELDGDPKRKEFLDDLFSFMQKRGTPVNRIPIMAKQVLDLFMLYVLVTEKG 283 T E+ +LYEL G+P+RK ++D +F +++ + +P + ++ LDL+ LYV V E G Sbjct: 1003 TTNEKITKLYELGGEPERKMWVDRYLAFTEEKAMGMTNLPAVGRKPLDLYRLYVSVKEIG 1062 Query: 284 GLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMKYLYPYECE-KRGLSNPNELQAAI 342 GL +V K WRE+ LN+ TS +SAA +L+ QY++ LY +EC+ +RG P ++ AA Sbjct: 1063 GLTQVNKNKKWRELATNLNVGTS-SSAASSLKKQYIQCLYAFECKIERGEDPPPDIFAAA 1121 Query: 343 DSNRREGRRQSFGGSLFAYSPGGAHGMLSSPKLPVSSLG-----------LAASTNGSSI 391 DS + + + Q SP G+ G + P+ P S+ AST S I Sbjct: 1122 DSKKSQPKIQ-------PPSPAGS-GSMQGPQTPQSTSSSMAEGGDLKPPTPASTPHSQI 1173 Query: 392 TPAPKIKKEEDSAI 405 P P + + I Sbjct: 1174 PPLPGMSRSNSVGI 1187 Score = 38.1 bits (87), Expect = 0.023 Identities = 45/197 (22%), Positives = 63/197 (31%), Gaps = 10/197 (5%) Query: 30 DPPAAPPGRARAAPDEDREPESARMQRAQMAALAAMRAAAAGLGHPASPGGSEDGPPGSE 89 +PP PP + A + RE A A M+AAA + G + P G E Sbjct: 15 NPPPPPPSELKKAEQQQREEAGGEAAAAAAAERGEMKAAAGQESEGPAVGPPQ--PLGKE 72 Query: 90 EEDAAREGTPGSPGRGREGPGEEHFEDMA-SDEDMKPKWEEEEMEEDLGEDEEEEEEDYE 148 +D A G G G G D+ S+ + P+ + +L E Sbjct: 73 LQDGAESNGGGGGGGAGSGGGPGAEPDLKNSNGNAGPR---PALNNNLTEPPGGGGGGSS 129 Query: 149 DEEEEEDEEGLGPPGPASLGTTALFPRKAQPPQAFRGDGVPRVLGGQERPGPGPAHPGGA 208 D P + G + R A + GGQ+ PG GG Sbjct: 130 DGVGAPPHSAAAALPPPAYGFGQPYGRSPSAVAAAAAAVFHQQHGGQQSPGLAALQSGGG 189 Query: 209 A----HVAPQLQPPDHG 221 + PQ DHG Sbjct: 190 GGLEPYAGPQQNSHDHG 206 Score = 32.7 bits (73), Expect = 0.97 Identities = 19/45 (42%), Positives = 22/45 (48%), Gaps = 5/45 (11%) Query: 538 PPAPT----PTSAPNKGGGGGGGSSSNAG-GRGGNTGTSGGQAGP 577 PP P A + GGGGGGG+ S G G + S G AGP Sbjct: 65 PPQPLGKELQDGAESNGGGGGGGAGSGGGPGAEPDLKNSNGNAGP 109 Score = 30.0 bits (66), Expect = 6.3 Identities = 27/100 (27%), Positives = 38/100 (38%), Gaps = 12/100 (12%) Query: 24 RQQLPPDPPA---------APPGRARAAPDEDREPESARMQRAQMAALAAMRAAAAGLGH 74 R PP PA P A AA P S+ + ++ A R A G G Sbjct: 219 RSAYPPPAPAYALSSPRGGTPGSGAAAAAGSKPPPSSSASASSSSSSFAQQRFGAMGGGG 278 Query: 75 PASPGGSEDGPPGSEEEDAAREGTPGSPGRGREG-PGEEH 113 P++ GG P + + T S RG +G PG ++ Sbjct: 279 PSAAGGGTPQPTATPTLNQLL--TSPSSARGYQGYPGGDY 316 >gi|115334679 retinoblastoma-binding protein 1 isoform III [Homo sapiens] Length = 1188 Score = 75.5 bits (184), Expect = 1e-13 Identities = 38/115 (33%), Positives = 70/115 (60%), Gaps = 5/115 (4%) Query: 217 PPDHGDWTYEEQFK----QLYELDGDPKRKE-FLDDLFSFMQKRGTPVNRIPIMAKQVLD 271 P + D E++ K ++ E + DP+ ++ FL L+ FM+ RGTP+N+ P++ + L+ Sbjct: 283 PAEENDEEKEKEAKKTEEEVPEEELDPEERDNFLQQLYKFMEDRGTPINKPPVLGYKDLN 342 Query: 272 LFMLYVLVTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMKYLYPYE 326 LF L+ LV +GG + + +W++I L +P ++A++ ++T Y KYLY +E Sbjct: 343 LFKLFRLVYHQGGCDNIDSGAVWKQIYMDLGIPILNSAASYNVKTAYRKYLYGFE 397 Score = 32.0 bits (71), Expect = 1.6 Identities = 18/67 (26%), Positives = 31/67 (46%) Query: 82 EDGPPGSEEEDAAREGTPGSPGRGREGPGEEHFEDMASDEDMKPKWEEEEMEEDLGEDEE 141 +D ++E+ G +P + + ++ D SDE+ + E EE E + E Sbjct: 505 DDYETAEKKENELLLGRKNTPKQKEKKIKKQEDSDKDSDEEEEKSQEREETESKCDSEGE 564 Query: 142 EEEEDYE 148 E+EED E Sbjct: 565 EDEEDME 571 Score = 30.8 bits (68), Expect = 3.7 Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 11/48 (22%) Query: 125 PKWEEEEM--EEDLGEDEEEEEEDYEDEEE---------EEDEEGLGP 161 PK +E+++ +ED +D +EEEE ++ EE EEDEE + P Sbjct: 525 PKQKEKKIKKQEDSDKDSDEEEEKSQEREETESKCDSEGEEDEEDMEP 572 Score = 30.0 bits (66), Expect = 6.3 Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 1/53 (1%) Query: 105 GREGPGEEHFEDMASDEDMKPKWEEEEMEEDLGEDEEEEEEDYEDEEEEEDEE 157 GR+ ++ + + ED +EEE E+ +E E + D E EE+EED E Sbjct: 520 GRKNTPKQKEKKIKKQEDSDKDSDEEE-EKSQEREETESKCDSEGEEDEEDME 571 >gi|115334673 retinoblastoma-binding protein 1 isoform II [Homo sapiens] Length = 1203 Score = 75.5 bits (184), Expect = 1e-13 Identities = 38/115 (33%), Positives = 70/115 (60%), Gaps = 5/115 (4%) Query: 217 PPDHGDWTYEEQFK----QLYELDGDPKRKE-FLDDLFSFMQKRGTPVNRIPIMAKQVLD 271 P + D E++ K ++ E + DP+ ++ FL L+ FM+ RGTP+N+ P++ + L+ Sbjct: 283 PAEENDEEKEKEAKKTEEEVPEEELDPEERDNFLQQLYKFMEDRGTPINKPPVLGYKDLN 342 Query: 272 LFMLYVLVTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMKYLYPYE 326 LF L+ LV +GG + + +W++I L +P ++A++ ++T Y KYLY +E Sbjct: 343 LFKLFRLVYHQGGCDNIDSGAVWKQIYMDLGIPILNSAASYNVKTAYRKYLYGFE 397 Score = 32.0 bits (71), Expect = 1.6 Identities = 18/67 (26%), Positives = 31/67 (46%) Query: 82 EDGPPGSEEEDAAREGTPGSPGRGREGPGEEHFEDMASDEDMKPKWEEEEMEEDLGEDEE 141 +D ++E+ G +P + + ++ D SDE+ + E EE E + E Sbjct: 505 DDYETAEKKENELLLGRKNTPKQKEKKIKKQEDSDKDSDEEEEKSQEREETESKCDSEGE 564 Query: 142 EEEEDYE 148 E+EED E Sbjct: 565 EDEEDME 571 Score = 30.8 bits (68), Expect = 3.7 Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 11/48 (22%) Query: 125 PKWEEEEM--EEDLGEDEEEEEEDYEDEEE---------EEDEEGLGP 161 PK +E+++ +ED +D +EEEE ++ EE EEDEE + P Sbjct: 525 PKQKEKKIKKQEDSDKDSDEEEEKSQEREETESKCDSEGEEDEEDMEP 572 Score = 30.0 bits (66), Expect = 6.3 Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 1/53 (1%) Query: 105 GREGPGEEHFEDMASDEDMKPKWEEEEMEEDLGEDEEEEEEDYEDEEEEEDEE 157 GR+ ++ + + ED +EEE E+ +E E + D E EE+EED E Sbjct: 520 GRKNTPKQKEKKIKKQEDSDKDSDEEE-EKSQEREETESKCDSEGEEDEEDME 571 >gi|115334677 retinoblastoma-binding protein 1 isoform I [Homo sapiens] Length = 1257 Score = 75.5 bits (184), Expect = 1e-13 Identities = 38/115 (33%), Positives = 70/115 (60%), Gaps = 5/115 (4%) Query: 217 PPDHGDWTYEEQFK----QLYELDGDPKRKE-FLDDLFSFMQKRGTPVNRIPIMAKQVLD 271 P + D E++ K ++ E + DP+ ++ FL L+ FM+ RGTP+N+ P++ + L+ Sbjct: 283 PAEENDEEKEKEAKKTEEEVPEEELDPEERDNFLQQLYKFMEDRGTPINKPPVLGYKDLN 342 Query: 272 LFMLYVLVTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMKYLYPYE 326 LF L+ LV +GG + + +W++I L +P ++A++ ++T Y KYLY +E Sbjct: 343 LFKLFRLVYHQGGCDNIDSGAVWKQIYMDLGIPILNSAASYNVKTAYRKYLYGFE 397 Score = 32.0 bits (71), Expect = 1.6 Identities = 18/67 (26%), Positives = 31/67 (46%) Query: 82 EDGPPGSEEEDAAREGTPGSPGRGREGPGEEHFEDMASDEDMKPKWEEEEMEEDLGEDEE 141 +D ++E+ G +P + + ++ D SDE+ + E EE E + E Sbjct: 505 DDYETAEKKENELLLGRKNTPKQKEKKIKKQEDSDKDSDEEEEKSQEREETESKCDSEGE 564 Query: 142 EEEEDYE 148 E+EED E Sbjct: 565 EDEEDME 571 Score = 30.8 bits (68), Expect = 3.7 Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 11/48 (22%) Query: 125 PKWEEEEM--EEDLGEDEEEEEEDYEDEEE---------EEDEEGLGP 161 PK +E+++ +ED +D +EEEE ++ EE EEDEE + P Sbjct: 525 PKQKEKKIKKQEDSDKDSDEEEEKSQEREETESKCDSEGEEDEEDMEP 572 Score = 30.0 bits (66), Expect = 6.3 Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 1/53 (1%) Query: 105 GREGPGEEHFEDMASDEDMKPKWEEEEMEEDLGEDEEEEEEDYEDEEEEEDEE 157 GR+ ++ + + ED +EEE E+ +E E + D E EE+EED E Sbjct: 520 GRKNTPKQKEKKIKKQEDSDKDSDEEE-EKSQEREETESKCDSEGEEDEEDME 571 >gi|56549668 AT rich interactive domain 2 (ARID, RFX-like) [Homo sapiens] Length = 1835 Score = 73.9 bits (180), Expect = 4e-13 Identities = 39/91 (42%), Positives = 52/91 (57%), Gaps = 2/91 (2%) Query: 238 DPKRK--EFLDDLFSFMQKRGTPVNRIPIMAKQVLDLFMLYVLVTEKGGLVEVINKKLWR 295 D +RK FLD+L F RG+P +IP + + LDL LY VT GG +V K W Sbjct: 11 DERRKGLAFLDELRQFHHSRGSPFKKIPAVGGKELDLHGLYTRVTTLGGFAKVSEKNQWG 70 Query: 296 EITKGLNLPTSITSAAFTLRTQYMKYLYPYE 326 EI + N P S ++AAF L+ Y++YL YE Sbjct: 71 EIVEEFNFPRSCSNAAFALKQYYLRYLEKYE 101 >gi|22035679 AT rich interactive domain 4B isoform 2 [Homo sapiens] Length = 1226 Score = 72.0 bits (175), Expect = 1e-12 Identities = 30/87 (34%), Positives = 56/87 (64%) Query: 240 KRKEFLDDLFSFMQKRGTPVNRIPIMAKQVLDLFMLYVLVTEKGGLVEVINKKLWREITK 299 +R+ FL L+ FM+ RGTP+N+ P++ + L+LF L+ LV + GG + + +W+++ + Sbjct: 308 ERENFLQQLYKFMEDRGTPINKRPVLGYRNLNLFKLFRLVHKLGGFDNIESGAVWKQVYQ 367 Query: 300 GLNLPTSITSAAFTLRTQYMKYLYPYE 326 L +P ++A + ++ Y KYLY +E Sbjct: 368 DLGIPVLNSAAGYNVKCAYKKYLYGFE 394 Score = 33.5 bits (75), Expect = 0.57 Identities = 19/36 (52%), Positives = 22/36 (61%), Gaps = 3/36 (8%) Query: 121 EDMKPKWEEEEMEEDLGEDEEEEEEDYEDEEEEEDE 156 ED EEE EE ED+E+E+ED EEEEE E Sbjct: 271 EDSSSSEAEEEEEE---EDDEKEKEDNSSEEEEEIE 303 Score = 33.1 bits (74), Expect = 0.74 Identities = 13/29 (44%), Positives = 20/29 (68%) Query: 127 WEEEEMEEDLGEDEEEEEEDYEDEEEEED 155 W+ E E+ + EEEEE+ +DE+E+ED Sbjct: 265 WKTELKEDSSSSEAEEEEEEEDDEKEKED 293 Score = 31.6 bits (70), Expect = 2.2 Identities = 12/26 (46%), Positives = 20/26 (76%) Query: 131 EMEEDLGEDEEEEEEDYEDEEEEEDE 156 E++ED E EEEE+ ED+E+E+++ Sbjct: 268 ELKEDSSSSEAEEEEEEEDDEKEKED 293 Score = 30.4 bits (67), Expect = 4.8 Identities = 14/36 (38%), Positives = 23/36 (63%), Gaps = 2/36 (5%) Query: 122 DMKPKWEEEEMEEDLGEDEEEEEEDYEDEEEEEDEE 157 ++K E EE+ E+EE++E++ ED EE+EE Sbjct: 268 ELKEDSSSSEAEEE--EEEEDDEKEKEDNSSEEEEE 301 >gi|22035677 AT rich interactive domain 4B isoform 1 [Homo sapiens] Length = 1312 Score = 72.0 bits (175), Expect = 1e-12 Identities = 30/87 (34%), Positives = 56/87 (64%) Query: 240 KRKEFLDDLFSFMQKRGTPVNRIPIMAKQVLDLFMLYVLVTEKGGLVEVINKKLWREITK 299 +R+ FL L+ FM+ RGTP+N+ P++ + L+LF L+ LV + GG + + +W+++ + Sbjct: 308 ERENFLQQLYKFMEDRGTPINKRPVLGYRNLNLFKLFRLVHKLGGFDNIESGAVWKQVYQ 367 Query: 300 GLNLPTSITSAAFTLRTQYMKYLYPYE 326 L +P ++A + ++ Y KYLY +E Sbjct: 368 DLGIPVLNSAAGYNVKCAYKKYLYGFE 394 Score = 40.8 bits (94), Expect = 0.004 Identities = 19/46 (41%), Positives = 30/46 (65%) Query: 118 ASDEDMKPKWEEEEMEEDLGEDEEEEEEDYEDEEEEEDEEGLGPPG 163 + DE K + E++E E+ E+EEEEE++ +D+ EE+E PPG Sbjct: 527 SGDETNKEEDEDDEEAEEEEEEEEEEEDEDDDDNNEEEEFECYPPG 572 Score = 38.9 bits (89), Expect = 0.013 Identities = 16/39 (41%), Positives = 27/39 (69%) Query: 119 SDEDMKPKWEEEEMEEDLGEDEEEEEEDYEDEEEEEDEE 157 ++E+ +E EED ++E EEEE+ E+EEE+ED++ Sbjct: 520 AEEEKAKSGDETNKEEDEDDEEAEEEEEEEEEEEDEDDD 558 Score = 36.2 bits (82), Expect = 0.087 Identities = 19/40 (47%), Positives = 27/40 (67%), Gaps = 2/40 (5%) Query: 120 DEDMKPKWEEEEMEEDLGED--EEEEEEDYEDEEEEEDEE 157 DE + K E EE + G++ +EE+E+D E EEEEE+EE Sbjct: 511 DESLNIKVEAEEEKAKSGDETNKEEDEDDEEAEEEEEEEE 550 Score = 35.8 bits (81), Expect = 0.11 Identities = 16/40 (40%), Positives = 27/40 (67%) Query: 118 ASDEDMKPKWEEEEMEEDLGEDEEEEEEDYEDEEEEEDEE 157 A +E K E + E++ E+ EEEEE+ E+EE+E+D++ Sbjct: 520 AEEEKAKSGDETNKEEDEDDEEAEEEEEEEEEEEDEDDDD 559 Score = 35.4 bits (80), Expect = 0.15 Identities = 16/38 (42%), Positives = 25/38 (65%) Query: 111 EEHFEDMASDEDMKPKWEEEEMEEDLGEDEEEEEEDYE 148 E + E+ DE+ + + EEEE EED +D+ EEE++E Sbjct: 530 ETNKEEDEDDEEAEEEEEEEEEEEDEDDDDNNEEEEFE 567 Score = 33.5 bits (75), Expect = 0.57 Identities = 19/36 (52%), Positives = 22/36 (61%), Gaps = 3/36 (8%) Query: 121 EDMKPKWEEEEMEEDLGEDEEEEEEDYEDEEEEEDE 156 ED EEE EE ED+E+E+ED EEEEE E Sbjct: 271 EDSSSSEAEEEEEE---EDDEKEKEDNSSEEEEEIE 303 Score = 33.1 bits (74), Expect = 0.74 Identities = 13/29 (44%), Positives = 20/29 (68%) Query: 127 WEEEEMEEDLGEDEEEEEEDYEDEEEEED 155 W+ E E+ + EEEEE+ +DE+E+ED Sbjct: 265 WKTELKEDSSSSEAEEEEEEEDDEKEKED 293 Score = 31.6 bits (70), Expect = 2.2 Identities = 12/26 (46%), Positives = 20/26 (76%) Query: 131 EMEEDLGEDEEEEEEDYEDEEEEEDE 156 E++ED E EEEE+ ED+E+E+++ Sbjct: 268 ELKEDSSSSEAEEEEEEEDDEKEKED 293 Score = 30.4 bits (67), Expect = 4.8 Identities = 14/36 (38%), Positives = 23/36 (63%), Gaps = 2/36 (5%) Query: 122 DMKPKWEEEEMEEDLGEDEEEEEEDYEDEEEEEDEE 157 ++K E EE+ E+EE++E++ ED EE+EE Sbjct: 268 ELKEDSSSSEAEEE--EEEEDDEKEKEDNSSEEEEE 301 Score = 29.6 bits (65), Expect = 8.2 Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 9/58 (15%) Query: 90 EEDAAREGTPGSPGRGREGPGEEHFEDMASDEDMKPKWEEEEMEEDLGEDEEEEEEDY 147 EE+ A+ G + +E ED E+ + + EEEE E+D +EEEE E Y Sbjct: 521 EEEKAKSG---------DETNKEEDEDDEEAEEEEEEEEEEEDEDDDDNNEEEEFECY 569 >gi|155030232 proline, glutamic acid and leucine rich protein 1 [Homo sapiens] Length = 1130 Score = 63.5 bits (153), Expect = 5e-10 Identities = 50/147 (34%), Positives = 63/147 (42%), Gaps = 21/147 (14%) Query: 22 EARQQLPPDPP--AAPPGRARAAPDEDREPESARMQRAQMAALAAMRAAAAGLGHPASPG 79 E LPP PP A PP A P P A+ + ++ A A L P P Sbjct: 793 EGLPPLPPPPPSGATPPPIAPTGPPTASPPVPAKEEPEELPA------APGPLPPPPPPP 846 Query: 80 GSEDGPPGSEEEDAAREGTPGSPGRGR----------EGPGEEHFEDMASDEDMKPKWEE 129 GP EGTPG G EE E+ +E+ + EE Sbjct: 847 PPVPGPVTLPPPQLVPEGTPGGGGPPALEEDLTVININSSDEEEEEEEEEEEEEE---EE 903 Query: 130 EEMEEDLGEDEEEEEEDYEDEEEEEDE 156 EE EED E+EE+EEE +E+EEEEE+E Sbjct: 904 EEEEEDFEEEEEDEEEYFEEEEEEEEE 930 >gi|55956788 nucleolin [Homo sapiens] Length = 710 Score = 58.9 bits (141), Expect = 1e-08 Identities = 34/122 (27%), Positives = 62/122 (50%), Gaps = 2/122 (1%) Query: 44 DEDREPESARMQRAQMAALAAMRAAAAGLGHPASPGGSEDGPPGSEEEDAAREGTPGSPG 103 +ED E E + AA+ A AA A ++ EE+D+ E +P Sbjct: 157 EEDDEDEDEDEDEIEPAAMKAAAAAPASEDEDDEDDEDDEDDDDDEEDDSEEEAMETTPA 216 Query: 104 RGREGPG--EEHFEDMASDEDMKPKWEEEEMEEDLGEDEEEEEEDYEDEEEEEDEEGLGP 161 +G++ +++A DED + E+E+ ++D ++++++E+D E+EEEEE+E Sbjct: 217 KGKKAAKVVPVKAKNVAEDEDEEEDDEDEDDDDDEDDEDDDDEDDEEEEEEEEEEPVKEA 276 Query: 162 PG 163 PG Sbjct: 277 PG 278 Score = 45.8 bits (107), Expect = 1e-04 Identities = 38/160 (23%), Positives = 65/160 (40%), Gaps = 15/160 (9%) Query: 28 PPDPPAAPPGRARAAPDEDREPESARMQRAQMAALAAMRAAAAGLGHPASPG-------- 79 P A PG+ AA P + A+ + A G A+PG Sbjct: 77 PAKKAAVTPGKKAAAT-----PAKKTVTPAKAVTTPGKKGATPGKALVATPGKKGAAIPA 131 Query: 80 -GSEDGPPGSEEEDAAREGTPGSPGRGREGPGEEHFEDMASDEDMKPKWEEEEMEEDLGE 138 G+++G +++ED+ E S + E+ ED MK E++ E Sbjct: 132 KGAKNGK-NAKKEDSDEEEDDDSEEDEEDDEDEDEDEDEIEPAAMKAAAAAPASEDEDDE 190 Query: 139 DEEEEEEDYEDEEEEEDEEGLGPPGPASLGTTALFPRKAQ 178 D+E++E+D +DEE++ +EE + + P KA+ Sbjct: 191 DDEDDEDDDDDEEDDSEEEAMETTPAKGKKAAKVVPVKAK 230 Score = 32.3 bits (72), Expect = 1.3 Identities = 16/34 (47%), Positives = 17/34 (50%) Query: 546 APNKGGGGGGGSSSNAGGRGGNTGTSGGQAGPAG 579 A KG GG GG GG GG G GG+ G G Sbjct: 645 AKPKGEGGFGGRGGGRGGFGGRGGGRGGRGGFGG 678 Score = 30.0 bits (66), Expect = 6.3 Identities = 14/29 (48%), Positives = 14/29 (48%) Query: 551 GGGGGGSSSNAGGRGGNTGTSGGQAGPAG 579 GGG GG GGRGG G G G G Sbjct: 657 GGGRGGFGGRGGGRGGRGGFGGRGRGGFG 685 >gi|110618244 retinoblastoma binding protein 2 isoform 1 [Homo sapiens] Length = 1690 Score = 58.9 bits (141), Expect = 1e-08 Identities = 39/123 (31%), Positives = 69/123 (56%), Gaps = 8/123 (6%) Query: 216 QPP---DHGDWTYEEQFKQLYELDGDPK-RKEFLDDLFSFMQKRGTPVNRIPIMAKQVLD 271 QPP + + + + ++L EL+ + R +FLD L F + +G+ + +IP++ +++LD Sbjct: 58 QPPFACEVKSFRFTPRVQRLNELEAMTRVRLDFLDQLAKFWELQGSTL-KIPVVERKILD 116 Query: 272 LFMLYVLVTEKGGLVEVINKKLWREITKGLN-LPTSITSAAFTLRTQYMKYLYPYECEKR 330 L+ L +V KGG V +K W ++ L LP T + L++ Y + LYPYE + Sbjct: 117 LYALSKIVASKGGFEMVTKEKKWSKVGSRLGYLPGKGTGS--LLKSHYERILYPYELFQS 174 Query: 331 GLS 333 G+S Sbjct: 175 GVS 177 >gi|110618242 retinoblastoma binding protein 2 isoform 2 [Homo sapiens] Length = 1641 Score = 58.9 bits (141), Expect = 1e-08 Identities = 39/123 (31%), Positives = 69/123 (56%), Gaps = 8/123 (6%) Query: 216 QPP---DHGDWTYEEQFKQLYELDGDPK-RKEFLDDLFSFMQKRGTPVNRIPIMAKQVLD 271 QPP + + + + ++L EL+ + R +FLD L F + +G+ + +IP++ +++LD Sbjct: 58 QPPFACEVKSFRFTPRVQRLNELEAMTRVRLDFLDQLAKFWELQGSTL-KIPVVERKILD 116 Query: 272 LFMLYVLVTEKGGLVEVINKKLWREITKGLN-LPTSITSAAFTLRTQYMKYLYPYECEKR 330 L+ L +V KGG V +K W ++ L LP T + L++ Y + LYPYE + Sbjct: 117 LYALSKIVASKGGFEMVTKEKKWSKVGSRLGYLPGKGTGS--LLKSHYERILYPYELFQS 174 Query: 331 GLS 333 G+S Sbjct: 175 GVS 177 >gi|33946282 hypothetical protein LOC25962 isoform 1 [Homo sapiens] Length = 1812 Score = 57.8 bits (138), Expect = 3e-08 Identities = 49/164 (29%), Positives = 71/164 (43%), Gaps = 26/164 (15%) Query: 24 RQQLPPDPPAAPPGRARAAPDEDREPESARMQRAQMAALAAMRAAAAGLGHPASP---GG 80 R PP PP PP + + P R P+ A ++ + R G P P Sbjct: 136 RDSPPPPPPPPPPPQPQ--PSLKRNPKHADGEKEDQFNGSPPRPQPRGPRTPPGPPPPDD 193 Query: 81 SEDGP-----PGSEEEDAAREGT---PGSPGRGREGPGEEHFEDMASDEDMKPKWEEEEM 132 ED P G +EEDA P SP R ++ ++ +E+ + + EE+E Sbjct: 194 DEDDPVPLPVSGDKEEDAPHREDYFEPISPDRNSVPQEGQYSDEGEVEEEQQEEGEEDED 253 Query: 133 EEDLGEDEEE-------------EEEDYEDEEEEEDEEGLGPPG 163 + D+ E+E+E EEE+ E+EE EEDEEG G G Sbjct: 254 DVDVEEEEDEDEDDRRTVDSIPEEEEEDEEEEGEEDEEGEGDDG 297 >gi|33946280 hypothetical protein LOC25962 isoform 2 [Homo sapiens] Length = 1147 Score = 57.8 bits (138), Expect = 3e-08 Identities = 49/164 (29%), Positives = 71/164 (43%), Gaps = 26/164 (15%) Query: 24 RQQLPPDPPAAPPGRARAAPDEDREPESARMQRAQMAALAAMRAAAAGLGHPASP---GG 80 R PP PP PP + + P R P+ A ++ + R G P P Sbjct: 136 RDSPPPPPPPPPPPQPQ--PSLKRNPKHADGEKEDQFNGSPPRPQPRGPRTPPGPPPPDD 193 Query: 81 SEDGP-----PGSEEEDAAREGT---PGSPGRGREGPGEEHFEDMASDEDMKPKWEEEEM 132 ED P G +EEDA P SP R ++ ++ +E+ + + EE+E Sbjct: 194 DEDDPVPLPVSGDKEEDAPHREDYFEPISPDRNSVPQEGQYSDEGEVEEEQQEEGEEDED 253 Query: 133 EEDLGEDEEE-------------EEEDYEDEEEEEDEEGLGPPG 163 + D+ E+E+E EEE+ E+EE EEDEEG G G Sbjct: 254 DVDVEEEEDEDEDDRRTVDSIPEEEEEDEEEEGEEDEEGEGDDG 297 >gi|17975763 myelin transcription factor 1 [Homo sapiens] Length = 1121 Score = 57.4 bits (137), Expect = 4e-08 Identities = 44/124 (35%), Positives = 60/124 (48%), Gaps = 15/124 (12%) Query: 81 SEDGPPGSEEEDAAREGTPGSPGRGREGPGEEHFEDMASDEDMKPKWEEEEMEEDLGEDE 140 S+D P S E+ A+ E S +G EE E+ +E+ + EEEE EE+ E+E Sbjct: 232 SQDLCPQSLEDAASEES---SKQKGILSHEEEDEEEEEEEEEEEEDEEEEEEEEEEEEEE 288 Query: 141 EEEEEDYEDEEEEEDEEGLGPPGPASLGTTALFPRKAQPPQAFRGDGVPRVLGGQERPGP 200 EEEEE+ E+EEEEE+EE P T+ +KA L G E P P Sbjct: 289 EEEEEEEEEEEEEEEEEEAAPDVIFQEDTSHTSAQKAPE------------LRGPESPSP 336 Query: 201 GPAH 204 P + Sbjct: 337 KPEY 340 Score = 35.4 bits (80), Expect = 0.15 Identities = 36/115 (31%), Positives = 44/115 (38%), Gaps = 50/115 (43%) Query: 90 EEDAAREGTPGSPGRGREGPGEEHFEDMASDE------------------------DMKP 125 EED G PG G +E E AS+E D+ P Sbjct: 181 EEDL---GQAAKPGPGIVHLLQEAAEGAASEEGEKGLFIQPEDAEEVVEVTTERSQDLCP 237 Query: 126 K-----------------------WEEEEMEEDLGEDEEEEEEDYEDEEEEEDEE 157 + EEEE EE+ EDEEEEEE+ E+EEEEE+EE Sbjct: 238 QSLEDAASEESSKQKGILSHEEEDEEEEEEEEEEEEDEEEEEEEEEEEEEEEEEE 292 >gi|94536805 splicing factor YT521-B isoform 2 [Homo sapiens] Length = 709 Score = 57.4 bits (137), Expect = 4e-08 Identities = 38/114 (33%), Positives = 58/114 (50%), Gaps = 3/114 (2%) Query: 44 DEDREPESARMQRAQMAALAAMRAAAAGLGHPASPGGSEDGPPGSEEEDAAREGTPGSPG 103 D +R +S ++ L R A+ SE+ GS+ E + G+ G Sbjct: 139 DPERRAKSPTPDGSERIGLEVDRRASRSSQSSKEEVNSEEY--GSDHETGS-SGSSDEQG 195 Query: 104 RGREGPGEEHFEDMASDEDMKPKWEEEEMEEDLGEDEEEEEEDYEDEEEEEDEE 157 E E ED+ DE+++ EE+E ++ GE+EEEEEE+ E+EEEEE+EE Sbjct: 196 NNTENEEEGVEEDVEEDEEVEEDAEEDEEVDEDGEEEEEEEEEEEEEEEEEEEE 249 Score = 55.1 bits (131), Expect = 2e-07 Identities = 42/126 (33%), Positives = 57/126 (45%), Gaps = 15/126 (11%) Query: 35 PPGRARAAPDEDREPESARMQRAQMAALAAMRAAAAGLGHPASPGGSED--GPPGSEEED 92 P G R + DR R R+ ++ + + G H GS D G EE+ Sbjct: 149 PDGSERIGLEVDR-----RASRSSQSSKEEVNSEEYGSDHETGSSGSSDEQGNNTENEEE 203 Query: 93 AAREGTPGSPGRGREGPGEEHFEDMASDEDMKPKWEEEEMEEDLGEDEEEEEEDYEDEEE 152 E E E+ ED DED + + EEEE EE E+EEEEEE+YE +E Sbjct: 204 GVEEDVEED-----EEVEEDAEEDEEVDEDGEEEEEEEEEEE---EEEEEEEEEYEQDER 255 Query: 153 EEDEEG 158 ++ EEG Sbjct: 256 DQKEEG 261 >gi|72534750 splicing factor YT521-B isoform 1 [Homo sapiens] Length = 727 Score = 57.4 bits (137), Expect = 4e-08 Identities = 38/114 (33%), Positives = 58/114 (50%), Gaps = 3/114 (2%) Query: 44 DEDREPESARMQRAQMAALAAMRAAAAGLGHPASPGGSEDGPPGSEEEDAAREGTPGSPG 103 D +R +S ++ L R A+ SE+ GS+ E + G+ G Sbjct: 139 DPERRAKSPTPDGSERIGLEVDRRASRSSQSSKEEVNSEEY--GSDHETGS-SGSSDEQG 195 Query: 104 RGREGPGEEHFEDMASDEDMKPKWEEEEMEEDLGEDEEEEEEDYEDEEEEEDEE 157 E E ED+ DE+++ EE+E ++ GE+EEEEEE+ E+EEEEE+EE Sbjct: 196 NNTENEEEGVEEDVEEDEEVEEDAEEDEEVDEDGEEEEEEEEEEEEEEEEEEEE 249 Score = 55.1 bits (131), Expect = 2e-07 Identities = 42/126 (33%), Positives = 57/126 (45%), Gaps = 15/126 (11%) Query: 35 PPGRARAAPDEDREPESARMQRAQMAALAAMRAAAAGLGHPASPGGSED--GPPGSEEED 92 P G R + DR R R+ ++ + + G H GS D G EE+ Sbjct: 149 PDGSERIGLEVDR-----RASRSSQSSKEEVNSEEYGSDHETGSSGSSDEQGNNTENEEE 203 Query: 93 AAREGTPGSPGRGREGPGEEHFEDMASDEDMKPKWEEEEMEEDLGEDEEEEEEDYEDEEE 152 E E E+ ED DED + + EEEE EE E+EEEEEE+YE +E Sbjct: 204 GVEEDVEED-----EEVEEDAEEDEEVDEDGEEEEEEEEEEE---EEEEEEEEEYEQDER 255 Query: 153 EEDEEG 158 ++ EEG Sbjct: 256 DQKEEG 261 >gi|109255243 jumonji, AT rich interactive domain 1C isoform 1 [Homo sapiens] Length = 1560 Score = 57.0 bits (136), Expect = 5e-08 Identities = 36/135 (26%), Positives = 69/135 (51%), Gaps = 8/135 (5%) Query: 203 AHPGGAAHVAPQL--QPP---DHGDWTYEEQFKQLYELDGDPKRK-EFLDDLFSFMQKRG 256 A G + P QPP + ++ + + ++L EL+ + K +LD + F + +G Sbjct: 38 AEKSGICKIRPPADWQPPFAVEVDNFRFTPRIQRLNELEAQTRVKLNYLDQIAKFWEIQG 97 Query: 257 TPVNRIPIMAKQVLDLFMLYVLVTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRT 316 + + +IP + +++LDL+ L +V E+GG + + W + + LN P + LR+ Sbjct: 98 SSL-KIPNVERRILDLYSLSKIVVEEGGYEAICKDRRWARVAQRLNYPPG-KNIGSLLRS 155 Query: 317 QYMKYLYPYECEKRG 331 Y + +YPYE + G Sbjct: 156 HYERIVYPYEMYQSG 170 Score = 30.4 bits (67), Expect = 4.8 Identities = 23/65 (35%), Positives = 28/65 (43%), Gaps = 1/65 (1%) Query: 100 GSPGRGREGPGEEHFEDMASDEDMKPKWEEEEMEEDLGEDEEEEEEDYEDEEEEEDEEGL 159 GS RGR + E P EE E + + E EE E+EE EE+ G Sbjct: 1447 GSRARGRALERRRRRKVDRGGEGDDPAREELEPKR-VRSSGPEAEEVQEEEELEEETGGE 1505 Query: 160 GPPGP 164 GPP P Sbjct: 1506 GPPAP 1510 >gi|78190492 retinitis pigmentosa GTPase regulator isoform C [Homo sapiens] Length = 1152 Score = 56.2 bits (134), Expect = 8e-08 Identities = 36/85 (42%), Positives = 44/85 (51%), Gaps = 3/85 (3%) Query: 79 GGSEDGPPGSEEEDAAREGTPGSPGRGREGPG---EEHFEDMASDEDMKPKWEEEEMEED 135 G E+G EEE+ EG G G EG G EE E +E+ + + EEE E+ Sbjct: 948 GEEEEGEWEGEEEEGEGEGEEEGEGEGEEGEGEGEEEEGEGEGEEEEGEEEGEEEGEGEE 1007 Query: 136 LGEDEEEEEEDYEDEEEEEDEEGLG 160 GE E EEEE+ E E E E EEG G Sbjct: 1008 EGEGEGEEEEEGEVEGEVEGEEGEG 1032 Score = 52.0 bits (123), Expect = 2e-06 Identities = 32/80 (40%), Positives = 43/80 (53%), Gaps = 1/80 (1%) Query: 80 GSEDGPPGSEEEDAAREGTPGSPGRGREGPGEEHFEDMASDEDMKPKWEEEEMEEDLGED 139 G E+G EEE+ EG G G E GE E+ + + + + EE E E + GE Sbjct: 887 GEEEGEGEGEEEEGEGEGEEEGEGEGEEEEGEGKGEEEGEEGEGEGEEEEGEGEGEDGEG 946 Query: 140 E-EEEEEDYEDEEEEEDEEG 158 E EEEE ++E EEEE + EG Sbjct: 947 EGEEEEGEWEGEEEEGEGEG 966 Score = 50.1 bits (118), Expect = 6e-06 Identities = 34/88 (38%), Positives = 44/88 (50%), Gaps = 10/88 (11%) Query: 80 GSEDGPPGSEEEDAAREGTPGSPGRGREGPGEEHFEDMASDEDMKPKWEEEEMEEDLGED 139 G E+ G EE+ EG G G G E GE E+ +E+ + + E EE E GE+ Sbjct: 957 GEEEEGEGEGEEEGEGEGEEGE-GEGEEEEGEGEGEEEEGEEEGEEEGEGEEEGEGEGEE 1015 Query: 140 EEE---------EEEDYEDEEEEEDEEG 158 EEE EE + E EEEE +EEG Sbjct: 1016 EEEGEVEGEVEGEEGEGEGEEEEGEEEG 1043 Score = 48.5 bits (114), Expect = 2e-05 Identities = 39/88 (44%), Positives = 46/88 (52%), Gaps = 10/88 (11%) Query: 80 GSEDGPPGS---EEEDAAREGTPGSPGRGRE----GPGEEHFEDMASDEDMKPKWEEEEM 132 G E+G G EEE+ EG G G E G GEE E +E+ + K EEE Sbjct: 867 GEEEGEEGEGEGEEEEGEGEGEEEGEGEGEEEEGEGEGEEEGEGEGEEEEGEGKGEEEG- 925 Query: 133 EEDLGEDEEEE-EEDYED-EEEEEDEEG 158 EE GE EEEE E + ED E E E+EEG Sbjct: 926 EEGEGEGEEEEGEGEGEDGEGEGEEEEG 953 Score = 47.0 bits (110), Expect = 5e-05 Identities = 40/132 (30%), Positives = 56/132 (42%), Gaps = 11/132 (8%) Query: 79 GGSEDGPPGSEEEDAAREGTPGSPGRGREGPGEEHFEDMASDEDMKPKWEEEEMEEDLGE 138 GG E+ G EEE+ RE G G+E E E E+ + K EE +E+ GE Sbjct: 730 GGEEEHGEG-EEEEGDREEEEEKEGEGKEEGEGEEVEGEREKEEGERKKEERAGKEEKGE 788 Query: 139 DE----EEEEEDYEDEEEEEDEEGLGPPGPASLGTTALFPRKAQPPQAFRGDGVPRVLGG 194 +E E EEE+ E EE++E G G G + + + G+G G Sbjct: 789 EEGDQGEGEEEETEGRGEEKEEGGEVEGGEVEEG------KGEREEEEEEGEGEEEEGEG 842 Query: 195 QERPGPGPAHPG 206 +E G G G Sbjct: 843 EEEEGEGEEEEG 854 Score = 46.6 bits (109), Expect = 6e-05 Identities = 43/149 (28%), Positives = 63/149 (42%), Gaps = 31/149 (20%) Query: 42 APDEDREPESARMQRAQMAALAAMRAAAAGLGHPASPGGSEDGPPGSEE----------- 90 A +E+ + R ++ ++ + A G S G +EDGP G + Sbjct: 608 ANEENVKVHGGRKEKTEILSDDLTDKAEVSEGKAKSVGEAEDGPEGRGDGTCEEGSSGAE 667 Query: 91 --EDAAREGTPGSPGRGR-EGPGEEHFEDMASDEDMKPKWEEE----------------E 131 +D RE GRG E PGE +++A E+ K + EE E Sbjct: 668 HWQDEEREKGEKDKGRGEMERPGEGE-KELAEKEEWKKRDGEEQEQKEREQGHQKERNQE 726 Query: 132 MEEDLGEDEEEEEEDYEDEEEEEDEEGLG 160 MEE E+ E EE+ D EEEE++EG G Sbjct: 727 MEEGGEEEHGEGEEEEGDREEEEEKEGEG 755 Score = 46.6 bits (109), Expect = 6e-05 Identities = 35/92 (38%), Positives = 44/92 (47%), Gaps = 5/92 (5%) Query: 71 GLGHPASPGGSEDGPPGSEEEDAAREGTP--GSPGRGREGPGEEHFEDMASDEDMKPKWE 128 G G G E+G EEE+ EG G EG GEE E +E+ Sbjct: 964 GEGEEEGEGEGEEGEGEGEEEEGEGEGEEEEGEEEGEEEGEGEEEGEGEGEEEEEGEV-- 1021 Query: 129 EEEMEEDLGEDEEEEEEDYEDEEEEEDEEGLG 160 E E+E + GE E EEEE E+E EE ++EG G Sbjct: 1022 EGEVEGEEGEGEGEEEEG-EEEGEEREKEGEG 1052 Score = 46.2 bits (108), Expect = 8e-05 Identities = 38/98 (38%), Positives = 44/98 (44%), Gaps = 8/98 (8%) Query: 71 GLGHPASPGGSEDGPPGSEEEDAAREGTPGSPGRGREGPGE-EHFEDMASDEDMKPKWEE 129 G G G +G E E EG G EG GE E E ED + + EE Sbjct: 891 GEGEGEEEEGEGEGEEEGEGEGEEEEGEGKGEEEGEEGEGEGEEEEGEGEGEDGEGEGEE 950 Query: 130 E----EMEEDLGEDEEEEEEDYEDEE---EEEDEEGLG 160 E E EE+ GE E EEE + E EE E E+EEG G Sbjct: 951 EEGEWEGEEEEGEGEGEEEGEGEGEEGEGEGEEEEGEG 988 Score = 45.8 bits (107), Expect = 1e-04 Identities = 46/165 (27%), Positives = 61/165 (36%), Gaps = 14/165 (8%) Query: 71 GLGHPASPGGSEDGPPGSEEEDAAREGTPGSPGRGREGPGEEHFEDMASDEDMKPKWEEE 130 G G GG +G E + E G EG GEE E +E+ + K EEE Sbjct: 803 GRGEEKEEGGEVEGGEVEEGKGEREEEEEEGEGEEEEGEGEEE-EGEGEEEEGEGKGEEE 861 Query: 131 EMEEDLGEDEEEEEEDYEDEEEEEDEEGLGPPGPASLGTTALFPRKAQPPQAFRGDGVPR 190 GE+ E EEE E E E E+EEG G G + + + G+G Sbjct: 862 ------GEEGEGEEEGEEGEGEGEEEEGEGEGEEEGEGEGEEEEGEGEGEEEGEGEGEEE 915 Query: 191 ------VLGGQERPGPGPAHPG-GAAHVAPQLQPPDHGDWTYEEQ 228 G+E G G G G + G+W EE+ Sbjct: 916 EGEGKGEEEGEEGEGEGEEEEGEGEGEDGEGEGEEEEGEWEGEEE 960 Score = 45.8 bits (107), Expect = 1e-04 Identities = 37/89 (41%), Positives = 45/89 (50%), Gaps = 12/89 (13%) Query: 80 GSEDGPPGSEEEDAA----REGTPGSPGRGREGPGEEHFEDMASD-EDMKPKWEEEEMEE 134 G E+G EEE+ EG G G G E GE ED + E+ + +WE EE EE Sbjct: 904 GEEEGEGEGEEEEGEGKGEEEGEEGE-GEGEEEEGEGEGEDGEGEGEEEEGEWEGEE-EE 961 Query: 135 DLGEDEEE-----EEEDYEDEEEEEDEEG 158 GE EEE EE + E EEEE + EG Sbjct: 962 GEGEGEEEGEGEGEEGEGEGEEEEGEGEG 990 Score = 45.8 bits (107), Expect = 1e-04 Identities = 35/83 (42%), Positives = 44/83 (53%), Gaps = 8/83 (9%) Query: 80 GSEDGPPGS---EEEDAAREGTPGSPGRGREGPGEEHFEDMASDEDMKPKWEEEEMEEDL 136 G E+G G EEE+ EG G G G E GE E+ + + + EE E E + Sbjct: 921 GEEEGEEGEGEGEEEEGEGEGEDGE-GEGEEEEGEWEGEEEEGEGEGE---EEGEGEGEE 976 Query: 137 GEDE-EEEEEDYEDEEEEEDEEG 158 GE E EEEE + E EEEE +EEG Sbjct: 977 GEGEGEEEEGEGEGEEEEGEEEG 999 Score = 45.1 bits (105), Expect = 2e-04 Identities = 35/91 (38%), Positives = 44/91 (48%), Gaps = 11/91 (12%) Query: 80 GSEDGPPGSEEEDAAR-------EGTPGSPGRGREGPGE---EHFEDMASDEDMKPKWEE 129 G E+G G EE+ EG G EG GE E E +E+ + + EE Sbjct: 787 GEEEGDQGEGEEEETEGRGEEKEEGGEVEGGEVEEGKGEREEEEEEGEGEEEEGEGEEEE 846 Query: 130 EEMEEDLGEDEEEEEEDYEDEEEEEDEEGLG 160 E EE+ GE + EEE + E E EEE EEG G Sbjct: 847 GEGEEEEGEGKGEEEGE-EGEGEEEGEEGEG 876 Score = 45.1 bits (105), Expect = 2e-04 Identities = 33/91 (36%), Positives = 44/91 (48%), Gaps = 5/91 (5%) Query: 71 GLGHPASPGGSEDGPPGSEEEDAAREGTPGSPGRGREGPGEEHFEDMASDEDMKPKWEEE 130 G G G + G EE + EG G G E E E E+ + + EEE Sbjct: 979 GEGEEEEGEGEGEEEEGEEEGEEEGEGEEEGEGEGEE-EEEGEVEGEVEGEEGEGEGEEE 1037 Query: 131 EMEEDLGEDEEEE---EEDYEDEEEEEDEEG 158 E EE+ GE+ E+E EE+ + EEEE+EEG Sbjct: 1038 EGEEE-GEEREKEGEGEENRRNREEEEEEEG 1067 Score = 43.9 bits (102), Expect = 4e-04 Identities = 28/77 (36%), Positives = 38/77 (49%), Gaps = 3/77 (3%) Query: 80 GSEDGPPGSEEEDAAREGTPGSPGRGREGPGEEHFEDMASDEDMKPKWEEEEMEEDLGED 139 G E+G EEE+ EG G EG GE E+ + + + K E E E+ Sbjct: 1005 GEEEGEGEGEEEE---EGEVEGEVEGEEGEGEGEEEEGEEEGEEREKEGEGEENRRNREE 1061 Query: 140 EEEEEEDYEDEEEEEDE 156 EEEEE Y++ EEE+E Sbjct: 1062 EEEEEGKYQETGEEENE 1078 Score = 41.6 bits (96), Expect = 0.002 Identities = 41/127 (32%), Positives = 55/127 (43%), Gaps = 15/127 (11%) Query: 44 DEDREPESARMQRAQMAALAAMRAAAAGLGHPASPGGSEDGPPGSEEEDAAREGTPGSPG 103 +E+ E E + + + R G G E+ G EE D + G Sbjct: 746 EEEEEKEGEGKEEGEGEEVEGEREKEEGERKKEERAGKEE--KGEEEGDQGEGEEEETEG 803 Query: 104 RGREGPGEEHFEDMASDEDMKPKWE-EEEMEEDLGEDEE----EEEEDYEDEE-----EE 153 RG E +E ++ E + K E EEE EE GE+EE EEE + E+EE EE Sbjct: 804 RGEE---KEEGGEVEGGEVEEGKGEREEEEEEGEGEEEEGEGEEEEGEGEEEEGEGKGEE 860 Query: 154 EDEEGLG 160 E EEG G Sbjct: 861 EGEEGEG 867 Score = 34.3 bits (77), Expect = 0.33 Identities = 20/54 (37%), Positives = 29/54 (53%) Query: 107 EGPGEEHFEDMASDEDMKPKWEEEEMEEDLGEDEEEEEEDYEDEEEEEDEEGLG 160 EG EEH E + D + + E+E ++ GE EE E E ++E E + EE G Sbjct: 729 EGGEEEHGEGEEEEGDREEEEEKEGEGKEEGEGEEVEGEREKEEGERKKEERAG 782 Score = 33.1 bits (74), Expect = 0.74 Identities = 25/71 (35%), Positives = 35/71 (49%), Gaps = 4/71 (5%) Query: 87 GSEEEDAARE-GTPGSPGRGREGPGEEHFEDMASDEDMKPKWEEEEMEEDLGEDEEEEEE 145 G E+E RE G + E GEE + +E + EEEE +E G++E E EE Sbjct: 707 GEEQEQKEREQGHQKERNQEMEEGGEEEHGEGEEEEGDR---EEEEEKEGEGKEEGEGEE 763 Query: 146 DYEDEEEEEDE 156 + E+EE E Sbjct: 764 VEGEREKEEGE 774 >gi|166795264 AE binding protein 2 isoform b [Homo sapiens] Length = 517 Score = 56.2 bits (134), Expect = 8e-08 Identities = 58/208 (27%), Positives = 76/208 (36%), Gaps = 30/208 (14%) Query: 20 ELEARQQLPPDPPAAP--PGRARAAPDEDREPESARMQRAQMAALAAMRAAAAGLGHPAS 77 +LE +L P PP +P R RA P E+ E E + A+ A+AA+ G Sbjct: 10 DLEELSRLSPLPPGSPGSAARGRAEPPEEEEEEEEEEEEAEAEAVAALLLNG---GSGGG 66 Query: 78 PGGSEDGPPGSEEEDAAREGTPGSPGRGREGPGEEHFEDMASDEDMKPKWEEEEMEEDLG 137 GG G G E E T P S E E+E+ EED Sbjct: 67 GGGGGGGVGGGEAE------TMSEP----------------SPESASQAGEDEDEEEDDE 104 Query: 138 EDEEEEEEDYEDEEEEEDEEGLGPPGPASLGTTALFPRKAQPPQAFRGDGVPRVLGGQER 197 E+E+E EEE E +G G +S T A + GDG G +E Sbjct: 105 EEEDESSSSGGGEEESSAESLVGSSGGSSSDETRSLSPGAASSSSGDGDGKE---GLEEP 161 Query: 198 PGPGPAHPGGAAHVAPQLQPPDHGDWTY 225 GP + GG + GD Y Sbjct: 162 KGPRGSQGGGGGGSSSSSVVSSGGDEGY 189 Score = 33.9 bits (76), Expect = 0.43 Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 10/45 (22%) Query: 548 NKGGGGGGGSSSN----------AGGRGGNTGTSGGQAGPAGLST 582 ++GGGGGG SSS+ G GG++ TSGG+ G +S+ Sbjct: 167 SQGGGGGGSSSSSVVSSGGDEGYGTGGGGSSATSGGRRGSLEMSS 211 >gi|166795262 AE binding protein 2 isoform a [Homo sapiens] Length = 503 Score = 56.2 bits (134), Expect = 8e-08 Identities = 58/208 (27%), Positives = 76/208 (36%), Gaps = 30/208 (14%) Query: 20 ELEARQQLPPDPPAAP--PGRARAAPDEDREPESARMQRAQMAALAAMRAAAAGLGHPAS 77 +LE +L P PP +P R RA P E+ E E + A+ A+AA+ G Sbjct: 10 DLEELSRLSPLPPGSPGSAARGRAEPPEEEEEEEEEEEEAEAEAVAALLLNG---GSGGG 66 Query: 78 PGGSEDGPPGSEEEDAAREGTPGSPGRGREGPGEEHFEDMASDEDMKPKWEEEEMEEDLG 137 GG G G E E T P S E E+E+ EED Sbjct: 67 GGGGGGGVGGGEAE------TMSEP----------------SPESASQAGEDEDEEEDDE 104 Query: 138 EDEEEEEEDYEDEEEEEDEEGLGPPGPASLGTTALFPRKAQPPQAFRGDGVPRVLGGQER 197 E+E+E EEE E +G G +S T A + GDG G +E Sbjct: 105 EEEDESSSSGGGEEESSAESLVGSSGGSSSDETRSLSPGAASSSSGDGDGKE---GLEEP 161 Query: 198 PGPGPAHPGGAAHVAPQLQPPDHGDWTY 225 GP + GG + GD Y Sbjct: 162 KGPRGSQGGGGGGSSSSSVVSSGGDEGY 189 Score = 33.9 bits (76), Expect = 0.43 Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 10/45 (22%) Query: 548 NKGGGGGGGSSSN----------AGGRGGNTGTSGGQAGPAGLST 582 ++GGGGGG SSS+ G GG++ TSGG+ G +S+ Sbjct: 167 SQGGGGGGSSSSSVVSSGGDEGYGTGGGGSSATSGGRRGSLEMSS 211 >gi|119709834 castor homolog 1, zinc finger isoform a [Homo sapiens] Length = 1759 Score = 55.5 bits (132), Expect = 1e-07 Identities = 34/101 (33%), Positives = 55/101 (54%), Gaps = 10/101 (9%) Query: 57 AQMAALAAMRAAAAGLGHPASPGGSEDGPPGSEEEDAAREGTPGSPGRGREGPGEEHFED 116 A+ +L +++AAAGLG G + GPP DAA G P G E Sbjct: 1624 AEPGSLLFLQSAAAGLGLALGDAG-DPGPP-----DAAAPG----PREGAAAAAAAAGES 1673 Query: 117 MASDEDMKPKWEEEEMEEDLGEDEEEEEEDYEDEEEEEDEE 157 DE+ + + EEE E+D ED++E+++D +D+E+++DE+ Sbjct: 1674 SQEDEEEELELPEEEAEDDEDEDDDEDDDDEDDDEDDDDED 1714 >gi|33356560 jumonji, AT rich interactive domain 1D isoform 2 [Homo sapiens] Length = 1539 Score = 54.7 bits (130), Expect = 2e-07 Identities = 35/138 (25%), Positives = 71/138 (51%), Gaps = 8/138 (5%) Query: 203 AHPGGAAHVAPQL--QPP---DHGDWTYEEQFKQLYELDGDPKRK-EFLDDLFSFMQKRG 256 A G + P QPP + ++ + + ++L EL+ + K +LD + F + +G Sbjct: 38 AEKSGICKIRPPADWQPPFAVEVDNFRFTPRVQRLNELEAQTRVKLNYLDQIAKFWEIQG 97 Query: 257 TPVNRIPIMAKQVLDLFMLYVLVTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRT 316 + + +IP + +++LDL+ L +V E+GG + + W + + L+ P + LR+ Sbjct: 98 SSL-KIPNVERKILDLYSLSKIVIEEGGYEAICKDRRWARVAQRLHYPPG-KNIGSLLRS 155 Query: 317 QYMKYLYPYECEKRGLSN 334 Y + +YPYE + G ++ Sbjct: 156 HYERIIYPYEMFQSGANH 173 >gi|226442991 jumonji, AT rich interactive domain 1D isoform 1 [Homo sapiens] Length = 1570 Score = 54.7 bits (130), Expect = 2e-07 Identities = 35/138 (25%), Positives = 71/138 (51%), Gaps = 8/138 (5%) Query: 203 AHPGGAAHVAPQL--QPP---DHGDWTYEEQFKQLYELDGDPKRK-EFLDDLFSFMQKRG 256 A G + P QPP + ++ + + ++L EL+ + K +LD + F + +G Sbjct: 38 AEKSGICKIRPPADWQPPFAVEVDNFRFTPRVQRLNELEAQTRVKLNYLDQIAKFWEIQG 97 Query: 257 TPVNRIPIMAKQVLDLFMLYVLVTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRT 316 + + +IP + +++LDL+ L +V E+GG + + W + + L+ P + LR+ Sbjct: 98 SSL-KIPNVERKILDLYSLSKIVIEEGGYEAICKDRRWARVAQRLHYPPG-KNIGSLLRS 155 Query: 317 QYMKYLYPYECEKRGLSN 334 Y + +YPYE + G ++ Sbjct: 156 HYERIIYPYEMFQSGANH 173 Database: hs.faa Posted date: Aug 4, 2009 4:42 PM Number of letters in database: 18,247,518 Number of sequences in database: 37,866 Lambda K H 0.309 0.129 0.366 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 29,591,081 Number of Sequences: 37866 Number of extensions: 1930566 Number of successful extensions: 53066 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 879 Number of HSP's successfully gapped in prelim test: 1116 Number of HSP's that attempted gapping in prelim test: 21172 Number of HSP's gapped (non-prelim): 17002 length of query: 593 length of database: 18,247,518 effective HSP length: 108 effective length of query: 485 effective length of database: 14,157,990 effective search space: 6866625150 effective search space used: 6866625150 T: 11 A: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.7 bits) S2: 65 (29.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.