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Search of human proteins with 4885187
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|4885187 distal-less homeobox 5 [Homo sapiens]
(289 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|4885187 distal-less homeobox 5 [Homo sapiens] 598 e-171
gi|4885185 distal-less homeobox 3 [Homo sapiens] 259 2e-69
gi|4758168 distal-less homeobox 2 [Homo sapiens] 227 1e-59
gi|82659115 distal-less homeobox 6 [Homo sapiens] 158 5e-39
gi|64225290 distal-less homeobox 1 isoform 1 [Homo sapiens] 150 1e-36
gi|20143962 distal-less homeobox 4 isoform a [Homo sapiens] 117 9e-27
gi|20143960 distal-less homeobox 4 isoform b [Homo sapiens] 117 9e-27
gi|27886557 msh homeobox 2 [Homo sapiens] 96 5e-20
gi|6633798 BarH-like homeobox 2 [Homo sapiens] 81 9e-16
gi|147901462 brain specific homeobox [Homo sapiens] 80 2e-15
gi|118582284 msh homeobox 1 [Homo sapiens] 80 2e-15
gi|24497526 homeobox B1 [Homo sapiens] 79 5e-15
gi|148746211 NK2 transcription factor related, locus 3 [Homo sap... 79 6e-15
gi|153218470 BarH-like homeobox 1 [Homo sapiens] 77 1e-14
gi|116174748 developing brain homeobox 2 [Homo sapiens] 77 2e-14
gi|5031761 homeobox A1 isoform a [Homo sapiens] 75 5e-14
gi|210147470 NK2 transcription factor related, locus 6 [Homo sap... 74 1e-13
gi|24497589 aristaless related homeobox [Homo sapiens] 74 1e-13
gi|24497547 homeobox C9 [Homo sapiens] 74 2e-13
gi|4502365 NK3 homeobox 2 [Homo sapiens] 73 3e-13
gi|24497515 homeobox A3 isoform b [Homo sapiens] 72 4e-13
gi|24497513 homeobox A3 isoform a [Homo sapiens] 72 4e-13
gi|13562112 homeobox A3 isoform a [Homo sapiens] 72 4e-13
gi|4505401 NK2 transcription factor related, locus 2 [Homo sapiens] 72 4e-13
gi|14149728 BarH-like homeobox 1 [Homo sapiens] 72 4e-13
gi|226437602 NK1 homeobox 2 [Homo sapiens] 72 7e-13
gi|239755439 PREDICTED: NK1 homeobox 2 [Homo sapiens] 72 7e-13
gi|239749920 PREDICTED: NK1 homeobox 2 [Homo sapiens] 72 7e-13
gi|239744223 PREDICTED: NK1 homeobox 2 [Homo sapiens] 72 7e-13
gi|89257348 homeo box HB9 [Homo sapiens] 72 7e-13
>gi|4885187 distal-less homeobox 5 [Homo sapiens]
Length = 289
Score = 598 bits (1542), Expect = e-171
Identities = 289/289 (100%), Positives = 289/289 (100%)
Query: 1 MTGVFDRRVPSIRSGDFQAPFQTSAAMHHPSQESPTLPESSATDSDYYSPTGGAPHGYCS 60
MTGVFDRRVPSIRSGDFQAPFQTSAAMHHPSQESPTLPESSATDSDYYSPTGGAPHGYCS
Sbjct: 1 MTGVFDRRVPSIRSGDFQAPFQTSAAMHHPSQESPTLPESSATDSDYYSPTGGAPHGYCS 60
Query: 61 PTSASYGKALNPYQYQYHGVNGSAGSYPAKAYADYSYASSYHQYGGAYNRVPSATNQPEK 120
PTSASYGKALNPYQYQYHGVNGSAGSYPAKAYADYSYASSYHQYGGAYNRVPSATNQPEK
Sbjct: 61 PTSASYGKALNPYQYQYHGVNGSAGSYPAKAYADYSYASSYHQYGGAYNRVPSATNQPEK 120
Query: 121 EVTEPEVRMVNGKPKKVRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQ 180
EVTEPEVRMVNGKPKKVRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQ
Sbjct: 121 EVTEPEVRMVNGKPKKVRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQ 180
Query: 181 VKIWFQNKRSKIKKIMKNGEMPPEHSPSSSDPMACNSPQSPAVWEPQGSSRSLSHHPHAH 240
VKIWFQNKRSKIKKIMKNGEMPPEHSPSSSDPMACNSPQSPAVWEPQGSSRSLSHHPHAH
Sbjct: 181 VKIWFQNKRSKIKKIMKNGEMPPEHSPSSSDPMACNSPQSPAVWEPQGSSRSLSHHPHAH 240
Query: 241 PPTSNQSPASSYLENSASWYTSAASSINSHLPPPGSLQHPLALASGTLY 289
PPTSNQSPASSYLENSASWYTSAASSINSHLPPPGSLQHPLALASGTLY
Sbjct: 241 PPTSNQSPASSYLENSASWYTSAASSINSHLPPPGSLQHPLALASGTLY 289
>gi|4885185 distal-less homeobox 3 [Homo sapiens]
Length = 287
Score = 259 bits (662), Expect = 2e-69
Identities = 151/287 (52%), Positives = 184/287 (64%), Gaps = 21/287 (7%)
Query: 1 MTGVFDRRVPSIRSGDFQAPFQTSAAMHHPSQESPTLPESSATDSDYYSPTGGAP-HGYC 59
M+G FDR++ SI + +S + H S++SPTLPESS TD YYS AP H Y
Sbjct: 1 MSGSFDRKLSSILTD-----ISSSLSCHAGSKDSPTLPESSVTDLGYYS----APQHDYY 51
Query: 60 SPTSASYGKALNPYQYQYH-GVNGSAGSYPAKAYADYSYASSYHQYGGAYNRVPSATNQP 118
S YG+ +NPY Y + +NG AG+ ++Y+Y +SY QYG AY P P
Sbjct: 52 S--GQPYGQTVNPYTYHHQFNLNGLAGTGAYSPKSEYTYGASYRQYG-AYREQPLPAQDP 108
Query: 119 E--KEVTEPEVRMVNGKPKKVRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGL 176
KE E EVRMVNGKPKKVRKPRTIYSS+QLAALQRRFQK QYLALPERAELAA LGL
Sbjct: 109 VSVKEEPEAEVRMVNGKPKKVRKPRTIYSSYQLAALQRRFQKAQYLALPERAELAAQLGL 168
Query: 177 TQTQVKIWFQNKRSKIKKIMKNGEMPPEHSPSSSDPMACNSPQSPAVWEPQGSSRSLSHH 236
TQTQVKIWFQN+RSK KK+ KNGE+P EHSP++SD MACNSP SPA+W+ S
Sbjct: 169 TQTQVKIWFQNRRSKFKKLYKNGEVPLEHSPNNSDSMACNSPPSPALWDTSSHSTPAPAR 228
Query: 237 PHAHPPTSNQSPASSYLEN-SASWYTS---AASSINSHLPPPGSLQH 279
PP S + SYL++ + SWY + + + P P +L H
Sbjct: 229 SQLPPPLP-YSASPSYLDDPTNSWYHAQNLSGPHLQQQPPQPATLHH 274
>gi|4758168 distal-less homeobox 2 [Homo sapiens]
Length = 328
Score = 227 bits (578), Expect = 1e-59
Identities = 148/312 (47%), Positives = 174/312 (55%), Gaps = 42/312 (13%)
Query: 1 MTGVFDRRVPSIRSGDFQAPF--------------------QTSAAMHHPSQESPTLPES 40
MTGVFD V + S A +S+++H P QESPTLP S
Sbjct: 1 MTGVFDSLVADMHSTQIAASSTYHQHQQPPSGGGAGPGGNSSSSSSLHKP-QESPTLPVS 59
Query: 41 SATDSDYYS----PTGGAPHGYCSPTSASYGKALNPYQYQYHGVNGSAGSYPAKAYADYS 96
+ATDS YY+ P GG G S + YQYQ G+N Y AK+ D
Sbjct: 60 TATDSSYYTNQQHPAGGGGGG------GSPYAHMGSYQYQASGLNNVP--YSAKSSYDLG 111
Query: 97 YASSYHQYGGAYNRVPSATNQPEKEVTEPEVRMVNGKPKKVRKPRTIYSSFQLAALQRRF 156
Y ++Y Y A N+PEKE EPE+R+VNGKPKKVRKPRTIYSSFQLAALQRRF
Sbjct: 112 YTAAYTSYAPYGTSSSPANNEPEKEDLEPEIRIVNGKPKKVRKPRTIYSSFQLAALQRRF 171
Query: 157 QKTQYLALPERAELAASLGLTQTQVKIWFQNKRSKIKKIMKNGEMPPEHSPSSSDPMACN 216
QKTQYLALPERAELAASLGLTQTQVKIWFQN+RSK KK+ K+GE+P E P +S C
Sbjct: 172 QKTQYLALPERAELAASLGLTQTQVKIWFQNRRSKFKKMWKSGEIPSEQHPGASASPPCA 231
Query: 217 SP--QSPAVWE---PQ---GSSRSLSHHPHAHPPTSNQSPASSYLENSASWYTSAASSIN 268
SP +PA W+ PQ G S A S+ S A+S + WY + S
Sbjct: 232 SPPVSAPASWDFGVPQRMAGGGGPGSGGSGAGSSGSSPSSAASAFLGNYPWYHQTSGSA- 290
Query: 269 SHLPPPGSLQHP 280
SHL L HP
Sbjct: 291 SHLQATAPLLHP 302
>gi|82659115 distal-less homeobox 6 [Homo sapiens]
Length = 265
Score = 158 bits (400), Expect = 5e-39
Identities = 99/240 (41%), Positives = 130/240 (54%), Gaps = 25/240 (10%)
Query: 25 AAMHHPSQESPTLPESSATDSDYYSPTGGAPHGYCSPTSASYGKALNPYQYQYHGVNGSA 84
A H+P + ++A S ++ HG SP ++ G + N + S
Sbjct: 37 AGAHYPLHCLHSAAAAAAAGSHHHHHHQHHHHG--SPYASGGGNSYN---------HRSL 85
Query: 85 GSYPAKAYADYS-YASSYHQYGGAYNRVPSATNQPEKEVTEPEVRMVNGKPKKVRKPRTI 143
+YP +++ +S Y SYH A T+Q + V E NGK KK+RKPRTI
Sbjct: 86 AAYPYMSHSQHSPYLQSYHNSSAAAQTRGDDTDQQKTTVIENGEIRFNGKGKKIRKPRTI 145
Query: 144 YSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIWFQNKRSKIKKIMKNGEMPP 203
YSS QL AL RFQ+TQYLALPERAELAASLGLTQTQVKIWFQNKRSK KK++K G P
Sbjct: 146 YSSLQLQALNHRFQQTQYLALPERAELAASLGLTQTQVKIWFQNKRSKFKKLLKQGSNPH 205
Query: 204 EHSP-SSSDPMACNSPQSPAVWEPQGSSRSLSHHPHAHPPTSNQSPASSYLENSASWYTS 262
E P S ++ SP P VW+ S++ +S P +SY+ + WY+S
Sbjct: 206 ESDPLQGSAALSPRSPALPPVWDVSASAKGVS------------MPPNSYMPGYSHWYSS 253
>gi|64225290 distal-less homeobox 1 isoform 1 [Homo sapiens]
Length = 255
Score = 150 bits (379), Expect = 1e-36
Identities = 108/258 (41%), Positives = 130/258 (50%), Gaps = 48/258 (18%)
Query: 36 TLPES--SATDSDYYSPTGGAPHGYCSPTSASYGKALNPYQYQYHGVNGSAGSYPAKAYA 93
T+PES S G P+ SP+ S+G Y H ++ + S P AY+
Sbjct: 5 TMPESLNSPVSGKAVFMEFGPPNQQMSPSPMSHG------HYSMHCLHSAGHSQPDGAYS 58
Query: 94 DYS---------------------YASSYHQYGG----AYNRV--PSATNQPEKEVTEPE 126
S Y SS Y G A +R+ P A ++ V E
Sbjct: 59 SASSFSRPLGYPYVNSVSSHASSPYISSVQSYPGSASLAQSRLEDPGADSEKSTVVEGGE 118
Query: 127 VRMVNGKPKKVRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIWFQ 186
VR NGK KK+RKPRTIYSS QL AL RRFQ+TQYLALPERAELAASLGLTQTQVKIWFQ
Sbjct: 119 VRF-NGKGKKIRKPRTIYSSLQLQALNRRFQQTQYLALPERAELAASLGLTQTQVKIWFQ 177
Query: 187 NKRSKIKKIMKNGEMPPEHSP-SSSDPMACNSPQSPAVWEPQGSSRSLSHHPHAHPPTSN 245
NKRSK KK+MK G E S ++ ++ SP P W P SS +
Sbjct: 178 NKRSKFKKLMKQGGAALEGSALANGRALSAGSPPVPPGWNPNSSSGK-----------GS 226
Query: 246 QSPASSYLENSASWYTSA 263
A SY+ + SWY SA
Sbjct: 227 GGNAGSYIPSYTSWYPSA 244
>gi|20143962 distal-less homeobox 4 isoform a [Homo sapiens]
Length = 240
Score = 117 bits (294), Expect = 9e-27
Identities = 67/145 (46%), Positives = 83/145 (57%), Gaps = 16/145 (11%)
Query: 124 EPEVRMVNGKPKKVRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKI 183
EP R KK+RKPRTIYSS QL L +RFQ TQYLALPERA+LAA LGLTQTQVKI
Sbjct: 104 EPSERRPQAPAKKLRKPRTIYSSLQLQHLNQRFQHTQYLALPERAQLAAQLGLTQTQVKI 163
Query: 184 WFQNKRSKIKKIMKNGEMPPEHS-PSSSDPMACNSPQSPAVWEPQGSSRSLSHHPHAHPP 242
WFQNKRSK KK++K E P + ++ SP P++W+ P
Sbjct: 164 WFQNKRSKYKKLLKQNSGGQEGDFPGRTFSVSPCSPPLPSLWD---------------LP 208
Query: 243 TSNQSPASSYLENSASWYTSAASSI 267
+ P S Y + +WY +S +
Sbjct: 209 KAGTLPTSGYGNSFGAWYQHHSSDV 233
>gi|20143960 distal-less homeobox 4 isoform b [Homo sapiens]
Length = 168
Score = 117 bits (294), Expect = 9e-27
Identities = 67/145 (46%), Positives = 83/145 (57%), Gaps = 16/145 (11%)
Query: 124 EPEVRMVNGKPKKVRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKI 183
EP R KK+RKPRTIYSS QL L +RFQ TQYLALPERA+LAA LGLTQTQVKI
Sbjct: 32 EPSERRPQAPAKKLRKPRTIYSSLQLQHLNQRFQHTQYLALPERAQLAAQLGLTQTQVKI 91
Query: 184 WFQNKRSKIKKIMKNGEMPPEHS-PSSSDPMACNSPQSPAVWEPQGSSRSLSHHPHAHPP 242
WFQNKRSK KK++K E P + ++ SP P++W+ P
Sbjct: 92 WFQNKRSKYKKLLKQNSGGQEGDFPGRTFSVSPCSPPLPSLWD---------------LP 136
Query: 243 TSNQSPASSYLENSASWYTSAASSI 267
+ P S Y + +WY +S +
Sbjct: 137 KAGTLPTSGYGNSFGAWYQHHSSDV 161
>gi|27886557 msh homeobox 2 [Homo sapiens]
Length = 267
Score = 95.5 bits (236), Expect = 5e-20
Identities = 65/194 (33%), Positives = 98/194 (50%), Gaps = 7/194 (3%)
Query: 6 DRRVPSIRSGDFQAPFQTSAAMHHPSQESPTLPES-SATDSDYYSPTGGAPHGYCSPTSA 64
D P++ +G P A + +LP S A SD P +P SA
Sbjct: 14 DEEGPAVVAGPGPGPGGAEGAAEERRVKVSSLPFSVEALMSDKKPPKEASP---LPAESA 70
Query: 65 SYGKALNPYQYQYHGVNGSAGSYP-AKAYADYSYASSYHQYGGAYNRVPSATNQPEKEVT 123
S G L P HG + P K + S S + G A+ + P + P + ++
Sbjct: 71 SAGATLRPLLLSGHGAREAHSPGPLVKPFETASVKSENSEDGAAWMQEPGRYSPPPRHMS 130
Query: 124 EPEVRMVNGKPKKVRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKI 183
+ K K RKPRT +++ QL AL+R+F++ QYL++ ERAE ++SL LT+TQVKI
Sbjct: 131 PTTCTL--RKHKTNRKPRTPFTTSQLLALERKFRQKQYLSIAERAEFSSSLNLTETQVKI 188
Query: 184 WFQNKRSKIKKIMK 197
WFQN+R+K K++ +
Sbjct: 189 WFQNRRAKAKRLQE 202
>gi|6633798 BarH-like homeobox 2 [Homo sapiens]
Length = 279
Score = 81.3 bits (199), Expect = 9e-16
Identities = 39/82 (47%), Positives = 56/82 (68%), Gaps = 1/82 (1%)
Query: 123 TEPEVRMVNGKPKKVRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVK 182
+E E + KK R+ RTI++ QL L+++FQK +YL+ P+R +LA SLGLTQ QVK
Sbjct: 119 SESETEQPTPRQKKPRRSRTIFTELQLMGLEKKFQKQKYLSTPDRLDLAQSLGLTQLQVK 178
Query: 183 IWFQNKRSKIKK-IMKNGEMPP 203
W+QN+R K KK ++K G+ P
Sbjct: 179 TWYQNRRMKWKKMVLKGGQEAP 200
>gi|147901462 brain specific homeobox [Homo sapiens]
Length = 233
Score = 80.5 bits (197), Expect = 2e-15
Identities = 44/105 (41%), Positives = 65/105 (61%), Gaps = 10/105 (9%)
Query: 125 PEVRMVNGKPKKVRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIW 184
P+ + GK + RK RT++S QL+ L++RF+ +YL+ PER ELA +L L++TQVK W
Sbjct: 98 PQHAELPGKHCRRRKARTVFSDSQLSGLEKRFEIQRYLSTPERVELATALSLSETQVKTW 157
Query: 185 FQNKRSKIKKIMKNGEMPPEHSPSSSDPMACNSPQSPAVWEPQGS 229
FQN+R K KK ++ S +P A + P+SP P+GS
Sbjct: 158 FQNRRMKHKKQLRK---------SQDEPKAPDGPESPE-GSPRGS 192
>gi|118582284 msh homeobox 1 [Homo sapiens]
Length = 303
Score = 80.1 bits (196), Expect = 2e-15
Identities = 39/86 (45%), Positives = 61/86 (70%), Gaps = 2/86 (2%)
Query: 112 PSATNQPEKEVTEPEVRMVNGKPKKVRKPRTIYSSFQLAALQRRFQKTQYLALPERAELA 171
P + P + ++ P + K K RKPRT +++ QL AL+R+F++ QYL++ ERAE +
Sbjct: 149 PRFSPPPARRLSPPACTL--RKHKTNRKPRTPFTTAQLLALERKFRQKQYLSIAERAEFS 206
Query: 172 ASLGLTQTQVKIWFQNKRSKIKKIMK 197
+SL LT+TQVKIWFQN+R+K K++ +
Sbjct: 207 SSLSLTETQVKIWFQNRRAKAKRLQE 232
>gi|24497526 homeobox B1 [Homo sapiens]
Length = 301
Score = 79.0 bits (193), Expect = 5e-15
Identities = 73/227 (32%), Positives = 101/227 (44%), Gaps = 33/227 (14%)
Query: 20 PFQTSAAMHHPSQESPTLPESSATDSDYYSPTGGAPH--GYCSPTSASYGKALNPYQYQY 77
PF +SA PS +P S S YY P G + GY P+S YG L Y
Sbjct: 75 PFPSSA----PSGYAPAACSPSYGPSQYY-PLGQSEGDGGYFHPSS--YGAQLGGLSDGY 127
Query: 78 HGVNGSAGSYPAK--AYADYSYASSYHQYGGAYNR-----VPSATNQPEKEVTE-PEVRM 129
G YP + Y + AS Y + PS N P + +V+
Sbjct: 128 GAGGAGPGPYPPQHPPYGNEQTASFAPAYADLLSEDKETPCPSEPNTPTARTFDWMKVKR 187
Query: 130 VNGKPKKVRKP--------RTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQV 181
K KV +P RT +++ QL L++ F +YL+ R E+AA+L L +TQV
Sbjct: 188 NPPKTAKVSEPGLGSPSGLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQV 247
Query: 182 KIWFQNKRSKIKK-IMKNGEMPP-------EHSPSSSDPMACNSPQS 220
KIWFQN+R K KK + G +PP E + +SD C SP++
Sbjct: 248 KIWFQNRRMKQKKREREEGRVPPAPPGCPKEAAGDASDQSTCTSPEA 294
>gi|148746211 NK2 transcription factor related, locus 3 [Homo
sapiens]
Length = 364
Score = 78.6 bits (192), Expect = 6e-15
Identities = 52/146 (35%), Positives = 74/146 (50%), Gaps = 20/146 (13%)
Query: 133 KPKKVRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIWFQNKRSKI 192
KP+ RKPR ++S Q+ L+RRF++ +YL+ PER LA+SL LT TQVKIWFQN+R K
Sbjct: 144 KPRSRRKPRVLFSQAQVFELERRFKQQRYLSAPEREHLASSLKLTSTQVKIWFQNRRYKC 203
Query: 193 K-----KIMKNGEMPPEHSPSS-------SDPMACNSPQSPAVWEPQGSSRSLSHHPHAH 240
K K ++ G P P D C +P + A P S +
Sbjct: 204 KRQRQDKSLELGAHAPPPPPRRVAVPVLVRDGKPCVTPSAQAYGAPYSVGASAYSY---- 259
Query: 241 PPTSNQSPASSYLENSASWYTSAASS 266
N PA Y ++A+ +AA++
Sbjct: 260 ----NSFPAYGYGNSAAAAAAAAAAA 281
>gi|153218470 BarH-like homeobox 1 [Homo sapiens]
Length = 254
Score = 77.4 bits (189), Expect = 1e-14
Identities = 35/67 (52%), Positives = 50/67 (74%)
Query: 133 KPKKVRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIWFQNKRSKI 192
K KK R+ RT+++ QL L++RF+K +YL+ P+R +LA SLGL+Q QVK W+QN+R K
Sbjct: 138 KAKKGRRSRTVFTELQLMGLEKRFEKQKYLSTPDRIDLAESLGLSQLQVKTWYQNRRMKW 197
Query: 193 KKIMKNG 199
KKI+ G
Sbjct: 198 KKIVLQG 204
>gi|116174748 developing brain homeobox 2 [Homo sapiens]
Length = 339
Score = 77.0 bits (188), Expect = 2e-14
Identities = 54/172 (31%), Positives = 86/172 (50%), Gaps = 24/172 (13%)
Query: 105 GGAYNRVPSATNQPEKEVTEPEVRM-VNGKPKKVRKPRTIYSSFQLAALQRRFQKTQYLA 163
GG+ R S+T P +E P + N K ++ R ++S Q AL++ FQK +Y++
Sbjct: 153 GGSCRRPASSTAFPREESMLPLLTQDSNSKARRGILRRAVFSEDQRKALEKMFQKQKYIS 212
Query: 164 LPERAELAASLGLTQTQVKIWFQNKR-----SKIKKIMKN---GEMPPEHSPSSSDPMAC 215
+R +LA +LGL ++QVKIWFQN+R SK K+++ N E+ + P S +
Sbjct: 213 KTDRKKLAINLGLKESQVKIWFQNRRMKWRNSKEKEVLSNRCIQEVGLQEDPLSRSALGF 272
Query: 216 NSPQSPAVWE--------------PQGSSRSLSHHPHAHPPTSNQSPASSYL 253
SP P++W+ P+ S R + A PP +N + YL
Sbjct: 273 PSP-CPSIWDVPQQHSSPRWRENSPEPSERLIQESSGAPPPEANSLQGALYL 323
>gi|5031761 homeobox A1 isoform a [Homo sapiens]
Length = 335
Score = 75.5 bits (184), Expect = 5e-14
Identities = 76/254 (29%), Positives = 104/254 (40%), Gaps = 43/254 (16%)
Query: 19 APFQTSAAMHHPSQESPTLPE-SSATDSDYYSP---------TGGAPHGYCSPTSASYGK 68
A +QTS + S P S S YSP +GG P C+P S
Sbjct: 78 ATYQTSGNLGVSYSHSSCGPSYGSQNFSAPYSPYALNQEADVSGGYPQ--CAPAVYSGNL 135
Query: 69 ALNPYQYQYHGVNGSAGSYPAKAYADYSYASSYHQYGGA-YNRVPS--------ATNQPE 119
+ Q+ +H + G+ + Y +SY + A YN S A P
Sbjct: 136 SSPMVQHHHHHQGYAGGAVGSPQYIHHSYGQEHQSLALATYNNSLSPLHASHQEACRSPA 195
Query: 120 KEVTEP----EVRMVNGKPKKVRKP------------RTIYSSFQLAALQRRFQKTQYLA 163
E + P + V P K K RT +++ QL L++ F +YL
Sbjct: 196 SETSSPAQTFDWMKVKRNPPKTGKVGEYGYLGQPNAVRTNFTTKQLTELEKEFHFNKYLT 255
Query: 164 LPERAELAASLGLTQTQVKIWFQNKRSKIKKIMKNGEMP-----PEHSPSSSDPMACNSP 218
R E+AASL L +TQVKIWFQN+R K KK K G +P P + ++ + S
Sbjct: 256 RARRVEIAASLQLNETQVKIWFQNRRMKQKKREKEGLLPISPATPPGNDEKAEESSEKSS 315
Query: 219 QSPAVWEPQGSSRS 232
SP V P GSS S
Sbjct: 316 SSPCVPSP-GSSTS 328
>gi|210147470 NK2 transcription factor related, locus 6 [Homo
sapiens]
Length = 219
Score = 74.3 bits (181), Expect = 1e-13
Identities = 34/62 (54%), Positives = 48/62 (77%)
Query: 133 KPKKVRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIWFQNKRSKI 192
K ++ RKPR ++S Q+ AL+RRF++ +YL+ PER LA++L LT TQVKIWFQN+R K
Sbjct: 46 KARQRRKPRVLFSQAQVLALERRFKQQRYLSAPEREHLASALQLTSTQVKIWFQNRRYKC 105
Query: 193 KK 194
K+
Sbjct: 106 KR 107
>gi|24497589 aristaless related homeobox [Homo sapiens]
Length = 562
Score = 74.3 bits (181), Expect = 1e-13
Identities = 49/146 (33%), Positives = 72/146 (49%), Gaps = 17/146 (11%)
Query: 135 KKVRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIWFQNKRSKIKK 194
+K R+ RT ++S+QL L+R FQKT Y + R ELA L LT+ +V++WFQN+R+K +K
Sbjct: 326 RKQRRYRTTFTSYQLEELERAFQKTHYPDVFTREELAMRLDLTEARVQVWFQNRRAKWRK 385
Query: 195 IMKNGEMPPEHSPSSSDPMACNSPQSPAVWEPQGSSRSLSHHPHAHPPTSNQSPASSYLE 254
K G P++ P SP + S P HP + A++
Sbjct: 386 REKAGAQTHPPGLPFPGPLSATHPLSPYL--------DASPFPPHHPALDSAWTAAA--- 434
Query: 255 NSASWYTSAASSINSHLPPPGSLQHP 280
+AA++ S PPPGS P
Sbjct: 435 ------AAAAAAFPSLPPPPGSASLP 454
>gi|24497547 homeobox C9 [Homo sapiens]
Length = 260
Score = 73.6 bits (179), Expect = 2e-13
Identities = 57/197 (28%), Positives = 84/197 (42%), Gaps = 12/197 (6%)
Query: 10 PSIRSGDFQAPFQTSAAMHHPSQESPTLPESSATDSDYYSPTGGAPHGYCSPTSASYGKA 69
P++ S + S+ ++HP P L + + P GA P + A
Sbjct: 59 PAVFSTSWAPVPSQSSVVYHPYGPQPHLGADTRYMRTWLEPLSGAVSFPSFPAGGRH-YA 117
Query: 70 LNPYQYQYHGVNGSAGSYPAKAYADYSYASSYHQYGGAYNRVPS--------ATNQPEKE 121
L P Y G G ++Y DY Y S A +PS + ++ EK
Sbjct: 118 LKPDAYP--GRRADCGPGEGRSYPDYMYGSPGELRDRAPQTLPSPEADALAGSKHKEEKA 175
Query: 122 VTEPEVRMVNG-KPKKVRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQ 180
+P + N + RK R Y+ +Q L++ F YL R E+A L LT+ Q
Sbjct: 176 DLDPSNPVANWIHARSTRKKRCPYTKYQTLELEKEFLFNMYLTRDRRYEVARVLNLTERQ 235
Query: 181 VKIWFQNKRSKIKKIMK 197
VKIWFQN+R K+KK+ K
Sbjct: 236 VKIWFQNRRMKMKKMNK 252
>gi|4502365 NK3 homeobox 2 [Homo sapiens]
Length = 333
Score = 73.2 bits (178), Expect = 3e-13
Identities = 42/90 (46%), Positives = 55/90 (61%), Gaps = 8/90 (8%)
Query: 105 GGAYNRVPSATNQPEKEVTEPEVRMVNGKPKKVRKPRTIYSSFQLAALQRRFQKTQYLAL 164
GG P+ + E+E P KP+K R R +S Q+ L+RRF +YL+
Sbjct: 182 GGGGGSGPAGVAEEEEEPAAP-------KPRKKRS-RAAFSHAQVFELERRFNHQRYLSG 233
Query: 165 PERAELAASLGLTQTQVKIWFQNKRSKIKK 194
PERA+LAASL LT+TQVKIWFQN+R K K+
Sbjct: 234 PERADLAASLKLTETQVKIWFQNRRYKTKR 263
>gi|24497515 homeobox A3 isoform b [Homo sapiens]
Length = 285
Score = 72.4 bits (176), Expect = 4e-13
Identities = 53/153 (34%), Positives = 72/153 (47%), Gaps = 13/153 (8%)
Query: 138 RKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIWFQNKRSKIKKIMK 197
++ RT Y+S QL L++ F +YL P R E+A L LT+ Q+KIWFQN+R K KK K
Sbjct: 34 KRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQK 93
Query: 198 NGEMPPEHSPSSSDPMACNSPQSPAVWEPQGSSRSL----SHHPHAHPPTSNQSPASSYL 253
M SS SP P S SL + P + PP S + P +Y
Sbjct: 94 GKGM----LTSSGGQSPSRSPVPPGAGGYLNSMHSLVNSVPYEPQSPPPFS-KPPQGTYG 148
Query: 254 ENSASWYTSAASSINSHLPPPGSLQHPLALASG 286
AS+ +S+ S PPP + A +G
Sbjct: 149 LPPASY----PASLPSCAPPPPPQKRYTAAGAG 177
>gi|24497513 homeobox A3 isoform a [Homo sapiens]
Length = 443
Score = 72.4 bits (176), Expect = 4e-13
Identities = 53/153 (34%), Positives = 72/153 (47%), Gaps = 13/153 (8%)
Query: 138 RKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIWFQNKRSKIKKIMK 197
++ RT Y+S QL L++ F +YL P R E+A L LT+ Q+KIWFQN+R K KK K
Sbjct: 192 KRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQK 251
Query: 198 NGEMPPEHSPSSSDPMACNSPQSPAVWEPQGSSRSL----SHHPHAHPPTSNQSPASSYL 253
M SS SP P S SL + P + PP S + P +Y
Sbjct: 252 GKGM----LTSSGGQSPSRSPVPPGAGGYLNSMHSLVNSVPYEPQSPPPFS-KPPQGTYG 306
Query: 254 ENSASWYTSAASSINSHLPPPGSLQHPLALASG 286
AS+ +S+ S PPP + A +G
Sbjct: 307 LPPASY----PASLPSCAPPPPPQKRYTAAGAG 335
Score = 29.3 bits (64), Expect = 4.2
Identities = 20/71 (28%), Positives = 29/71 (40%), Gaps = 3/71 (4%)
Query: 202 PPEHSPSSSDPMACNSPQS---PAVWEPQGSSRSLSHHPHAHPPTSNQSPASSYLENSAS 258
PP PS +P P PA PQ + + + P A PP S+ SP + N
Sbjct: 78 PPSQPPSLGEPPLHPPPPQAAPPAPQPPQPAPQPPAPTPAAPPPPSSASPPQNASNNPTP 137
Query: 259 WYTSAASSINS 269
+ + +NS
Sbjct: 138 ANAAKSPLLNS 148
>gi|13562112 homeobox A3 isoform a [Homo sapiens]
Length = 443
Score = 72.4 bits (176), Expect = 4e-13
Identities = 53/153 (34%), Positives = 72/153 (47%), Gaps = 13/153 (8%)
Query: 138 RKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIWFQNKRSKIKKIMK 197
++ RT Y+S QL L++ F +YL P R E+A L LT+ Q+KIWFQN+R K KK K
Sbjct: 192 KRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQK 251
Query: 198 NGEMPPEHSPSSSDPMACNSPQSPAVWEPQGSSRSL----SHHPHAHPPTSNQSPASSYL 253
M SS SP P S SL + P + PP S + P +Y
Sbjct: 252 GKGM----LTSSGGQSPSRSPVPPGAGGYLNSMHSLVNSVPYEPQSPPPFS-KPPQGTYG 306
Query: 254 ENSASWYTSAASSINSHLPPPGSLQHPLALASG 286
AS+ +S+ S PPP + A +G
Sbjct: 307 LPPASY----PASLPSCAPPPPPQKRYTAAGAG 335
Score = 29.3 bits (64), Expect = 4.2
Identities = 20/71 (28%), Positives = 29/71 (40%), Gaps = 3/71 (4%)
Query: 202 PPEHSPSSSDPMACNSPQS---PAVWEPQGSSRSLSHHPHAHPPTSNQSPASSYLENSAS 258
PP PS +P P PA PQ + + + P A PP S+ SP + N
Sbjct: 78 PPSQPPSLGEPPLHPPPPQAAPPAPQPPQPAPQPPAPTPAAPPPPSSASPPQNASNNPTP 137
Query: 259 WYTSAASSINS 269
+ + +NS
Sbjct: 138 ANAAKSPLLNS 148
>gi|4505401 NK2 transcription factor related, locus 2 [Homo sapiens]
Length = 273
Score = 72.4 bits (176), Expect = 4e-13
Identities = 54/154 (35%), Positives = 74/154 (48%), Gaps = 31/154 (20%)
Query: 66 YGKALNPY----------QYQYHGVNGSAGSYPAKAYADYSYASSYHQYGGAYNRVPSAT 115
Y + NPY QY HG+ +AG+ P Q + + PSA
Sbjct: 66 YDSSDNPYTRWLASTEGLQYSLHGL--AAGAPP--------------QDSSSKSPEPSAD 109
Query: 116 NQPEKEVTEPEVRMVNGKPKKVRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLG 175
P+ + P G K RK R ++S Q L+RRF++ +YL+ PER LA+ +
Sbjct: 110 ESPDNDKETPGG---GGDAGKKRKRRVLFSKAQTYELERRFRQQRYLSAPEREHLASLIR 166
Query: 176 LTQTQVKIWFQNKRSKIKKIM--KNGEMPPEHSP 207
LT TQVKIWFQN R K+K+ K E+ P SP
Sbjct: 167 LTPTQVKIWFQNHRYKMKRARAEKGMEVTPLPSP 200
>gi|14149728 BarH-like homeobox 1 [Homo sapiens]
Length = 327
Score = 72.4 bits (176), Expect = 4e-13
Identities = 68/205 (33%), Positives = 96/205 (46%), Gaps = 40/205 (19%)
Query: 55 PHGYCSPTSASYGKALNPYQYQYHGVNGSAGSYPAKAYADY--------SYASSYHQYGG 106
P C+P S+S G+ P G AKA D+ S ASS +Y
Sbjct: 107 PLAACAPYSSS-GQPAAPEP---------GGRLAAKAAEDFRDKLDKSGSNASSDSEY-- 154
Query: 107 AYNRVPSATNQPEKEVTE----PEVRMVNGKPKKVRKPRTIYSSFQLAALQRRFQKTQYL 162
+ ++E++ P VR+ KK RK RT ++ QLA L+R F++ +YL
Sbjct: 155 ------KVKEEGDREISSSRDSPPVRL-----KKPRKARTAFTDHQLAQLERSFERQKYL 203
Query: 163 ALPERAELAASLGLTQTQVKIWFQNKRSKIKKIMKNG-EMPPEHSPSSS----DPMACNS 217
++ +R ELAASL LT TQVK W+QN+R+K K+ G E+ E S+ P
Sbjct: 204 SVQDRMELAASLNLTDTQVKTWYQNRRTKWKRQTAVGLELLAEAGNYSALQRMFPSPYFY 263
Query: 218 PQSPAVWEPQGSSRSLSHHPHAHPP 242
PQS G++ L P A PP
Sbjct: 264 PQSLVSNLDPGAALYLYRGPSAPPP 288
>gi|226437602 NK1 homeobox 2 [Homo sapiens]
Length = 310
Score = 71.6 bits (174), Expect = 7e-13
Identities = 39/90 (43%), Positives = 53/90 (58%), Gaps = 5/90 (5%)
Query: 105 GGAYNRVPSATNQPEKEVTEPEVRMVNGKPKKVRKPRTIYSSFQLAALQRRFQKTQYLAL 164
GG P + P P R + K R+ RT ++ QL AL+ +F+ T+YL++
Sbjct: 136 GGPVRSPPGSPGSPR-----PRRRRLEPNCAKPRRARTAFTYEQLVALENKFRATRYLSV 190
Query: 165 PERAELAASLGLTQTQVKIWFQNKRSKIKK 194
ER LA SL LT+TQVKIWFQN+R+K KK
Sbjct: 191 CERLNLALSLSLTETQVKIWFQNRRTKWKK 220
>gi|239755439 PREDICTED: NK1 homeobox 2 [Homo sapiens]
Length = 332
Score = 71.6 bits (174), Expect = 7e-13
Identities = 39/90 (43%), Positives = 53/90 (58%), Gaps = 5/90 (5%)
Query: 105 GGAYNRVPSATNQPEKEVTEPEVRMVNGKPKKVRKPRTIYSSFQLAALQRRFQKTQYLAL 164
GG P + P P R + K R+ RT ++ QL AL+ +F+ T+YL++
Sbjct: 158 GGPVRSPPGSPGSPR-----PRRRRLEPNCAKPRRARTAFTYEQLVALENKFRATRYLSV 212
Query: 165 PERAELAASLGLTQTQVKIWFQNKRSKIKK 194
ER LA SL LT+TQVKIWFQN+R+K KK
Sbjct: 213 CERLNLALSLSLTETQVKIWFQNRRTKWKK 242
>gi|239749920 PREDICTED: NK1 homeobox 2 [Homo sapiens]
Length = 332
Score = 71.6 bits (174), Expect = 7e-13
Identities = 39/90 (43%), Positives = 53/90 (58%), Gaps = 5/90 (5%)
Query: 105 GGAYNRVPSATNQPEKEVTEPEVRMVNGKPKKVRKPRTIYSSFQLAALQRRFQKTQYLAL 164
GG P + P P R + K R+ RT ++ QL AL+ +F+ T+YL++
Sbjct: 158 GGPVRSPPGSPGSPR-----PRRRRLEPNCAKPRRARTAFTYEQLVALENKFRATRYLSV 212
Query: 165 PERAELAASLGLTQTQVKIWFQNKRSKIKK 194
ER LA SL LT+TQVKIWFQN+R+K KK
Sbjct: 213 CERLNLALSLSLTETQVKIWFQNRRTKWKK 242
>gi|239744223 PREDICTED: NK1 homeobox 2 [Homo sapiens]
Length = 332
Score = 71.6 bits (174), Expect = 7e-13
Identities = 39/90 (43%), Positives = 53/90 (58%), Gaps = 5/90 (5%)
Query: 105 GGAYNRVPSATNQPEKEVTEPEVRMVNGKPKKVRKPRTIYSSFQLAALQRRFQKTQYLAL 164
GG P + P P R + K R+ RT ++ QL AL+ +F+ T+YL++
Sbjct: 158 GGPVRSPPGSPGSPR-----PRRRRLEPNCAKPRRARTAFTYEQLVALENKFRATRYLSV 212
Query: 165 PERAELAASLGLTQTQVKIWFQNKRSKIKK 194
ER LA SL LT+TQVKIWFQN+R+K KK
Sbjct: 213 CERLNLALSLSLTETQVKIWFQNRRTKWKK 242
>gi|89257348 homeo box HB9 [Homo sapiens]
Length = 401
Score = 71.6 bits (174), Expect = 7e-13
Identities = 58/175 (33%), Positives = 83/175 (47%), Gaps = 28/175 (16%)
Query: 52 GGAPHGYCSPTSAS-YGKALNPYQYQYHGVNGSAGSYPAKAYADYSYASSYHQYGGAYNR 110
GGA G P A+ YG + Y AG +PA +Y SY Q GA+
Sbjct: 144 GGAQGGAGLPAQAALYGHPVYGYSAAAAAA-ALAGQHPALSY-------SYPQVQGAHPA 195
Query: 111 VPS-------ATNQPEKEVTEPEVRMVNGKPK------------KVRKPRTIYSSFQLAA 151
P+ T Q ++ + M+ K K R+PRT ++S QL
Sbjct: 196 HPADPIKLGAGTFQLDQWLRASTAGMILPKMPDFNSQAQSNLLGKCRRPRTAFTSQQLLE 255
Query: 152 LQRRFQKTQYLALPERAELAASLGLTQTQVKIWFQNKRSKIKKIMKNGEMPPEHS 206
L+ +F+ +YL+ P+R E+A SL LT+TQVKIWFQN+R K K+ K E + +
Sbjct: 256 LEHQFKLNKYLSRPKRFEVATSLMLTETQVKIWFQNRRMKWKRSKKAKEQAAQEA 310
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.309 0.124 0.371
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,546,710
Number of Sequences: 37866
Number of extensions: 706266
Number of successful extensions: 3734
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 324
Number of HSP's successfully gapped in prelim test: 158
Number of HSP's that attempted gapping in prelim test: 3073
Number of HSP's gapped (non-prelim): 787
length of query: 289
length of database: 18,247,518
effective HSP length: 101
effective length of query: 188
effective length of database: 14,423,052
effective search space: 2711533776
effective search space used: 2711533776
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.