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Search of human proteins with 48717495
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|48717495 chondroitin polymerizing factor 2 [Homo sapiens]
(772 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|48717495 chondroitin polymerizing factor 2 [Homo sapiens] 1559 0.0
gi|27545323 chondroitin polymerizing factor [Homo sapiens] 848 0.0
gi|31542309 chondroitin sulfate synthase 1 [Homo sapiens] 172 8e-43
gi|74271903 chondroitin sulfate synthase 3 [Homo sapiens] 172 1e-42
gi|9910144 core 1 synthase, glycoprotein-N-acetylgalactosamine 3... 65 2e-10
gi|24429592 chondroitin sulfate N-acetylgalactosaminyltransferas... 54 7e-07
gi|194473684 chondroitin sulfate N-acetylgalactosaminyltransfera... 49 2e-05
gi|194473683 chondroitin sulfate N-acetylgalactosaminyltransfera... 49 2e-05
gi|74271816 radical fringe [Homo sapiens] 46 1e-04
gi|148612882 cat eye syndrome chromosome region, candidate 2 [Ho... 40 0.008
gi|115334682 SNAP25-interacting protein [Homo sapiens] 39 0.014
gi|98986321 gliomedin [Homo sapiens] 39 0.024
gi|23510368 homeobox D11 [Homo sapiens] 38 0.031
gi|56606142 complement component 1, q subcomponent-like 4 [Homo ... 37 0.091
gi|21536461 O-fucosylpeptide 3-beta-N-acetylglucosaminyltransfer... 37 0.091
gi|191252785 centrobin, centrosomal BRCA2 interacting protein is... 36 0.12
gi|80861396 centrobin, centrosomal BRCA2 interacting protein iso... 36 0.12
gi|16950645 neurotrophic factor artemin isoform 2 [Homo sapiens] 36 0.15
gi|209954781 neurotrophic factor artemin isoform 1 precursor [Ho... 36 0.15
gi|209954778 neurotrophic factor artemin isoform 3 precursor [Ho... 36 0.15
gi|209954776 neurotrophic factor artemin isoform 1 precursor [Ho... 36 0.15
gi|209977029 neurotrophic factor artemin isoform 3 precursor [Ho... 36 0.15
gi|5032069 splicing factor 3b, subunit 4 [Homo sapiens] 35 0.20
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom... 35 0.26
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom... 35 0.26
gi|18375673 regulator of nonsense transcripts 1 [Homo sapiens] 35 0.26
gi|15890086 type IV collagen alpha 5 isoform 2 precursor [Homo s... 35 0.26
gi|4502955 type IV collagen alpha 5 isoform 1 precursor [Homo sa... 35 0.26
gi|15890088 type IV collagen alpha 5 isoform 3 precursor [Homo s... 35 0.26
gi|190014636 hypothetical protein LOC286262 isoform 2 [Homo sapi... 35 0.26
>gi|48717495 chondroitin polymerizing factor 2 [Homo sapiens]
Length = 772
Score = 1559 bits (4037), Expect = 0.0
Identities = 772/772 (100%), Positives = 772/772 (100%)
Query: 1 MRLSSLLALLRPALPLILGLSLGCSLSLLRVSWIQGEGEDPCVEAVGERGGPQNPDSRAR 60
MRLSSLLALLRPALPLILGLSLGCSLSLLRVSWIQGEGEDPCVEAVGERGGPQNPDSRAR
Sbjct: 1 MRLSSLLALLRPALPLILGLSLGCSLSLLRVSWIQGEGEDPCVEAVGERGGPQNPDSRAR 60
Query: 61 LDQSDEDFKPRIVPYYRDPNKPYKKVLRTRYIQTELGSRERLLVAVLTSRATLSTLAVAV 120
LDQSDEDFKPRIVPYYRDPNKPYKKVLRTRYIQTELGSRERLLVAVLTSRATLSTLAVAV
Sbjct: 61 LDQSDEDFKPRIVPYYRDPNKPYKKVLRTRYIQTELGSRERLLVAVLTSRATLSTLAVAV 120
Query: 121 NRTVAHHFPRLLYFTGQRGARAPAGMQVVSHGDERPAWLMSETLRHLHTHFGADYDWFFI 180
NRTVAHHFPRLLYFTGQRGARAPAGMQVVSHGDERPAWLMSETLRHLHTHFGADYDWFFI
Sbjct: 121 NRTVAHHFPRLLYFTGQRGARAPAGMQVVSHGDERPAWLMSETLRHLHTHFGADYDWFFI 180
Query: 181 MQDDTYVQAPRLAALAGHLSINQDLYLGRAEEFIGAGEQARYCHGGFGYLLSRSLLLRLR 240
MQDDTYVQAPRLAALAGHLSINQDLYLGRAEEFIGAGEQARYCHGGFGYLLSRSLLLRLR
Sbjct: 181 MQDDTYVQAPRLAALAGHLSINQDLYLGRAEEFIGAGEQARYCHGGFGYLLSRSLLLRLR 240
Query: 241 PHLDGCRGDILSARPDEWLGRCLIDSLGVGCVSQHQGQQYRSFELAKNRDPEKEGSSAFL 300
PHLDGCRGDILSARPDEWLGRCLIDSLGVGCVSQHQGQQYRSFELAKNRDPEKEGSSAFL
Sbjct: 241 PHLDGCRGDILSARPDEWLGRCLIDSLGVGCVSQHQGQQYRSFELAKNRDPEKEGSSAFL 300
Query: 301 SAFAVHPVSEGTLMYRLHKRFSALELERAYSEIEQLQAQIRNLTVLTPEGEAGLSWPVGL 360
SAFAVHPVSEGTLMYRLHKRFSALELERAYSEIEQLQAQIRNLTVLTPEGEAGLSWPVGL
Sbjct: 301 SAFAVHPVSEGTLMYRLHKRFSALELERAYSEIEQLQAQIRNLTVLTPEGEAGLSWPVGL 360
Query: 361 PAPFTPHSRFEVLGWDYFTEQHTFSCADGAPKCPLQGASRADVGDALETALEQLNRRYQP 420
PAPFTPHSRFEVLGWDYFTEQHTFSCADGAPKCPLQGASRADVGDALETALEQLNRRYQP
Sbjct: 361 PAPFTPHSRFEVLGWDYFTEQHTFSCADGAPKCPLQGASRADVGDALETALEQLNRRYQP 420
Query: 421 RLRFQKQRLLNGYRRFDPARGMEYTLDLLLECVTQRGHRRALARRVSLLRPLSRVEILPM 480
RLRFQKQRLLNGYRRFDPARGMEYTLDLLLECVTQRGHRRALARRVSLLRPLSRVEILPM
Sbjct: 421 RLRFQKQRLLNGYRRFDPARGMEYTLDLLLECVTQRGHRRALARRVSLLRPLSRVEILPM 480
Query: 481 PYVTEATRVQLVLPLLVAEAAAAPAFLEAFAANVLEPREHALLTLLLVYGPREGGRGAPD 540
PYVTEATRVQLVLPLLVAEAAAAPAFLEAFAANVLEPREHALLTLLLVYGPREGGRGAPD
Sbjct: 481 PYVTEATRVQLVLPLLVAEAAAAPAFLEAFAANVLEPREHALLTLLLVYGPREGGRGAPD 540
Query: 541 PFLGVKAAAAELERRYPGTRLAWLAVRAEAPSQVRLMDVVSKKHPVDTLFFLTTVWTRPG 600
PFLGVKAAAAELERRYPGTRLAWLAVRAEAPSQVRLMDVVSKKHPVDTLFFLTTVWTRPG
Sbjct: 541 PFLGVKAAAAELERRYPGTRLAWLAVRAEAPSQVRLMDVVSKKHPVDTLFFLTTVWTRPG 600
Query: 601 PEVLNRCRMNAISGWQAFFPVHFQEFNPALSPQRSPPGPPGAGPDPPSPPGADPSRGAPI 660
PEVLNRCRMNAISGWQAFFPVHFQEFNPALSPQRSPPGPPGAGPDPPSPPGADPSRGAPI
Sbjct: 601 PEVLNRCRMNAISGWQAFFPVHFQEFNPALSPQRSPPGPPGAGPDPPSPPGADPSRGAPI 660
Query: 661 GGRFDRQASAEGCFYNADYLAARARLAGELAGQEEEEALEGLEVMDVFLRFSGLHLFRAV 720
GGRFDRQASAEGCFYNADYLAARARLAGELAGQEEEEALEGLEVMDVFLRFSGLHLFRAV
Sbjct: 661 GGRFDRQASAEGCFYNADYLAARARLAGELAGQEEEEALEGLEVMDVFLRFSGLHLFRAV 720
Query: 721 EPGLVQKFSLRDCSPRLSEELYHRCRLSNLEGLGGRAQLAMALFEQEQANST 772
EPGLVQKFSLRDCSPRLSEELYHRCRLSNLEGLGGRAQLAMALFEQEQANST
Sbjct: 721 EPGLVQKFSLRDCSPRLSEELYHRCRLSNLEGLGGRAQLAMALFEQEQANST 772
>gi|27545323 chondroitin polymerizing factor [Homo sapiens]
Length = 775
Score = 848 bits (2192), Expect = 0.0
Identities = 453/799 (56%), Positives = 557/799 (69%), Gaps = 51/799 (6%)
Query: 1 MRLSSLLALLRPALPLILGLSLGCSLSLLRVSWIQGEGEDPCVEAVGERGG----PQNPD 56
MR S LL++LRPA P+ +G+SLG +LSLL V+W+ E+PC + G P+
Sbjct: 1 MRASLLLSVLRPAGPVAVGISLGFTLSLLSVTWV----EEPCGPGPPQPGDSELPPRGNT 56
Query: 57 SRARLDQS----------------DEDFKPRIVPYY-RDPNKPYKKVLRTRYIQTELGSR 99
+ AR S E+++PR++PY+ P + KK +RTRYI TELG R
Sbjct: 57 NAARRPNSVQPGAEREKPGAGEGAGENWEPRVLPYHPAQPGQAAKKAVRTRYISTELGIR 116
Query: 100 ERLLVAVLTSRATLSTLAVAVNRTVAHHFPRLLYFTGQRGARAPAGMQVVSHGDERPAWL 159
+RLLVAVLTS+ TL TL VAVNRT+ H R+++ TG RG RAP GM VV+ G+ERP
Sbjct: 117 QRLLVAVLTSQTTLPTLGVAVNRTLGHRLERVVFLTGARGRRAPPGMAVVTLGEERPIGH 176
Query: 160 MSETLRHLHTHFGADYDWFFIMQDDTYVQAPRLAALAGHLSINQ--DLYLGRAEEFIGAG 217
+ LRHL G D+DWFF++ D TY +A LA L GHLS+ LYLGR ++FIG G
Sbjct: 177 LHLALRHLLEQHGDDFDWFFLVPDTTYTEAHGLARLTGHLSLASAAHLYLGRPQDFIG-G 235
Query: 218 EQA--RYCHGGFGYLLSRSLLLRLRPHLDGCRGDILSARPDEWLGRCLIDSLGVGCVSQH 275
E RYCHGGFG LLSR LL +LRPHL+GCR DI+SARPDEWLGRC++D+ GVGC H
Sbjct: 236 EPTPGRYCHGGFGVLLSRMLLQQLRPHLEGCRNDIVSARPDEWLGRCILDATGVGCTGDH 295
Query: 276 QGQQYRSFELAKNRDPEKEGSSAFLSAFAVHPVSEGTLMYRLHKRFSALELERAYSEIEQ 335
+G Y EL+ +P +EG F SA HPV + MY+LHK F+ ELER Y EI++
Sbjct: 296 EGVHYSHLELSPG-EPVQEGDPHFRSALTAHPVRDPVHMYQLHKAFARAELERTYQEIQE 354
Query: 336 LQAQIRNLTVLTPEGEAGLSWPVGLPAPFTPHSRFEVLGWDYFTEQHTFSCADGAPKCPL 395
LQ +I+N + L +G+ +WPVG+PAP P SRFEVL WDYFTEQH FSCADG+P+CPL
Sbjct: 355 LQWEIQNTSHLAVDGDRAAAWPVGIPAPSRPASRFEVLRWDYFTEQHAFSCADGSPRCPL 414
Query: 396 QGASRADVGDALETALEQLNRRYQPRLRFQKQRLLNGYRRFDPARGMEYTLDLLLECVTQ 455
+GA RADV D L TALE+LNRRY P LR QKQ+L+NGYRRFDPARGMEYTLDL LE +T
Sbjct: 415 RGADRADVADVLGTALEELNRRYHPALRLQKQQLVNGYRRFDPARGMEYTLDLQLEALTP 474
Query: 456 RGHRRALARRVSLLRPLSRVEILPMPYVTEATRVQLVLPLLVAEAAAAPAFLEAFAANVL 515
+G RR L RRV LLRPLSRVEILP+PYVTEA+R+ ++LPL AE AP FLEAFA L
Sbjct: 475 QGGRRPLTRRVQLLRPLSRVEILPVPYVTEASRLTVLLPLAAAERDLAPGFLEAFATAAL 534
Query: 516 EPRE-HALLTLLLVYGPREGGRGA-PDPFLGVKAAAAELERRYPGTRLAWLAVRAEAPSQ 573
EP + A LTLLL+Y PR+ R A D F VKA AELERR+PG R+ WL+V+ APS
Sbjct: 535 EPGDAAAALTLLLLYEPRQAQRVAHADVFAPVKAHVAELERRFPGARVPWLSVQTAAPSP 594
Query: 574 VRLMDVVSKKHPVDTLFFLTTVWTRPGPEVLNRCRMNAISGWQAFFPVHFQEFNPALSPQ 633
+RLMD++SKKHP+DTLF L T P+ LNRCRM+AISGWQAFFP+HFQ F+PA++P
Sbjct: 595 LRLMDLLSKKHPLDTLFLLAGPDTVLTPDFLNRCRMHAISGWQAFFPMHFQAFHPAVAPP 654
Query: 634 RSPPGPPGAGPDPPSPPGADPSRGAPIGGRFDRQASAEGCFYNADYLAARARLAGELAGQ 693
+ PGPP G D GRFDRQA++E CFYN+DY+AAR RLA A +
Sbjct: 655 QG-PGPPELGRDT---------------GRFDRQAASEACFYNSDYVAARGRLAA--ASE 696
Query: 694 EEEEALEGLEVMDVFLRFSGLHLFRAVEPGLVQKFSLRDCSPRLSEELYHRCRLSNLEGL 753
+EEE LE L+V ++FL FS LH+ RAVEP L+Q++ + CS RLSE+LYHRC S LEGL
Sbjct: 697 QEEELLESLDVYELFLHFSSLHVLRAVEPALLQRYRAQTCSARLSEDLYHRCLQSVLEGL 756
Query: 754 GGRAQLAMALFEQEQANST 772
G R QLAM LFEQEQ NST
Sbjct: 757 GSRTQLAMLLFEQEQGNST 775
>gi|31542309 chondroitin sulfate synthase 1 [Homo sapiens]
Length = 802
Score = 172 bits (437), Expect = 8e-43
Identities = 208/836 (24%), Positives = 335/836 (40%), Gaps = 136/836 (16%)
Query: 8 ALLRPALPLILGLSLGCSLSLLRVSWIQGEGEDPCVEAVGERGGPQNPDSRARLDQSDED 67
A L L L+LG L L L R S ++ G G R G Q S+A + D
Sbjct: 8 AWLSVLLGLVLGFVLASRLVLPRASELKRAGPRRRASPEGCRSG-QAAASQAGGARGDAR 66
Query: 68 FKPRIVPYYRDPNKPYKKVLRTRYIQTELGSRER--LLVAVLTSRATLSTLAVAVNRTVA 125
++ P DP+ G R+R L V V+T++ L T AVA RT +
Sbjct: 67 -GAQLWPPGSDPDG---------------GPRDRNFLFVGVMTAQKYLQTRAVAAYRTWS 110
Query: 126 HHFPRLLYFTGQRGARAPAGMQVV-------SHGDERPAWLMSETLRHLHTHFGADYDWF 178
P + F G+ + VV S+ ++ +++M L+++H H+ Y+WF
Sbjct: 111 KTIPGKVQFFSSEGSDTSVPIPVVPLRGVDDSYPPQKKSFMM---LKYMHDHYLDKYEWF 167
Query: 179 FIMQDDTYVQAPRLAALAGHLSINQDLYLGRAEEFIGAGEQA---------RYCHGGFGY 229
DD Y++ RL L+ ++ L+LG+ +G E+ +C GG G
Sbjct: 168 MRADDDVYIKGDRLENFLRSLNSSEPLFLGQTG--LGTTEEMGKLALEPGENFCMGGPGV 225
Query: 230 LLSRSLLLRLRPHLDGCRGDILSARPDEWLGRCLIDSLGVGCVSQHQGQQ--YRSFELAK 287
++SR +L R+ PH+ C ++ + D +GRC+ GV CV ++ QQ Y ++E K
Sbjct: 226 IMSREVLRRMVPHIGKCLREMYTTHEDVEVGRCVRRFAGVQCVWSYEMQQLFYENYEQNK 285
Query: 288 NRDPEKEGSSAFLSAFAVHPVSEGTLMYRLHKRFSALELERAYSEIEQLQAQI-RNLTVL 346
+S A +HP YRLH + L R SE+ Q+ R + ++
Sbjct: 286 KGYIRDLHNSKIHQAITLHPNKNPPYQYRLH----SYMLSRKISELRHRTIQLHREIVLM 341
Query: 347 TPEGEAGL---SWPVGLPAP---FTPHSRFEVLGWDYFTEQHTFSCADG-APKCPLQGAS 399
+ + +G+P F P R E+L W++ T ++ +S DG P+ + A
Sbjct: 342 SKYSNTEIHKEDLQLGIPPSFMRFQPRQREEILEWEFLTGKYLYSAVDGQPPRRGMDSAQ 401
Query: 400 RADVGDALETALEQLNRRYQPRLR-FQKQRLLNGYRRFDPARGMEYTLDLLLECVTQRGH 458
R + D + +E +N + R R + + GYRR +P G EY LDLLL +G
Sbjct: 402 REALDDIVMQVMEMINANAKTRGRIIDFKEIQYGYRRVNPMYGAEYILDLLLLYKKHKGK 461
Query: 459 R----------------------------RALARRVS--------LLRPLSRVEILPMP- 481
+ + LA+R++ L L ++ +P
Sbjct: 462 KMTVPVRRHAYLQQTFSKIQFVEHEELDAQELAKRINQESGSLSFLSNSLKKLVPFQLPG 521
Query: 482 -----YVTEATRVQLVLPLLVAEAAAAPAFLEAFAANVLEPREHALLTLLLVYGPREGGR 536
+ ++ +++P L F+ F L P ++ L +LL
Sbjct: 522 SKSEHKEPKDKKINILIP-LSGRFDMFVRFMGNFEKTCLIPNQNVKLVVLLF-----NSD 575
Query: 537 GAPDPFLGVKAAAAELER----RYPGTRLAWLAVRAEAPSQVRLMDVVSKKHPVDTLFFL 592
PD KA EL R +YP + L V E S+ ++V S + ++L F
Sbjct: 576 SNPD-----KAKQVELMRDYRIKYPKADMQILPVSGEF-SRALALEVGSSQFNNESLLFF 629
Query: 593 TTVWTRPGPEVLNRCRMNAISGWQAFFPVHFQEFNPALSPQRSPPGPPGAGPDPPSPPGA 652
V E L RCR N + G Q +FP+ F +++P + +G P A
Sbjct: 630 CDVDLVFTTEFLQRCRANTVLGQQIYFPIIFSQYDPKI---------VYSGKVPSDNHFA 680
Query: 653 DPSRGAPIGGRFDRQASAEGCFYNADYLAARARLAGELAGQEEEEALEGLEVMDVFLRF- 711
+ G + C Y D + + G + GLE +D+F +
Sbjct: 681 FTQK----TGFWRNYGFGITCIYKGDLV--------RVGGFDVSIQGWGLEDVDLFNKVV 728
Query: 712 -SGLHLFRAVEPGLVQKFSLRDCSPRLSEELYHRCRLSNLEGLGGRAQLAMALFEQ 766
+GL FR+ E G+V C P L + Y C S G QLA E+
Sbjct: 729 QAGLKTFRSQEVGVVHVHHPVFCDPNLDPKQYKMCLGSKASTYGSTQQLAEMWLEK 784
>gi|74271903 chondroitin sulfate synthase 3 [Homo sapiens]
Length = 882
Score = 172 bits (436), Expect = 1e-42
Identities = 178/743 (23%), Positives = 313/743 (42%), Gaps = 116/743 (15%)
Query: 99 RERLLVAVLTSRATLSTLAVAVNRTVAHHFP-RLLYFTGQRGARA---PAGMQVV----- 149
R+ L V V+T++ L + A+A RT A P R+ +F+ Q+ A P + V+
Sbjct: 170 RDFLYVGVMTAQKYLGSRALAAQRTWARFIPGRVEFFSSQQPPNAGQPPPPLPVIALPGV 229
Query: 150 --SHGDERPAWLMSETLRHLHTHFGADYDWFFIMQDDTYVQAPRLAALAGHLSINQDLYL 207
S+ ++ +++M ++++H H+ Y+WF DD Y++ +L L+ ++ LYL
Sbjct: 230 DDSYPPQKKSFMM---IKYMHDHYLDKYEWFMRADDDVYIKGDKLEEFLRSLNSSKPLYL 286
Query: 208 GRA-----EEF--IGAGEQARYCHGGFGYLLSRSLLLRLRPHLDGCRGDILSARPDEWLG 260
G+ EE +G +C GG G + SR +L R+ PH+ C ++ + D +G
Sbjct: 287 GQTGLGNIEELGKLGLEPGENFCMGGPGMIFSREVLRRMVPHIGECLREMYTTHEDVEVG 346
Query: 261 RCLIDSLGVGCVSQHQGQQ--YRSFELAKNRDPEKEGSSAFLSAFAVHPVSEGTLMYRLH 318
RC+ G CV ++ QQ + ++E + + +S +A +HP YRLH
Sbjct: 347 RCVRRFGGTQCVWSYEMQQLFHENYEHNRKGYIQDLHNSKIHAAITLHPNKRPAYQYRLH 406
Query: 319 K----------RFSALELERAYSEIEQLQAQIRNLTVLTPEGEAGLSWPVGLPA--PFTP 366
R+ ++L R L +++ N V + + G+ +P+ F P
Sbjct: 407 NYMLSRKISELRYRTIQLHRE----SALMSKLSNTEVSKEDQQLGV-----IPSFNHFQP 457
Query: 367 HSRFEVLGWDYFTEQHTFSCADG-APKCPLQGASRADVGDALETALEQLNRRYQPRLR-F 424
R EV+ W++ T + +S A+ P+ L R + D + +E +N + R R
Sbjct: 458 RERNEVIEWEFLTGKLLYSAAENQPPRQSLSSILRTALDDTVLQVMEMINENAKSRGRLI 517
Query: 425 QKQRLLNGYRRFDPARGMEYTLDLLLECVTQRGHRRAL-ARRVSLLRPL------SRVEI 477
+ + GYRR +P G+EY LDLLL +G + + RR + L+ L E
Sbjct: 518 DFKEIQYGYRRVNPMHGVEYILDLLLLYKRHKGRKLTVPVRRHAYLQQLFSKPFFRETEE 577
Query: 478 LPMPYVTEA--------------------------------TRVQLVLPLLVAEAAAAPA 505
L + + E+ +V +++P L+
Sbjct: 578 LDVNSLVESINSETQSFSFISNSLKILSSFQGAKEMGGHNEKKVHILVP-LIGRYDIFLR 636
Query: 506 FLEAFAANVLEPREHALLTLLLVYGPREGGRGAPDPFLGVKAAAAELERRYPGTRLAWLA 565
F+E F L P+++ L ++L R+ G+ + +K + +YP + +
Sbjct: 637 FMENFENMCLIPKQNVKLVIILF--SRDSGQDSSKHIELIKG----YQNKYPKAEMTLIP 690
Query: 566 VRAEAPSQVRLMDVVSKKHPVDTLFFLTTVWTRPGPEVLNRCRMNAISGWQAFFPVHFQE 625
++ E + L ++ S + DTL V + L RCR N I G Q ++P+ F +
Sbjct: 691 MKGEFSRGLGL-EMASAQFDNDTLLLFCDVDLIFREDFLQRCRDNTIQGQQVYYPIIFSQ 749
Query: 626 FNPALSPQRSPPGPPGAGPDPPSPPGADPSRGAPIGGRFDRQASAEGCFYNADYLAARAR 685
++P ++ + +PP D + G + C Y +D L A
Sbjct: 750 YDPKVT-------------NGGNPPTDDYFIFSKKTGFWRDYGYGITCIYKSDLLGA--- 793
Query: 686 LAGELAGQEEEEALEGLEVMDVFLR--FSGLHLFRAVEPGLVQKFSLRDCSPRLSEELYH 743
G + GLE +D++ + SGL FR+ E G+V F C P L + Y
Sbjct: 794 -----GGFDTSIQGWGLEDVDLYNKVILSGLRPFRSQEVGVVHIFHPVHCDPNLDPKQYK 848
Query: 744 RCRLSNLEGLGGRAQLAMALFEQ 766
C S QLA E+
Sbjct: 849 MCLGSKASTFASTMQLAELWLEK 871
>gi|9910144 core 1 synthase, glycoprotein-N-acetylgalactosamine
3-beta-galactosyltransferase, 1 [Homo sapiens]
Length = 363
Score = 65.5 bits (158), Expect = 2e-10
Identities = 48/173 (27%), Positives = 73/173 (42%), Gaps = 5/173 (2%)
Query: 92 IQTELGSRERLLVAVLTSRATLSTLAVAVNRTVAHHFPRLLYFTGQRGARAPAGMQVVSH 151
I L + R+L V+T L A V T A ++L+ + + PA
Sbjct: 79 IAENLYQKVRILCWVMTGPQNLEKKAKHVKATWAQRCNKVLFMSSEENKDFPAVGLKTKE 138
Query: 152 GDERPAWLMSETLRHLHTHFGADYDWFFIMQDDTYVQAPRLAALAGHLSINQDLYLGRA- 210
G ++ W + +++H H+ D DWF DDTYV L L + +Y GR
Sbjct: 139 GRDQLYWKTIKAFQYVHEHYLEDADWFLKADDDTYVILDNLRWLLSKYDPEEPIYFGRRF 198
Query: 211 EEFIGAGEQARYCHGGFGYLLSRSLLLRLRPHLDGCRGDILSARPDEWLGRCL 263
+ ++ G Y GG GY+LS+ L R + S+ D LGRC+
Sbjct: 199 KPYVKQG----YMSGGAGYVLSKEALKRFVDAFKTDKCTHSSSIEDLALGRCM 247
>gi|24429592 chondroitin sulfate N-acetylgalactosaminyltransferase 2
[Homo sapiens]
Length = 542
Score = 53.5 bits (127), Expect = 7e-07
Identities = 92/421 (21%), Positives = 154/421 (36%), Gaps = 58/421 (13%)
Query: 368 SRFEVLGWDYFTEQHTFSCADGAPKCPLQGASRADVGDAL----ETALEQLNRRYQP--- 420
S + V+ ++ FT F G + P + R D D L E LE +N +
Sbjct: 141 SEYGVIPFESFTLMKVFQLEMGLTRHPEEKPVRKDKRDELVEVIEAGLEVINNPDEDDEQ 200
Query: 421 ---------RLRFQKQRLLNGYRRFDPARGMEYTLDLLLECVTQRGHRRALARRVSLLRP 471
+L F + + GY R + +G +Y L +T+ H V+L RP
Sbjct: 201 EDEEGPLGEKLIFNENDFVEGYYRTERDKGTQYELFFKKADLTEYRH-------VTLFRP 253
Query: 472 LSRVEILPMPYVTEATRVQLVLPLLVAEAAAAPAFLEAFAANVLEPREHALLTLLLVYGP 531
+ + + + ++ L A F++ F + + LT+ VY
Sbjct: 254 FGPLMKVKSEMIDITRSIINIIVPLAERTEAFVQFMQNFRDVCIHQDKKIHLTV--VYFG 311
Query: 532 REGGRGAPDPFLGVKAAAAELERRYPGTRLAWLAVRAEAPSQVRLMDVVSKKHPV-DTLF 590
+EG V + E + L L E ++ R ++V ++ + L
Sbjct: 312 KEGLSKVKSILESVTS-----ESNFHNYTLVSLN---EEFNRGRGLNVGARAWDKGEVLM 363
Query: 591 FLTTVWTRPGPEVLNRCRMNAISGWQAFFPVHFQEFNPAL--SPQRSPPGPPGAGPDPPS 648
F V E LN CR+NA G + F+PV F +NPA+ + Q P
Sbjct: 364 FFCDVDIYFSAEFLNSCRLNAEPGKKVFYPVVFSLYNPAIVYANQEVP------------ 411
Query: 649 PPGADPSRGAPIGGRFDRQASAEGCFYNADYLAARARLAGELAGQEEEEALEGLEVMDVF 708
PP G + C Y +D+L + G + E G E + ++
Sbjct: 412 PPVEQQLVHKKDSGFWRDFGFGMTCQYRSDFLT--------IGGFDMEVKGWGGEDVHLY 463
Query: 709 LRF--SGLHLFRAVEPGLVQKFSLRDCSPRLSEELYHRCRLSNLEGLGGRAQLAMALFEQ 766
++ L + R PGL + + C+ L+ E Y C S + L M +F +
Sbjct: 464 RKYLHGDLIVIRTPVPGLFHLWHEKRCADELTPEQYRMCIQSKAMNEASHSHLGMLVFRE 523
Query: 767 E 767
E
Sbjct: 524 E 524
>gi|194473684 chondroitin sulfate N-acetylgalactosaminyltransferase
1 [Homo sapiens]
Length = 532
Score = 48.9 bits (115), Expect = 2e-05
Identities = 87/410 (21%), Positives = 149/410 (36%), Gaps = 45/410 (10%)
Query: 368 SRFEVLGWDYFTEQHTFSCADGAPKCPLQGASRADVGD----ALETALEQLNRRYQ--PR 421
+ + + +D FT Q + G + P + R D D A+E+ALE LN + P
Sbjct: 141 TEYAAVPFDSFTLQKVYQLETGLTRHPEEKPVRKDKRDELVEAIESALETLNSPAENSPN 200
Query: 422 LR-FQKQRLLNGYRRFDPARGMEYTLDLLLECVTQRGHRRALARRVSLLRPLSRVEILPM 480
R + + G R + +G Y L T +G + +R+ L RP + +
Sbjct: 201 HRPYTASDFIEGIYRTERDKGTLYEL-------TFKGDHKHEFKRLILFRPFGPIMKVKN 253
Query: 481 PYVTEATRVQLVLPLLVAEAAAAPAFLEAFAANVLEPREHALLTLLLVYGPREGGRGAPD 540
+ A + V+ L F++ F +E LT++ +G E
Sbjct: 254 EKLNMANTLINVIVPLAKRVDKFRQFMQNFREMCIEQDGRVHLTVVY-FGKEEINE---- 308
Query: 541 PFLGVKAAAAELERRYPGTRLAWLAVRAEAPSQVRLMDVVSKKHP-VDTLFFLTTVWTRP 599
VK + ++ + E S+ + +DV ++ + L F V
Sbjct: 309 ----VKGILENTSKAANFRNFTFIQLNGEF-SRGKGLDVGARFWKGSNVLLFFCDVDIYF 363
Query: 600 GPEVLNRCRMNAISGWQAFFPVHFQEFNPALSPQRSPPGPPGAGPDPPSPPGADPSRGAP 659
E LN CR+N G + F+PV F ++NP + G PP
Sbjct: 364 TSEFLNTCRLNTQPGKKVFYPVLFSQYNPGII----------YGHHDAVPPLEQQLVIKK 413
Query: 660 IGGRFDRQASAEGCFYNADYLAARARLAGELAGQEEEEALEGLEVMDVFLRF--SGLHLF 717
G + C Y +D++ + G + + G E + ++ ++ S L +
Sbjct: 414 ETGFWRDFGFGMTCQYRSDFI--------NIGGFDLDIKGWGGEDVHLYRKYLHSNLIVV 465
Query: 718 RAVEPGLVQKFSLRDCSPRLSEELYHRCRLSNLEGLGGRAQLAMALFEQE 767
R GL + + C L+ E Y C S QL M +F E
Sbjct: 466 RTPVRGLFHLWHEKRCMDELTPEQYKMCMQSKAMNEASHGQLGMLVFRHE 515
>gi|194473683 chondroitin sulfate N-acetylgalactosaminyltransferase
1 [Homo sapiens]
Length = 532
Score = 48.9 bits (115), Expect = 2e-05
Identities = 87/410 (21%), Positives = 149/410 (36%), Gaps = 45/410 (10%)
Query: 368 SRFEVLGWDYFTEQHTFSCADGAPKCPLQGASRADVGD----ALETALEQLNRRYQ--PR 421
+ + + +D FT Q + G + P + R D D A+E+ALE LN + P
Sbjct: 141 TEYAAVPFDSFTLQKVYQLETGLTRHPEEKPVRKDKRDELVEAIESALETLNSPAENSPN 200
Query: 422 LR-FQKQRLLNGYRRFDPARGMEYTLDLLLECVTQRGHRRALARRVSLLRPLSRVEILPM 480
R + + G R + +G Y L T +G + +R+ L RP + +
Sbjct: 201 HRPYTASDFIEGIYRTERDKGTLYEL-------TFKGDHKHEFKRLILFRPFGPIMKVKN 253
Query: 481 PYVTEATRVQLVLPLLVAEAAAAPAFLEAFAANVLEPREHALLTLLLVYGPREGGRGAPD 540
+ A + V+ L F++ F +E LT++ +G E
Sbjct: 254 EKLNMANTLINVIVPLAKRVDKFRQFMQNFREMCIEQDGRVHLTVVY-FGKEEINE---- 308
Query: 541 PFLGVKAAAAELERRYPGTRLAWLAVRAEAPSQVRLMDVVSKKHP-VDTLFFLTTVWTRP 599
VK + ++ + E S+ + +DV ++ + L F V
Sbjct: 309 ----VKGILENTSKAANFRNFTFIQLNGEF-SRGKGLDVGARFWKGSNVLLFFCDVDIYF 363
Query: 600 GPEVLNRCRMNAISGWQAFFPVHFQEFNPALSPQRSPPGPPGAGPDPPSPPGADPSRGAP 659
E LN CR+N G + F+PV F ++NP + G PP
Sbjct: 364 TSEFLNTCRLNTQPGKKVFYPVLFSQYNPGII----------YGHHDAVPPLEQQLVIKK 413
Query: 660 IGGRFDRQASAEGCFYNADYLAARARLAGELAGQEEEEALEGLEVMDVFLRF--SGLHLF 717
G + C Y +D++ + G + + G E + ++ ++ S L +
Sbjct: 414 ETGFWRDFGFGMTCQYRSDFI--------NIGGFDLDIKGWGGEDVHLYRKYLHSNLIVV 465
Query: 718 RAVEPGLVQKFSLRDCSPRLSEELYHRCRLSNLEGLGGRAQLAMALFEQE 767
R GL + + C L+ E Y C S QL M +F E
Sbjct: 466 RTPVRGLFHLWHEKRCMDELTPEQYKMCMQSKAMNEASHGQLGMLVFRHE 515
>gi|74271816 radical fringe [Homo sapiens]
Length = 331
Score = 45.8 bits (107), Expect = 1e-04
Identities = 44/157 (28%), Positives = 60/157 (38%), Gaps = 33/157 (21%)
Query: 118 VAVNRTVAHHFPRLLYFTGQRGARAPAGMQVVSHGDERPAWLMS------------ETLR 165
+AV T +H PRL +RA + + GD+ L T +
Sbjct: 62 IAVKTTRKNHGPRLRLLLRTWISRARQQTFIFTDGDDPELELQGGDRVINTNCSAVRTRQ 121
Query: 166 HLHTHFGADYD--------WFFIMQDDTYVQAPRLAALAGHLSINQDLYLGR-------- 209
L +YD WF + DD YV A L L S +QD+YLGR
Sbjct: 122 ALCCKMSVEYDKFIESGRKWFCHVDDDNYVNARSLLHLLSSFSPSQDVYLGRPSLDHPIE 181
Query: 210 AEEFIGAGEQAR-----YCHGGFGYLLSRSLLLRLRP 241
A E + G + GG G+ LSR L L++ P
Sbjct: 182 ATERVQGGRTVTTVKFWFATGGAGFCLSRGLALKMSP 218
>gi|148612882 cat eye syndrome chromosome region, candidate 2 [Homo
sapiens]
Length = 1484
Score = 40.0 bits (92), Expect = 0.008
Identities = 27/84 (32%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
Query: 620 PVHFQEFNPALSPQRSPPGPPGAGPDPPSPPGADPSRGAPIGGRFDRQASAEGCFYNADY 679
P F ++ L PQ SP GPP + P PP +D + A + G A+ D
Sbjct: 1226 PQSFSDWQRPLHPQGSPSGPPASQPPPPRSLFSDKNAMASLQGCETLNAALTSP-TRMDA 1284
Query: 680 LAARARLAGELAGQEEEEALEGLE 703
+AA+ G+ G EEE+ E +E
Sbjct: 1285 VAAKVPNDGQNPGPEEEKLDESME 1308
>gi|115334682 SNAP25-interacting protein [Homo sapiens]
Length = 1183
Score = 39.3 bits (90), Expect = 0.014
Identities = 23/76 (30%), Positives = 32/76 (42%), Gaps = 2/76 (2%)
Query: 628 PALSPQR--SPPGPPGAGPDPPSPPGADPSRGAPIGGRFDRQASAEGCFYNADYLAARAR 685
P SPQ+ PPG P P SP PSRG+P+ F + + + F + R+
Sbjct: 471 PPSSPQKLADVAAPPGGPPPPHSPYSGPPSRGSPVRQSFRKDSGSSSVFAESPGGKTRSA 530
Query: 686 LAGELAGQEEEEALEG 701
+ AG E G
Sbjct: 531 GSASTAGAPPSELFPG 546
>gi|98986321 gliomedin [Homo sapiens]
Length = 551
Score = 38.5 bits (88), Expect = 0.024
Identities = 21/50 (42%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 636 PPGPPGAGPDPPSPPGADPSRGAPIGGRFDRQASAEGC-FYNADYLAARA 684
PPGPPG P PP PPG+ ++G F+ Q E C N D L +A
Sbjct: 240 PPGPPGP-PGPPGPPGSRRAKGPRQPSMFNGQCPGETCAIPNDDTLVGKA 288
>gi|23510368 homeobox D11 [Homo sapiens]
Length = 338
Score = 38.1 bits (87), Expect = 0.031
Identities = 42/135 (31%), Positives = 48/135 (35%), Gaps = 25/135 (18%)
Query: 530 GPREGGRGAPD--PFLGVKAAAAELERRYPGTRLAWLAVRAEAPSQVRLMDVVSKKHPVD 587
GP GG GA P+ AAAA A A EA Q L+ ++ D
Sbjct: 92 GPGGGGGGAGGYAPYYAAAAAAA-----------AAAAAAEEAAMQRELLPPAGRRP--D 138
Query: 588 TLFFLTT-VWTRPGPE---VLNRCRMNAISGWQAFFPVHFQEFNPALSPQRSPPGPPGAG 643
LF V PGP + G P F +F A PGPP AG
Sbjct: 139 VLFKAPEPVCAAPGPPHGPAGAASNFYSAVGRNGILPQGFDQFYEAA------PGPPFAG 192
Query: 644 PDPPSPPGADPSRGA 658
P PP PP GA
Sbjct: 193 PQPPPPPAPPQPEGA 207
>gi|56606142 complement component 1, q subcomponent-like 4 [Homo
sapiens]
Length = 238
Score = 36.6 bits (83), Expect = 0.091
Identities = 20/47 (42%), Positives = 20/47 (42%), Gaps = 8/47 (17%)
Query: 634 RSPPGPPG--------AGPDPPSPPGADPSRGAPIGGRFDRQASAEG 672
R PPGPPG P PP PPG P AP G R A G
Sbjct: 69 RGPPGPPGPRGPPGEPGRPGPPGPPGPGPGGVAPAAGYVPRIAFYAG 115
>gi|21536461 O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase
[Homo sapiens]
Length = 321
Score = 36.6 bits (83), Expect = 0.091
Identities = 26/91 (28%), Positives = 38/91 (41%), Gaps = 12/91 (13%)
Query: 169 THFGADYDWFFIMQDDTYVQAPRLAALAGHLSINQDLYLGR--AEEFIGAGE-------- 218
T + WF + DD YV L L + +D+Y+GR I A E
Sbjct: 129 TFLASGLRWFCHVDDDNYVNPRALLQLLRAFPLARDVYVGRPSLNRPIHASEPQPHNRTR 188
Query: 219 --QARYCHGGFGYLLSRSLLLRLRPHLDGCR 247
Q + GG G+ ++R L L++ P G R
Sbjct: 189 LVQFWFATGGAGFCINRKLALKMAPWASGSR 219
>gi|191252785 centrobin, centrosomal BRCA2 interacting protein
isoform alpha [Homo sapiens]
Length = 903
Score = 36.2 bits (82), Expect = 0.12
Identities = 18/57 (31%), Positives = 24/57 (42%)
Query: 600 GPEVLNRCRMNAISGWQAFFPVHFQEFNPALSPQRSPPGPPGAGPDPPSPPGADPSR 656
G + L R+ + QA H+ E N LS PP PP P SP +P +
Sbjct: 538 GNQQLEEQRVELVERLQAMLQAHWDEANQLLSTTLPPPNPPAPPAGPSSPGPQEPEK 594
>gi|80861396 centrobin, centrosomal BRCA2 interacting protein
isoform beta [Homo sapiens]
Length = 925
Score = 36.2 bits (82), Expect = 0.12
Identities = 18/57 (31%), Positives = 24/57 (42%)
Query: 600 GPEVLNRCRMNAISGWQAFFPVHFQEFNPALSPQRSPPGPPGAGPDPPSPPGADPSR 656
G + L R+ + QA H+ E N LS PP PP P SP +P +
Sbjct: 538 GNQQLEEQRVELVERLQAMLQAHWDEANQLLSTTLPPPNPPAPPAGPSSPGPQEPEK 594
>gi|16950645 neurotrophic factor artemin isoform 2 [Homo sapiens]
Length = 237
Score = 35.8 bits (81), Expect = 0.15
Identities = 22/56 (39%), Positives = 26/56 (46%), Gaps = 4/56 (7%)
Query: 633 QRSPPGPPGAGPDPPSPPGADP--SRGAPIGGRFD--RQASAEGCFYNADYLAARA 684
+R PP P P PP+PP A P R A GG R A A GC + + RA
Sbjct: 96 RRPPPQPSRPAPPPPAPPSALPRGGRAARAGGPGSRARAAGARGCRLRSQLVPVRA 151
>gi|209954781 neurotrophic factor artemin isoform 1 precursor [Homo
sapiens]
Length = 220
Score = 35.8 bits (81), Expect = 0.15
Identities = 22/56 (39%), Positives = 26/56 (46%), Gaps = 4/56 (7%)
Query: 633 QRSPPGPPGAGPDPPSPPGADP--SRGAPIGGRFD--RQASAEGCFYNADYLAARA 684
+R PP P P PP+PP A P R A GG R A A GC + + RA
Sbjct: 79 RRPPPQPSRPAPPPPAPPSALPRGGRAARAGGPGSRARAAGARGCRLRSQLVPVRA 134
>gi|209954778 neurotrophic factor artemin isoform 3 precursor [Homo
sapiens]
Length = 228
Score = 35.8 bits (81), Expect = 0.15
Identities = 22/56 (39%), Positives = 26/56 (46%), Gaps = 4/56 (7%)
Query: 633 QRSPPGPPGAGPDPPSPPGADP--SRGAPIGGRFD--RQASAEGCFYNADYLAARA 684
+R PP P P PP+PP A P R A GG R A A GC + + RA
Sbjct: 87 RRPPPQPSRPAPPPPAPPSALPRGGRAARAGGPGSRARAAGARGCRLRSQLVPVRA 142
>gi|209954776 neurotrophic factor artemin isoform 1 precursor [Homo
sapiens]
Length = 220
Score = 35.8 bits (81), Expect = 0.15
Identities = 22/56 (39%), Positives = 26/56 (46%), Gaps = 4/56 (7%)
Query: 633 QRSPPGPPGAGPDPPSPPGADP--SRGAPIGGRFD--RQASAEGCFYNADYLAARA 684
+R PP P P PP+PP A P R A GG R A A GC + + RA
Sbjct: 79 RRPPPQPSRPAPPPPAPPSALPRGGRAARAGGPGSRARAAGARGCRLRSQLVPVRA 134
>gi|209977029 neurotrophic factor artemin isoform 3 precursor [Homo
sapiens]
Length = 228
Score = 35.8 bits (81), Expect = 0.15
Identities = 22/56 (39%), Positives = 26/56 (46%), Gaps = 4/56 (7%)
Query: 633 QRSPPGPPGAGPDPPSPPGADP--SRGAPIGGRFD--RQASAEGCFYNADYLAARA 684
+R PP P P PP+PP A P R A GG R A A GC + + RA
Sbjct: 87 RRPPPQPSRPAPPPPAPPSALPRGGRAARAGGPGSRARAAGARGCRLRSQLVPVRA 142
>gi|5032069 splicing factor 3b, subunit 4 [Homo sapiens]
Length = 424
Score = 35.4 bits (80), Expect = 0.20
Identities = 19/39 (48%), Positives = 19/39 (48%), Gaps = 4/39 (10%)
Query: 628 PALSPQRSPPGPPGAGPDPPSPPGA----DPSRGAPIGG 662
P P PPG P A P PP PPGA PS G P G
Sbjct: 246 PVPPPGALPPGIPPAMPPPPMPPGAAGHGPPSAGTPGAG 284
Score = 33.1 bits (74), Expect = 1.0
Identities = 14/30 (46%), Positives = 16/30 (53%)
Query: 632 PQRSPPGPPGAGPDPPSPPGADPSRGAPIG 661
P R PPG P GP P P P G+P+G
Sbjct: 334 PPRPPPGMPHPGPPPMGMPPRGPPFGSPMG 363
Score = 31.6 bits (70), Expect = 2.9
Identities = 15/34 (44%), Positives = 16/34 (47%)
Query: 628 PALSPQRSPPGPPGAGPDPPSPPGADPSRGAPIG 661
P S + PP PP P P PP P RG P G
Sbjct: 326 PPGSGGQPPPRPPPGMPHPGPPPMGMPPRGPPFG 359
>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
sapiens]
Length = 1487
Score = 35.0 bits (79), Expect = 0.26
Identities = 17/41 (41%), Positives = 20/41 (48%), Gaps = 4/41 (9%)
Query: 628 PALSPQRSPPGPPGAGPDPPSPPGADPSRGAPIGGRFDRQA 668
P PPGPPG PP PPG + A + G FD +A
Sbjct: 155 PGTPGNPGPPGPPG----PPGPPGLGGNFAAQMAGGFDEKA 191
Score = 30.0 bits (66), Expect = 8.5
Identities = 15/34 (44%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Query: 628 PALSPQRSPPGPPGAG--PDPPSPPGADPSRGAP 659
P + +R PPGP GA P P PG RG P
Sbjct: 260 PGKAGERGPPGPQGARGFPGTPGLPGVKGHRGYP 293
Score = 30.0 bits (66), Expect = 8.5
Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 5/29 (17%)
Query: 636 PPGPPGAGPD-----PPSPPGADPSRGAP 659
PPGP GA + PP P G+ +RGAP
Sbjct: 793 PPGPAGANGEKGEVGPPGPAGSAGARGAP 821
>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
sapiens]
Length = 1418
Score = 35.0 bits (79), Expect = 0.26
Identities = 17/41 (41%), Positives = 20/41 (48%), Gaps = 4/41 (9%)
Query: 628 PALSPQRSPPGPPGAGPDPPSPPGADPSRGAPIGGRFDRQA 668
P PPGPPG PP PPG + A + G FD +A
Sbjct: 86 PGTPGNPGPPGPPG----PPGPPGLGGNFAAQMAGGFDEKA 122
Score = 30.0 bits (66), Expect = 8.5
Identities = 15/34 (44%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Query: 628 PALSPQRSPPGPPGAG--PDPPSPPGADPSRGAP 659
P + +R PPGP GA P P PG RG P
Sbjct: 191 PGKAGERGPPGPQGARGFPGTPGLPGVKGHRGYP 224
Score = 30.0 bits (66), Expect = 8.5
Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 5/29 (17%)
Query: 636 PPGPPGAGPD-----PPSPPGADPSRGAP 659
PPGP GA + PP P G+ +RGAP
Sbjct: 724 PPGPAGANGEKGEVGPPGPAGSAGARGAP 752
>gi|18375673 regulator of nonsense transcripts 1 [Homo sapiens]
Length = 1118
Score = 35.0 bits (79), Expect = 0.26
Identities = 25/78 (32%), Positives = 33/78 (42%), Gaps = 5/78 (6%)
Query: 623 FQEFNPALSPQRSPPGPPGAGPDPPSPPGADPSRGAPIGGRFDRQASAEGCFYNA---DY 679
F +F Q P GP G G PG + A G+ D Q EG N D
Sbjct: 35 FTDFTLPSQTQTPPGGPGGPGGGGAGGPGGAGAGAA--AGQLDAQVGPEGILQNGAVDDS 92
Query: 680 LAARARLAGELAGQEEEE 697
+A ++L EL +E+EE
Sbjct: 93 VAKTSQLLAELNFEEDEE 110
>gi|15890086 type IV collagen alpha 5 isoform 2 precursor [Homo
sapiens]
Length = 1691
Score = 35.0 bits (79), Expect = 0.26
Identities = 16/33 (48%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 621 VHFQEFNPALSPQRSPPGPPGAGPDPPSPPGAD 653
V FQ+ + L R PPGPPG PP PPG +
Sbjct: 253 VEFQKGDQGLPGDRGPPGPPGI-RGPPGPPGGE 284
Score = 31.2 bits (69), Expect = 3.8
Identities = 18/41 (43%), Positives = 21/41 (51%), Gaps = 11/41 (26%)
Query: 636 PPGPPG----------AGPDPPSPPGADPSRGAPIGGRFDR 666
PPGPPG A P PP PPG +GA +G + DR
Sbjct: 738 PPGPPGFPGPKGEPGFALPGPPGPPGLPGFKGA-LGPKGDR 777
>gi|4502955 type IV collagen alpha 5 isoform 1 precursor [Homo
sapiens]
Length = 1685
Score = 35.0 bits (79), Expect = 0.26
Identities = 16/33 (48%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 621 VHFQEFNPALSPQRSPPGPPGAGPDPPSPPGAD 653
V FQ+ + L R PPGPPG PP PPG +
Sbjct: 253 VEFQKGDQGLPGDRGPPGPPGI-RGPPGPPGGE 284
Score = 31.2 bits (69), Expect = 3.8
Identities = 18/41 (43%), Positives = 21/41 (51%), Gaps = 11/41 (26%)
Query: 636 PPGPPG----------AGPDPPSPPGADPSRGAPIGGRFDR 666
PPGPPG A P PP PPG +GA +G + DR
Sbjct: 738 PPGPPGFPGPKGEPGFALPGPPGPPGLPGFKGA-LGPKGDR 777
>gi|15890088 type IV collagen alpha 5 isoform 3 precursor [Homo
sapiens]
Length = 1688
Score = 35.0 bits (79), Expect = 0.26
Identities = 16/33 (48%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 621 VHFQEFNPALSPQRSPPGPPGAGPDPPSPPGAD 653
V FQ+ + L R PPGPPG PP PPG +
Sbjct: 253 VEFQKGDQGLPGDRGPPGPPGI-RGPPGPPGGE 284
Score = 31.2 bits (69), Expect = 3.8
Identities = 18/41 (43%), Positives = 21/41 (51%), Gaps = 11/41 (26%)
Query: 636 PPGPPG----------AGPDPPSPPGADPSRGAPIGGRFDR 666
PPGPPG A P PP PPG +GA +G + DR
Sbjct: 738 PPGPPGFPGPKGEPGFALPGPPGPPGLPGFKGA-LGPKGDR 777
>gi|190014636 hypothetical protein LOC286262 isoform 2 [Homo
sapiens]
Length = 678
Score = 35.0 bits (79), Expect = 0.26
Identities = 17/33 (51%), Positives = 19/33 (57%)
Query: 631 SPQRSPPGPPGAGPDPPSPPGADPSRGAPIGGR 663
SP+R+ P PP P PP PP A PS A G R
Sbjct: 90 SPERARPPPPPPPPAPPRPPPAAPSPPAAPGPR 122
Score = 32.7 bits (73), Expect = 1.3
Identities = 15/38 (39%), Positives = 18/38 (47%)
Query: 628 PALSPQRSPPGPPGAGPDPPSPPGADPSRGAPIGGRFD 665
P P +PP PP A P PP+ PG +P R D
Sbjct: 97 PPPPPPPAPPRPPPAAPSPPAAPGPRGGGASPGARRSD 134
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.322 0.138 0.422
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,273,069
Number of Sequences: 37866
Number of extensions: 1669771
Number of successful extensions: 15201
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 188
Number of HSP's that attempted gapping in prelim test: 12477
Number of HSP's gapped (non-prelim): 2436
length of query: 772
length of database: 18,247,518
effective HSP length: 110
effective length of query: 662
effective length of database: 14,082,258
effective search space: 9322454796
effective search space used: 9322454796
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 66 (30.0 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.