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Search of human proteins with 48255943
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|48255943 CD44 antigen isoform 5 precursor [Homo sapiens]
(139 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|48255943 CD44 antigen isoform 5 precursor [Homo sapiens] 297 2e-81
gi|48255941 CD44 antigen isoform 4 precursor [Homo sapiens] 165 1e-41
gi|48255939 CD44 antigen isoform 3 precursor [Homo sapiens] 165 1e-41
gi|48255937 CD44 antigen isoform 2 precursor [Homo sapiens] 165 1e-41
gi|48255935 CD44 antigen isoform 1 precursor [Homo sapiens] 165 1e-41
gi|40549451 lymphatic vessel endothelial hyaluronan receptor 1 [... 44 3e-05
gi|26051243 tumor necrosis factor, alpha-induced protein 6 precu... 40 6e-04
gi|61743978 stabilin 1 precursor [Homo sapiens] 38 0.003
gi|14110414 heterogeneous nuclear ribonucleoprotein D isoform c ... 30 0.63
gi|51477708 heterogeneous nuclear ribonucleoprotein D isoform d ... 30 0.63
gi|16554449 zonadhesin isoform 3 [Homo sapiens] 30 0.63
gi|27881494 zonadhesin isoform 6 [Homo sapiens] 30 0.63
gi|61743980 stabilin 2 precursor [Homo sapiens] 30 0.83
gi|126090892 aggrecan isoform 2 precursor [Homo sapiens] 28 1.8
gi|126090883 aggrecan isoform 1 precursor [Homo sapiens] 28 1.8
gi|112382250 spectrin, beta, non-erythrocytic 1 isoform 1 [Homo ... 28 1.8
gi|112382252 spectrin, beta, non-erythrocytic 1 isoform 2 [Homo ... 28 2.4
gi|118600983 chondroitin sulfate proteoglycan 3 [Homo sapiens] 28 3.1
gi|239744417 PREDICTED: similar to hCG2023245 [Homo sapiens] 27 4.1
gi|4502901 clathrin, light polypeptide isoform a [Homo sapiens] 27 4.1
gi|229576906 F-box and WD repeat domain containing 12 isoform 3 ... 27 5.4
gi|229576873 F-box and WD repeat domain containing 12 isoform 1 ... 27 5.4
gi|6005995 clathrin, light polypeptide isoform b [Homo sapiens] 27 5.4
gi|62953134 FLYWCH-type zinc finger 1 isoform a [Homo sapiens] 27 5.4
gi|187607300 versican isoform 2 [Homo sapiens] 26 9.1
gi|21361116 versican isoform 1 [Homo sapiens] 26 9.1
gi|239755571 PREDICTED: hypothetical protein [Homo sapiens] 26 9.1
>gi|48255943 CD44 antigen isoform 5 precursor [Homo sapiens]
Length = 139
Score = 297 bits (760), Expect = 2e-81
Identities = 139/139 (100%), Positives = 139/139 (100%)
Query: 1 MDKFWWHAAWGLCLVPLSLAQIDLNITCRFAGVFHVEKNGRYSISRTEAADLCKAFNSTL 60
MDKFWWHAAWGLCLVPLSLAQIDLNITCRFAGVFHVEKNGRYSISRTEAADLCKAFNSTL
Sbjct: 1 MDKFWWHAAWGLCLVPLSLAQIDLNITCRFAGVFHVEKNGRYSISRTEAADLCKAFNSTL 60
Query: 61 PTMAQMEKALSIGFETCSLHCSQQSKKVWAEEKASDQQWQWSCGGQKAKWTQRRGQQVSG 120
PTMAQMEKALSIGFETCSLHCSQQSKKVWAEEKASDQQWQWSCGGQKAKWTQRRGQQVSG
Sbjct: 61 PTMAQMEKALSIGFETCSLHCSQQSKKVWAEEKASDQQWQWSCGGQKAKWTQRRGQQVSG 120
Query: 121 NGAFGEQGVVRNSRPVYDS 139
NGAFGEQGVVRNSRPVYDS
Sbjct: 121 NGAFGEQGVVRNSRPVYDS 139
>gi|48255941 CD44 antigen isoform 4 precursor [Homo sapiens]
Length = 361
Score = 165 bits (417), Expect = 1e-41
Identities = 77/77 (100%), Positives = 77/77 (100%)
Query: 1 MDKFWWHAAWGLCLVPLSLAQIDLNITCRFAGVFHVEKNGRYSISRTEAADLCKAFNSTL 60
MDKFWWHAAWGLCLVPLSLAQIDLNITCRFAGVFHVEKNGRYSISRTEAADLCKAFNSTL
Sbjct: 1 MDKFWWHAAWGLCLVPLSLAQIDLNITCRFAGVFHVEKNGRYSISRTEAADLCKAFNSTL 60
Query: 61 PTMAQMEKALSIGFETC 77
PTMAQMEKALSIGFETC
Sbjct: 61 PTMAQMEKALSIGFETC 77
>gi|48255939 CD44 antigen isoform 3 precursor [Homo sapiens]
Length = 493
Score = 165 bits (417), Expect = 1e-41
Identities = 77/77 (100%), Positives = 77/77 (100%)
Query: 1 MDKFWWHAAWGLCLVPLSLAQIDLNITCRFAGVFHVEKNGRYSISRTEAADLCKAFNSTL 60
MDKFWWHAAWGLCLVPLSLAQIDLNITCRFAGVFHVEKNGRYSISRTEAADLCKAFNSTL
Sbjct: 1 MDKFWWHAAWGLCLVPLSLAQIDLNITCRFAGVFHVEKNGRYSISRTEAADLCKAFNSTL 60
Query: 61 PTMAQMEKALSIGFETC 77
PTMAQMEKALSIGFETC
Sbjct: 61 PTMAQMEKALSIGFETC 77
>gi|48255937 CD44 antigen isoform 2 precursor [Homo sapiens]
Length = 699
Score = 165 bits (417), Expect = 1e-41
Identities = 77/77 (100%), Positives = 77/77 (100%)
Query: 1 MDKFWWHAAWGLCLVPLSLAQIDLNITCRFAGVFHVEKNGRYSISRTEAADLCKAFNSTL 60
MDKFWWHAAWGLCLVPLSLAQIDLNITCRFAGVFHVEKNGRYSISRTEAADLCKAFNSTL
Sbjct: 1 MDKFWWHAAWGLCLVPLSLAQIDLNITCRFAGVFHVEKNGRYSISRTEAADLCKAFNSTL 60
Query: 61 PTMAQMEKALSIGFETC 77
PTMAQMEKALSIGFETC
Sbjct: 61 PTMAQMEKALSIGFETC 77
>gi|48255935 CD44 antigen isoform 1 precursor [Homo sapiens]
Length = 742
Score = 165 bits (417), Expect = 1e-41
Identities = 77/77 (100%), Positives = 77/77 (100%)
Query: 1 MDKFWWHAAWGLCLVPLSLAQIDLNITCRFAGVFHVEKNGRYSISRTEAADLCKAFNSTL 60
MDKFWWHAAWGLCLVPLSLAQIDLNITCRFAGVFHVEKNGRYSISRTEAADLCKAFNSTL
Sbjct: 1 MDKFWWHAAWGLCLVPLSLAQIDLNITCRFAGVFHVEKNGRYSISRTEAADLCKAFNSTL 60
Query: 61 PTMAQMEKALSIGFETC 77
PTMAQMEKALSIGFETC
Sbjct: 61 PTMAQMEKALSIGFETC 77
>gi|40549451 lymphatic vessel endothelial hyaluronan receptor 1
[Homo sapiens]
Length = 322
Score = 44.3 bits (103), Expect = 3e-05
Identities = 20/62 (32%), Positives = 32/62 (51%)
Query: 17 LSLAQIDLNITCRFAGVFHVEKNGRYSISRTEAADLCKAFNSTLPTMAQMEKALSIGFET 76
L ++ + ++CR G+ V K ++ TEA + C+ +L Q+E AL FET
Sbjct: 25 LRAEELSIQVSCRIMGITLVSKKANQQLNFTEAKEACRLLGLSLAGKDQVETALKASFET 84
Query: 77 CS 78
CS
Sbjct: 85 CS 86
>gi|26051243 tumor necrosis factor, alpha-induced protein 6
precursor [Homo sapiens]
Length = 277
Score = 40.0 bits (92), Expect = 6e-04
Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 29 RFAGVFHVE-KNGRYSISRTEAADLCKAFNSTLPTMAQMEKALSIGFETCS 78
R AGV+H E ++G+Y ++ EA +C+ L T Q+E A IGF C+
Sbjct: 33 RAAGVYHREARSGKYKLTYAEAKAVCEFEGGHLATYKQLEAARKIGFHVCA 83
>gi|61743978 stabilin 1 precursor [Homo sapiens]
Length = 2570
Score = 37.7 bits (86), Expect = 0.003
Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 23 DLNITCRFAGVFHVEK-NGRYSISRTEAADLCKAFNSTLPTMAQMEKALSIGFETC 77
DL+ + AGVFH++ +G Y ++ +EA C+A + L + Q+ A +GF C
Sbjct: 2199 DLHFQEKRAGVFHLQATSGPYGLNFSEAEAACEAQGAVLASFPQLSAAQQLGFHLC 2254
>gi|14110414 heterogeneous nuclear ribonucleoprotein D isoform c
[Homo sapiens]
Length = 306
Score = 30.0 bits (66), Expect = 0.63
Identities = 26/84 (30%), Positives = 34/84 (40%), Gaps = 9/84 (10%)
Query: 56 FNSTLPTMAQMEKAL-SIGFETCSLHCSQQSKKVWAEEKASDQQWQW-SCGGQKAKWTQR 113
F P MEK ++G C + KV ++ QQ QW S GG + R
Sbjct: 230 FKEEEPVKKIMEKKYHNVGLSKCEI-------KVAMSKEQYQQQQQWGSRGGFAGRARGR 282
Query: 114 RGQQVSGNGAFGEQGVVRNSRPVY 137
G Q SG G +G +NS Y
Sbjct: 283 GGDQQSGYGKVSRRGGHQNSYKPY 306
>gi|51477708 heterogeneous nuclear ribonucleoprotein D isoform d
[Homo sapiens]
Length = 287
Score = 30.0 bits (66), Expect = 0.63
Identities = 26/84 (30%), Positives = 34/84 (40%), Gaps = 9/84 (10%)
Query: 56 FNSTLPTMAQMEKAL-SIGFETCSLHCSQQSKKVWAEEKASDQQWQW-SCGGQKAKWTQR 113
F P MEK ++G C + KV ++ QQ QW S GG + R
Sbjct: 211 FKEEEPVKKIMEKKYHNVGLSKCEI-------KVAMSKEQYQQQQQWGSRGGFAGRARGR 263
Query: 114 RGQQVSGNGAFGEQGVVRNSRPVY 137
G Q SG G +G +NS Y
Sbjct: 264 GGDQQSGYGKVSRRGGHQNSYKPY 287
>gi|16554449 zonadhesin isoform 3 [Homo sapiens]
Length = 2812
Score = 30.0 bits (66), Expect = 0.63
Identities = 20/60 (33%), Positives = 25/60 (41%), Gaps = 4/60 (6%)
Query: 69 ALSIGFETCSLHCSQQSKKVWAEEKASDQQWQWSCGGQKAKWTQRRGQQVSGNGAFGEQG 128
ALSI +C+ C Q+ D W W AKWTQ++G SG G G
Sbjct: 194 ALSIRRGSCNRVCMMQTCSFDIPNDLCD--WTWIPTASGAKWTQKKGS--SGKPGVGPDG 249
>gi|27881494 zonadhesin isoform 6 [Homo sapiens]
Length = 2721
Score = 30.0 bits (66), Expect = 0.63
Identities = 20/60 (33%), Positives = 25/60 (41%), Gaps = 4/60 (6%)
Query: 69 ALSIGFETCSLHCSQQSKKVWAEEKASDQQWQWSCGGQKAKWTQRRGQQVSGNGAFGEQG 128
ALSI +C+ C Q+ D W W AKWTQ++G SG G G
Sbjct: 194 ALSIRRGSCNRVCMMQTCSFDIPNDLCD--WTWIPTASGAKWTQKKGS--SGKPGVGPDG 249
>gi|61743980 stabilin 2 precursor [Homo sapiens]
Length = 2551
Score = 29.6 bits (65), Expect = 0.83
Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 22 IDLNITCRFAGVFHVEKN-GRYSISRTEAADLCKAFNSTLPTMAQMEKALSIGFETCS 78
+DL+ GVFH+ G+Y ++ +A + C +T+ T Q+ A + CS
Sbjct: 2188 VDLHFQDTTVGVFHLRSPLGQYKLTFDKAREACANEAATMATYNQLSYAQKAKYHLCS 2245
>gi|126090892 aggrecan isoform 2 precursor [Homo sapiens]
Length = 2416
Score = 28.5 bits (62), Expect = 1.8
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 48 EAADLCKAFNSTLPTMAQMEKALSIGFETC 77
EA + C++ N+TL T Q+ A S G + C
Sbjct: 593 EALEFCESHNATLATTGQLYAAWSRGLDKC 622
Score = 27.7 bits (60), Expect = 3.1
Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Query: 33 VFHVEKNG-RYSISRTEAADLCKAFNSTLPTMAQMEKALSIGFETC 77
VFH RYS++ EA C + + + Q++ A G+E C
Sbjct: 479 VFHYRPGPTRYSLTFEEAQQACLRTGAVIASPEQLQAAYEAGYEQC 524
>gi|126090883 aggrecan isoform 1 precursor [Homo sapiens]
Length = 2317
Score = 28.5 bits (62), Expect = 1.8
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 48 EAADLCKAFNSTLPTMAQMEKALSIGFETC 77
EA + C++ N+TL T Q+ A S G + C
Sbjct: 593 EALEFCESHNATLATTGQLYAAWSRGLDKC 622
Score = 27.7 bits (60), Expect = 3.1
Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Query: 33 VFHVEKNG-RYSISRTEAADLCKAFNSTLPTMAQMEKALSIGFETC 77
VFH RYS++ EA C + + + Q++ A G+E C
Sbjct: 479 VFHYRPGPTRYSLTFEEAQQACLRTGAVIASPEQLQAAYEAGYEQC 524
>gi|112382250 spectrin, beta, non-erythrocytic 1 isoform 1 [Homo
sapiens]
Length = 2364
Score = 28.5 bits (62), Expect = 1.8
Identities = 21/54 (38%), Positives = 26/54 (48%), Gaps = 12/54 (22%)
Query: 83 QQSKKVWAEEKASDQQWQWSCGGQKAKWTQRRGQQVSGNGAFGEQGVVRNSRPV 136
+ S KV +EE S QQW S +G+QVS NG EQG R + V
Sbjct: 2104 EPSTKV-SEEAESQQQWDTS-----------KGEQVSQNGLPAEQGSPRMAETV 2145
>gi|112382252 spectrin, beta, non-erythrocytic 1 isoform 2 [Homo
sapiens]
Length = 2155
Score = 28.1 bits (61), Expect = 2.4
Identities = 21/51 (41%), Positives = 25/51 (49%), Gaps = 12/51 (23%)
Query: 83 QQSKKVWAEEKASDQQWQWSCGGQKAKWTQRRGQQVSGNGAFGEQGVVRNS 133
+ S KV +EE S QQW S +G+QVS NG EQG R S
Sbjct: 2091 EPSTKV-SEEAESQQQWDTS-----------KGEQVSQNGLPAEQGSPRVS 2129
>gi|118600983 chondroitin sulfate proteoglycan 3 [Homo sapiens]
Length = 1321
Score = 27.7 bits (60), Expect = 3.1
Identities = 12/46 (26%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 33 VFHVEK-NGRYSISRTEAADLCKAFNSTLPTMAQMEKALSIGFETC 77
VFH RY+++ EA + C+ ++ + ++ A GF+ C
Sbjct: 161 VFHYRSARDRYALTFAEAQEACRLSSAIIAAPRHLQAAFEDGFDNC 206
>gi|239744417 PREDICTED: similar to hCG2023245 [Homo sapiens]
Length = 364
Score = 27.3 bits (59), Expect = 4.1
Identities = 25/78 (32%), Positives = 35/78 (44%), Gaps = 3/78 (3%)
Query: 60 LPTMAQMEKALSIGFET-CSLHCSQQSKKVWAEEKASDQQWQWSCGGQKAKWTQRRGQQV 118
LP A+ IG + C+L + + + W E +A Q C GQ + +R G V
Sbjct: 105 LPPSAKSINVSGIGRPSGCNLVGAGRRCRAWPE-RAWPQAGDSDCLGQGRRAQRRPGPGV 163
Query: 119 SGNGAFGEQGVVR-NSRP 135
S GA G+Q N RP
Sbjct: 164 SAVGASGQQRAPESNERP 181
>gi|4502901 clathrin, light polypeptide isoform a [Homo sapiens]
Length = 211
Score = 27.3 bits (59), Expect = 4.1
Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
Query: 90 AEEKASDQQWQWSCGGQKAKWTQRRGQQVSG---NGAFGEQGVVRNSR 134
A K ++Q+W+ +W QR+ +QV N E+ V+ S+
Sbjct: 119 AASKVTEQEWREKAKKDLEEWNQRQSEQVEKNKINNRASEEAFVKESK 166
>gi|229576906 F-box and WD repeat domain containing 12 isoform 3
[Homo sapiens]
Length = 445
Score = 26.9 bits (58), Expect = 5.4
Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Query: 35 HVEKNGRYSISRTEAADLCKAFNSTLPTMAQMEKALSIGFETCSLHCSQQSKKVWA 90
++ K+G + + A D+ + TLP + + K + + LHCS K V+A
Sbjct: 177 YLTKDGPFLMVGDAAGDI---YTFTLPGLRDVSKVTAFQYGIVLLHCSPDKKWVFA 229
>gi|229576873 F-box and WD repeat domain containing 12 isoform 1
[Homo sapiens]
Length = 464
Score = 26.9 bits (58), Expect = 5.4
Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Query: 35 HVEKNGRYSISRTEAADLCKAFNSTLPTMAQMEKALSIGFETCSLHCSQQSKKVWA 90
++ K+G + + A D+ + TLP + + K + + LHCS K V+A
Sbjct: 196 YLTKDGPFLMVGDAAGDI---YTFTLPGLRDVSKVTAFQYGIVLLHCSPDKKWVFA 248
>gi|6005995 clathrin, light polypeptide isoform b [Homo sapiens]
Length = 229
Score = 26.9 bits (58), Expect = 5.4
Identities = 10/32 (31%), Positives = 17/32 (53%)
Query: 90 AEEKASDQQWQWSCGGQKAKWTQRRGQQVSGN 121
A K ++Q+W+ +W QR+ +QV N
Sbjct: 119 AASKVTEQEWREKAKKDLEEWNQRQSEQVEKN 150
>gi|62953134 FLYWCH-type zinc finger 1 isoform a [Homo sapiens]
Length = 715
Score = 26.9 bits (58), Expect = 5.4
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 60 LPTMAQMEKALSIGFETCSLHCSQQSKKVWAEEK 93
LPT AQ E I + C CS +S++++ + K
Sbjct: 673 LPTTAQQEDPEKIQVQLCFKTCSPESQQIYGDIK 706
>gi|187607300 versican isoform 2 [Homo sapiens]
Length = 655
Score = 26.2 bits (56), Expect = 9.1
Identities = 13/45 (28%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 33 VFHVEKNGRYSISRTEAADLCKAFNSTLPTMAQMEKALSIGFETC 77
VFH+ +++ EAA C+ ++ L T+ +++ A GF+ C
Sbjct: 252 VFHLTVPSKFTFE--EAAKECENQDARLATVGELQAAWRNGFDQC 294
>gi|21361116 versican isoform 1 [Homo sapiens]
Length = 3396
Score = 26.2 bits (56), Expect = 9.1
Identities = 13/45 (28%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 33 VFHVEKNGRYSISRTEAADLCKAFNSTLPTMAQMEKALSIGFETC 77
VFH+ +++ EAA C+ ++ L T+ +++ A GF+ C
Sbjct: 252 VFHLTVPSKFTFE--EAAKECENQDARLATVGELQAAWRNGFDQC 294
>gi|239755571 PREDICTED: hypothetical protein [Homo sapiens]
Length = 261
Score = 26.2 bits (56), Expect = 9.1
Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Query: 77 CSLHCSQQSKKVWAEEKASDQQWQWSCGGQKAKWTQRRGQQVSGNGAFGEQGVVR-NSRP 135
C+L + + + W E +A Q C GQ + +R G VS GA G+Q N RP
Sbjct: 20 CNLVGAGRRCRAWPE-RAWPQAGDSDCLGQGRRAQRRPGPGVSAVGASGQQRAPESNERP 78
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.129 0.430
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,485,444
Number of Sequences: 37866
Number of extensions: 219439
Number of successful extensions: 561
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 534
Number of HSP's gapped (non-prelim): 37
length of query: 139
length of database: 18,247,518
effective HSP length: 92
effective length of query: 47
effective length of database: 14,763,846
effective search space: 693900762
effective search space used: 693900762
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.