CD44 30950

Name: CD44	Sequence: fasta or formatted (361aa)		NCBI GI: 48255941
Description: CD44 antigen isoform 4 precursor		Referenced in: Extracellular Matrix
Other entries for this name: alt prot [742aa] CD44 antigen isoform 1 precursor alt prot [699aa] CD44 antigen isoform 2 precursor alt prot [493aa] CD44 antigen isoform 3 precursor alt prot [139aa] CD44 antigen isoform 5 precursor
Composition: Amino acid Percentage Count Longest homopolymer A alanine 6.6 24 2 C cysteine 2.5 9 1 D aspartate 6.4 23 3 E glutamate 5.5 20 2 F phenylalanine 3.3 12 1 G glycine 7.5 27 2 H histidine 3.0 11 1 I isoleucine 6.9 25 2 K lysine 3.3 12 3 L leucine 5.8 21 2 M methionine 1.7 6 1 N asparagine 5.5 20 2 P proline 5.8 21 2 Q glutamine 3.0 11 1 R arginine 4.7 17 3 S serine 10.2 37 3 T threonine 8.6 31 2 V valine 5.3 19 2 W tryptophan 1.4 5 2 Y tyrosine 2.8 10 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 CD44 antigen isoform 4 precursor CD44 0.616 CD44 antigen isoform 3 precursor CD44 0.616 CD44 antigen isoform 2 precursor CD44 0.616 CD44 antigen isoform 1 precursor CD44 0.195 CD44 antigen isoform 5 precursor LYVE1 0.072 lymphatic vessel endothelial hyaluronan receptor 1 [... TNFAIP6 0.054 tumor necrosis factor, alpha-induced protein 6 precu... STAB1 0.038 stabilin 1 precursor ACAN 0.026 aggrecan isoform 2 precursor ACAN 0.026 aggrecan isoform 1 precursor VCAN 0.017 versican isoform 2 VCAN 0.017 versican isoform 1 SPN 0.014 sialophorin SPN 0.014 sialophorin BCAN 0.014 brevican isoform 2 BCAN 0.014 brevican isoform 1 NCAN 0.013 chondroitin sulfate proteoglycan 3 DSPP 0.011 dentin sialophosphoprotein preproprotein MUC17 0.011 mucin 17 PCDH21 0.010 protocadherin 21 precursor WTAP 0.010 Wilms' tumour 1-associating protein isoform 1 RBM23 0.010 RNA binding motif protein 23 isoform 3 RBM23 0.010 RNA binding motif protein 23 isoform 2 LOC100133915 0.008 PREDICTED: hypothetical protein HAPLN3 0.007 hyaluronan and proteoglycan link protein 3 NOTCH2 0.007 notch 2 preproprotein C20orf112 0.006 hypothetical protein LOC140688 PCDH9 0.006 protocadherin 9 isoform 2 precursor SDK1 0.006 sidekick 1 PCDH9 0.006 protocadherin 9 isoform 1 precursor Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.