CD44 30947

Name: CD44	Sequence: fasta or formatted (742aa)		NCBI GI: 48255935
Description: CD44 antigen isoform 1 precursor		Referenced in: Extracellular Matrix
Other entries for this name: alt prot [699aa] CD44 antigen isoform 2 precursor alt prot [493aa] CD44 antigen isoform 3 precursor alt prot [361aa] CD44 antigen isoform 4 precursor alt prot [139aa] CD44 antigen isoform 5 precursor
Composition: Amino acid Percentage Count Longest homopolymer A alanine 5.7 42 3 C cysteine 1.2 9 1 D aspartate 6.2 46 3 E glutamate 6.7 50 4 F phenylalanine 3.1 23 2 G glycine 6.9 51 2 H histidine 4.6 34 2 I isoleucine 4.6 34 2 K lysine 2.7 20 3 L leucine 5.1 38 2 M methionine 1.9 14 1 N asparagine 5.5 41 2 P proline 5.9 44 2 Q glutamine 3.6 27 2 R arginine 4.6 34 3 S serine 11.7 87 3 T threonine 12.3 91 3 V valine 3.8 28 2 W tryptophan 2.0 15 2 Y tyrosine 1.9 14 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 CD44 antigen isoform 1 precursor CD44 0.925 CD44 antigen isoform 2 precursor CD44 0.342 CD44 antigen isoform 3 precursor CD44 0.292 CD44 antigen isoform 4 precursor CD44 0.092 CD44 antigen isoform 5 precursor LYVE1 0.034 lymphatic vessel endothelial hyaluronan receptor 1 [... TNFAIP6 0.026 tumor necrosis factor, alpha-induced protein 6 precu... DSPP 0.022 dentin sialophosphoprotein preproprotein LOC100130716 0.021 PREDICTED: similar to mucin 11 MUC4 0.020 mucin 4 isoform a MUC5AC 0.020 mucin 5AC MUC5B 0.018 mucin 5, subtype B, tracheobronchial STAB1 0.018 stabilin 1 precursor FLG 0.018 filaggrin LOC729792 0.017 PREDICTED: hypothetical protein LOC729792 0.017 PREDICTED: hypothetical protein LOC729792 0.017 PREDICTED: hypothetical protein LOC100294501 0.017 PREDICTED: hypothetical protein LOC100294238 0.017 PREDICTED: hypothetical protein LOC100294204 0.017 PREDICTED: hypothetical protein LOC100294136 0.017 PREDICTED: hypothetical protein LOC100294091 0.017 PREDICTED: hypothetical protein LOC730401 0.017 PREDICTED: hypothetical protein LOC100130716 0.017 PREDICTED: similar to Mucin-12 MUC12 0.017 PREDICTED: mucin 12 MUC17 0.017 mucin 17 LOC100294249 0.017 PREDICTED: hypothetical protein XP_002344067 MUC12 0.017 PREDICTED: mucin 12, cell surface associated MUC21 0.016 mucin 21 FLG2 0.015 filaggrin family member 2 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.