Guide to the Human Genome
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Name: PPARA Sequence: fasta or formatted (468aa) NCBI GI: 50348666
Description:

peroxisome proliferative activated receptor, alpha

Referenced in:

Nuclear Receptors
Peroxisomes

Other entries for this name:
alt mRNA [468aa] peroxisome proliferative activated receptor, alpha
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.6         31           2
 C cysteine            4.1         19           2
 D aspartate           5.8         27           2
 E glutamate           7.3         34           2
 F phenylalanine       4.7         22           2
 G glycine             6.0         28           1
 H histidine           2.8         13           1
 I isoleucine          6.2         29           2
 K lysine              7.1         33           2
 L leucine            10.0         47           2
 M methionine          3.2         15           1
 N asparagine          4.1         19           2
 P proline             4.3         20           2
 Q glutamine           3.4         16           1
 R arginine            4.1         19           2
 S serine              7.9         37           2
 T threonine           3.8         18           1
 V valine              5.8         27           2
 W tryptophan          0.0          0           0
 Y tyrosine            3.0         14           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   peroxisome proliferative activated receptor, alpha [... 
PPARA                 1.000   peroxisome proliferative activated receptor, alpha [H...
PPARD                 0.580   peroxisome proliferative activated receptor, delta is...
PPARG                 0.526   peroxisome proliferative activated receptor gamma i...
PPARG                 0.526   peroxisome proliferative activated receptor gamma is...
PPARG                 0.526   peroxisome proliferative activated receptor gamma i...
PPARG                 0.526   peroxisome proliferative activated receptor gamma i...
PPARD                 0.452   peroxisome proliferative activated receptor, delta i...
RARB                  0.171   retinoic acid receptor, beta isoform 1 
RARA                  0.168   retinoic acid receptor, alpha isoform 1 
RARA                  0.168   retinoic acid receptor, alpha isoform 1 
RARG                  0.168   retinoic acid receptor, gamma isoform 2 
RARG                  0.167   retinoic acid receptor, gamma isoform 1 
RARA                  0.166   retinoic acid receptor, alpha isoform 2 
NR1H3                 0.142   nuclear receptor subfamily 1, group H, member 3 iso...
NR1H3                 0.142   nuclear receptor subfamily 1, group H, member 3 iso...
RXRG                  0.140   retinoid X receptor, gamma isoform a 
RXRA                  0.137   retinoid X receptor, alpha 
RXRB                  0.128   retinoid X receptor, beta 
NR2F2                 0.121   nuclear receptor subfamily 2, group F, member 2 isof...
NR1D1                 0.121   nuclear receptor subfamily 1, group D, member 1 [Hom...
NR2F1                 0.121   nuclear receptor subfamily 2, group F, member 1 [Homo...
VDR                   0.120   vitamin D (1,25-dihydroxyvitamin D3) receptor 
VDR                   0.120   vitamin D (1,25-dihydroxyvitamin D3) receptor 
NR1D2                 0.113   nuclear receptor subfamily 1, group D, member 2 iso...
RARB                  0.113   retinoic acid receptor, beta isoform 2 
NR1D2                 0.113   nuclear receptor subfamily 1, group D, member 2 iso...
HNF4A                 0.108   hepatocyte nuclear factor 4 alpha isoform f 
ESRRG                 0.103   estrogen-related receptor gamma isoform 1 
ESRRG                 0.102   estrogen-related receptor gamma isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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