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Search of human proteins with 48255903
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|48255903 beta-synuclein [Homo sapiens]
(134 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|48255903 beta-synuclein [Homo sapiens] 263 4e-71
gi|4507111 beta-synuclein [Homo sapiens] 263 4e-71
gi|225690604 alpha-synuclein isoform NACP140 [Homo sapiens] 157 3e-39
gi|225690602 alpha-synuclein isoform NACP140 [Homo sapiens] 157 3e-39
gi|4507109 alpha-synuclein isoform NACP140 [Homo sapiens] 157 3e-39
gi|6806898 alpha-synuclein isoform NACP112 [Homo sapiens] 131 2e-31
gi|209693439 synuclein, gamma (breast cancer-specific protein 1)... 116 6e-27
gi|4505419 nucleolar protein 3 [Homo sapiens] 35 0.024
gi|211904182 DDB1 and CUL4 associated factor 8-like 2 [Homo sapi... 33 0.069
gi|91208418 transcription elongation regulator 1 isoform 2 [Homo... 32 0.12
gi|21327715 transcription elongation regulator 1 isoform 1 [Homo... 32 0.12
gi|110349719 titin isoform N2-A [Homo sapiens] 32 0.15
gi|239746922 PREDICTED: similar to cancer/testis antigen family ... 32 0.15
gi|239752405 PREDICTED: similar to cancer/testis antigen family ... 32 0.20
gi|113430055 PREDICTED: similar to cancer/testis antigen family ... 32 0.20
gi|62000702 diacylglycerol kinase kappa [Homo sapiens] 32 0.20
gi|14327896 cyclin B1 [Homo sapiens] 31 0.26
gi|192807286 zinc finger and BTB domain containing 4 [Homo sapiens] 31 0.26
gi|192807284 zinc finger and BTB domain containing 4 [Homo sapiens] 31 0.26
gi|224591404 cancer/testis antigen family 147, member B1 [Homo s... 31 0.34
gi|189409130 zinc finger E-box binding homeobox 1 isoform a [Hom... 30 0.44
gi|189409128 zinc finger E-box binding homeobox 1 isoform b [Hom... 30 0.44
gi|100816397 MYST histone acetyltransferase (monocytic leukemia)... 30 0.76
gi|5031703 Ras-GTPase-activating protein SH3-domain-binding prot... 30 0.76
gi|38327552 Ras-GTPase-activating protein SH3-domain-binding pro... 30 0.76
gi|114155142 nuclear pore complex-associated protein TPR [Homo s... 29 0.99
gi|239744995 PREDICTED: hypothetical protein XP_002343325 [Homo ... 29 1.3
gi|113204617 skeletal muscle ryanodine receptor isoform 2 [Homo ... 29 1.3
gi|113204615 skeletal muscle ryanodine receptor isoform 1 [Homo ... 29 1.3
gi|122937241 SH3 and multiple ankyrin repeat domains 3 [Homo sap... 29 1.3
>gi|48255903 beta-synuclein [Homo sapiens]
Length = 134
Score = 263 bits (671), Expect = 4e-71
Identities = 134/134 (100%), Positives = 134/134 (100%)
Query: 1 MDVFMKGLSMAKEGVVAAAEKTKQGVTEAAEKTKEGVLYVGSKTREGVVQGVASVAEKTK 60
MDVFMKGLSMAKEGVVAAAEKTKQGVTEAAEKTKEGVLYVGSKTREGVVQGVASVAEKTK
Sbjct: 1 MDVFMKGLSMAKEGVVAAAEKTKQGVTEAAEKTKEGVLYVGSKTREGVVQGVASVAEKTK 60
Query: 61 EQASHLGGAVFSGAGNIAAATGLVKREEFPTDLKPEEVAQEAAEEPLIEPLMEPEGESYE 120
EQASHLGGAVFSGAGNIAAATGLVKREEFPTDLKPEEVAQEAAEEPLIEPLMEPEGESYE
Sbjct: 61 EQASHLGGAVFSGAGNIAAATGLVKREEFPTDLKPEEVAQEAAEEPLIEPLMEPEGESYE 120
Query: 121 DPPQEEYQEYEPEA 134
DPPQEEYQEYEPEA
Sbjct: 121 DPPQEEYQEYEPEA 134
>gi|4507111 beta-synuclein [Homo sapiens]
Length = 134
Score = 263 bits (671), Expect = 4e-71
Identities = 134/134 (100%), Positives = 134/134 (100%)
Query: 1 MDVFMKGLSMAKEGVVAAAEKTKQGVTEAAEKTKEGVLYVGSKTREGVVQGVASVAEKTK 60
MDVFMKGLSMAKEGVVAAAEKTKQGVTEAAEKTKEGVLYVGSKTREGVVQGVASVAEKTK
Sbjct: 1 MDVFMKGLSMAKEGVVAAAEKTKQGVTEAAEKTKEGVLYVGSKTREGVVQGVASVAEKTK 60
Query: 61 EQASHLGGAVFSGAGNIAAATGLVKREEFPTDLKPEEVAQEAAEEPLIEPLMEPEGESYE 120
EQASHLGGAVFSGAGNIAAATGLVKREEFPTDLKPEEVAQEAAEEPLIEPLMEPEGESYE
Sbjct: 61 EQASHLGGAVFSGAGNIAAATGLVKREEFPTDLKPEEVAQEAAEEPLIEPLMEPEGESYE 120
Query: 121 DPPQEEYQEYEPEA 134
DPPQEEYQEYEPEA
Sbjct: 121 DPPQEEYQEYEPEA 134
>gi|225690604 alpha-synuclein isoform NACP140 [Homo sapiens]
Length = 140
Score = 157 bits (396), Expect = 3e-39
Identities = 90/146 (61%), Positives = 110/146 (75%), Gaps = 18/146 (12%)
Query: 1 MDVFMKGLSMAKEGVVAAAEKTKQGVTEAAEKTKEGVLYVGSKTREGVVQGVASVAEKTK 60
MDVFMKGLS AKEGVVAAAEKTKQGV EAA KTKEGVLYVGSKT+EGVV GVA+VAEKTK
Sbjct: 1 MDVFMKGLSKAKEGVVAAAEKTKQGVAEAAGKTKEGVLYVGSKTKEGVVHGVATVAEKTK 60
Query: 61 EQASHLGGAVFS-----------GAGNIAAATGLVKREEFPTDLKPEEVAQEAAEEPLIE 109
EQ +++GGAV + GAG+IAAATG VK+++ K EE A +E ++E
Sbjct: 61 EQVTNVGGAVVTGVTAVAQKTVEGAGSIAAATGFVKKDQLG---KNEE---GAPQEGILE 114
Query: 110 PL-MEPEGESYEDPPQEEYQEYEPEA 134
+ ++P+ E+YE P +E YQ+YEPEA
Sbjct: 115 DMPVDPDNEAYEMPSEEGYQDYEPEA 140
>gi|225690602 alpha-synuclein isoform NACP140 [Homo sapiens]
Length = 140
Score = 157 bits (396), Expect = 3e-39
Identities = 90/146 (61%), Positives = 110/146 (75%), Gaps = 18/146 (12%)
Query: 1 MDVFMKGLSMAKEGVVAAAEKTKQGVTEAAEKTKEGVLYVGSKTREGVVQGVASVAEKTK 60
MDVFMKGLS AKEGVVAAAEKTKQGV EAA KTKEGVLYVGSKT+EGVV GVA+VAEKTK
Sbjct: 1 MDVFMKGLSKAKEGVVAAAEKTKQGVAEAAGKTKEGVLYVGSKTKEGVVHGVATVAEKTK 60
Query: 61 EQASHLGGAVFS-----------GAGNIAAATGLVKREEFPTDLKPEEVAQEAAEEPLIE 109
EQ +++GGAV + GAG+IAAATG VK+++ K EE A +E ++E
Sbjct: 61 EQVTNVGGAVVTGVTAVAQKTVEGAGSIAAATGFVKKDQLG---KNEE---GAPQEGILE 114
Query: 110 PL-MEPEGESYEDPPQEEYQEYEPEA 134
+ ++P+ E+YE P +E YQ+YEPEA
Sbjct: 115 DMPVDPDNEAYEMPSEEGYQDYEPEA 140
>gi|4507109 alpha-synuclein isoform NACP140 [Homo sapiens]
Length = 140
Score = 157 bits (396), Expect = 3e-39
Identities = 90/146 (61%), Positives = 110/146 (75%), Gaps = 18/146 (12%)
Query: 1 MDVFMKGLSMAKEGVVAAAEKTKQGVTEAAEKTKEGVLYVGSKTREGVVQGVASVAEKTK 60
MDVFMKGLS AKEGVVAAAEKTKQGV EAA KTKEGVLYVGSKT+EGVV GVA+VAEKTK
Sbjct: 1 MDVFMKGLSKAKEGVVAAAEKTKQGVAEAAGKTKEGVLYVGSKTKEGVVHGVATVAEKTK 60
Query: 61 EQASHLGGAVFS-----------GAGNIAAATGLVKREEFPTDLKPEEVAQEAAEEPLIE 109
EQ +++GGAV + GAG+IAAATG VK+++ K EE A +E ++E
Sbjct: 61 EQVTNVGGAVVTGVTAVAQKTVEGAGSIAAATGFVKKDQLG---KNEE---GAPQEGILE 114
Query: 110 PL-MEPEGESYEDPPQEEYQEYEPEA 134
+ ++P+ E+YE P +E YQ+YEPEA
Sbjct: 115 DMPVDPDNEAYEMPSEEGYQDYEPEA 140
>gi|6806898 alpha-synuclein isoform NACP112 [Homo sapiens]
Length = 112
Score = 131 bits (329), Expect = 2e-31
Identities = 71/99 (71%), Positives = 81/99 (81%), Gaps = 11/99 (11%)
Query: 1 MDVFMKGLSMAKEGVVAAAEKTKQGVTEAAEKTKEGVLYVGSKTREGVVQGVASVAEKTK 60
MDVFMKGLS AKEGVVAAAEKTKQGV EAA KTKEGVLYVGSKT+EGVV GVA+VAEKTK
Sbjct: 1 MDVFMKGLSKAKEGVVAAAEKTKQGVAEAAGKTKEGVLYVGSKTKEGVVHGVATVAEKTK 60
Query: 61 EQASHLGGAVFS-----------GAGNIAAATGLVKREE 88
EQ +++GGAV + GAG+IAAATG VK+++
Sbjct: 61 EQVTNVGGAVVTGVTAVAQKTVEGAGSIAAATGFVKKDQ 99
>gi|209693439 synuclein, gamma (breast cancer-specific protein 1)
[Homo sapiens]
Length = 127
Score = 116 bits (290), Expect = 6e-27
Identities = 67/112 (59%), Positives = 78/112 (69%), Gaps = 15/112 (13%)
Query: 1 MDVFMKGLSMAKEGVVAAAEKTKQGVTEAAEKTKEGVLYVGSKTREGVVQGVASVAEKTK 60
MDVF KG S+AKEGVV A EKTKQGVTEAAEKTKEGV+YVG+KT+E VVQ V SVAEKTK
Sbjct: 1 MDVFKKGFSIAKEGVVGAVEKTKQGVTEAAEKTKEGVMYVGAKTKENVVQSVTSVAEKTK 60
Query: 61 EQASHLGGAVFSG-----------AGNIAAATGLVKREEFPTDLKPEEVAQE 101
EQA+ + AV S A NIA +G+V++E DL+P QE
Sbjct: 61 EQANAVSEAVVSSVNTVATKTVEEAENIAVTSGVVRKE----DLRPSAPQQE 108
>gi|4505419 nucleolar protein 3 [Homo sapiens]
Length = 208
Score = 34.7 bits (78), Expect = 0.024
Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
Query: 90 PTDLKPE---EVAQEAAEEPLIEPLMEPEGESYEDPPQEEYQEYEPE 133
P + +PE E ++EA EP EP +EPE E+ +P E + EPE
Sbjct: 150 PEEPEPELEAEASKEAEPEPEPEPELEPEAEAEPEPELEPEPDPEPE 196
>gi|211904182 DDB1 and CUL4 associated factor 8-like 2 [Homo
sapiens]
Length = 631
Score = 33.1 bits (74), Expect = 0.069
Identities = 35/132 (26%), Positives = 53/132 (40%), Gaps = 15/132 (11%)
Query: 12 KEGVVAAAEKTKQGVTEAAEKTKEGVLYVGSKTREGVVQGVASVAEKTKEQASHLGGAV- 70
+ G VAA E + + A + V GS +R+G AS ++ +Q S
Sbjct: 26 QSGAVAATEASSD-IDIATSELSVTVTGDGSDSRDGGFPNDASTENRSSDQESASEDIEL 84
Query: 71 --------FSGAGNIAAATGLVKREEFPTDLKPEEVAQEAAEEPLIEPLMEPEGESYEDP 122
F +G LV EE + + EE+ +E EE E E E E+
Sbjct: 85 ESLEDFEHFLMSGESLFHYPLVGEEETEREEEDEEIQEEGGEEE-----EEEEEEEEEEE 139
Query: 123 PQEEYQEYEPEA 134
+EE +E +P A
Sbjct: 140 EEEEEEEEQPRA 151
>gi|91208418 transcription elongation regulator 1 isoform 2 [Homo
sapiens]
Length = 1077
Score = 32.3 bits (72), Expect = 0.12
Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 4/49 (8%)
Query: 88 EFPTDLKPEEVAQEAAEEPLIEPLMEP---EGESYEDPPQEEYQEYEPE 133
E P +LK +E +E +EP+ EP EP E E EDP +E +E + E
Sbjct: 437 EKPQELKEKEKLEEKIKEPIKEPSEEPLPMETEE-EDPKEEPIKEIKEE 484
>gi|21327715 transcription elongation regulator 1 isoform 1 [Homo
sapiens]
Length = 1098
Score = 32.3 bits (72), Expect = 0.12
Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 4/49 (8%)
Query: 88 EFPTDLKPEEVAQEAAEEPLIEPLMEP---EGESYEDPPQEEYQEYEPE 133
E P +LK +E +E +EP+ EP EP E E EDP +E +E + E
Sbjct: 458 EKPQELKEKEKLEEKIKEPIKEPSEEPLPMETEE-EDPKEEPIKEIKEE 505
>gi|110349719 titin isoform N2-A [Homo sapiens]
Length = 33423
Score = 32.0 bits (71), Expect = 0.15
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 4/45 (8%)
Query: 94 KPEEVAQEAAEEPL----IEPLMEPEGESYEDPPQEEYQEYEPEA 134
K + V E+ EEP +EP EP + Y + P E+Y+E + EA
Sbjct: 9064 KEKRVFIESFEEPYDELEVEPYTEPFEQPYYEEPDEDYEEIKVEA 9108
Score = 31.2 bits (69), Expect = 0.26
Identities = 21/54 (38%), Positives = 25/54 (46%), Gaps = 4/54 (7%)
Query: 85 KREEFPTDLKPEEVAQEAA----EEPLIEPLMEPEGESYEDPPQEEYQEYEPEA 134
K E P PE+ EA E P E EPE + E+PP E +E EP A
Sbjct: 10636 KVPEVPKVAVPEKKVPEAIPPKPESPPPEVFEEPEEVALEEPPAEVVEEPEPAA 10689
Score = 28.9 bits (63), Expect = 1.3
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
Query: 85 KREEFP---TDLKPEEVAQEAAEEPLIEPLMEPEGESYEDPPQEEYQEYEP 132
KRE P + E+ EE + E E E YE+ +E++EYEP
Sbjct: 9711 KREPQPIKEVTIMEEKERAYTLEEEAVSVQREEEYEEYEEYDYKEFEEYEP 9761
Score = 28.1 bits (61), Expect = 2.2
Identities = 16/55 (29%), Positives = 26/55 (47%)
Query: 8 LSMAKEGVVAAAEKTKQGVTEAAEKTKEGVLYVGSKTREGVVQGVASVAEKTKEQ 62
++ +E V++A E+T Q T A + V + + V V A+K KEQ
Sbjct: 435 MARVREPVISAVEQTAQRTTTTAVHIQPAQEQVRKEAEKTAVTKVVVAADKAKEQ 489
Score = 27.7 bits (60), Expect = 2.9
Identities = 17/48 (35%), Positives = 23/48 (47%)
Query: 84 VKREEFPTDLKPEEVAQEAAEEPLIEPLMEPEGESYEDPPQEEYQEYE 131
V+ E P +L+PEEVA E +E + E E Y +E E E
Sbjct: 9894 VRVPEVPKELEPEEVAFEEEVVTHVEEYLVEEEEEYIHEEEEFITEEE 9941
>gi|239746922 PREDICTED: similar to cancer/testis antigen family
147, member B1 isoform 2 [Homo sapiens]
Length = 294
Score = 32.0 bits (71), Expect = 0.15
Identities = 23/43 (53%), Positives = 27/43 (62%), Gaps = 6/43 (13%)
Query: 87 EEFPTD-LKPEEVAQEAAEEPLIEPLMEP--EGESYEDPPQEE 126
EE PT+ EE+A+EAAEEP E EP E ES E+P EE
Sbjct: 210 EEKPTEEAAEEELAEEAAEEPAKE---EPAAEEESAEEPATEE 249
>gi|239752405 PREDICTED: similar to cancer/testis antigen family
147, member B1 [Homo sapiens]
Length = 290
Score = 31.6 bits (70), Expect = 0.20
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 88 EFPTD-LKPEEVAQEAAEEPLIEPLMEPEGESYEDPPQEEYQEYEPE 133
E PT+ EE+++EAAEEP E E + E QEE +Y+ E
Sbjct: 212 EKPTEEAAEEELSEEAAEEPRKEESAAEEESAQEPATQEEVTKYQHE 258
Score = 28.9 bits (63), Expect = 1.3
Identities = 23/76 (30%), Positives = 32/76 (42%), Gaps = 7/76 (9%)
Query: 66 LGGAVFSGAG-NIAAATGLVKREEFPTDLKP------EEVAQEAAEEPLIEPLMEPEGES 118
+G A G G + LV E P DL EE +EA+E+P E E E
Sbjct: 167 VGAAGPEGEGLGLLQEAALVPEPEVPADLAEMAREPAEEPTEEASEKPTEEAAEEELSEE 226
Query: 119 YEDPPQEEYQEYEPEA 134
+ P++E E E+
Sbjct: 227 AAEEPRKEESAAEEES 242
>gi|113430055 PREDICTED: similar to cancer/testis antigen family
147, member B1 isoform 1 [Homo sapiens]
Length = 284
Score = 31.6 bits (70), Expect = 0.20
Identities = 29/75 (38%), Positives = 34/75 (45%), Gaps = 17/75 (22%)
Query: 66 LGGAVFSGAG-NIAAATGLVKREEFPTDLKP-----------EEVAQEAAEEPLIEPLME 113
+G A G G + LV E P DL EE+A+EAAEEP E E
Sbjct: 168 VGAAGPEGEGLGLLQEAALVPEPEVPADLAEMAREPAEEPAEEELAEEAAEEPAKE---E 224
Query: 114 P--EGESYEDPPQEE 126
P E ES E+P EE
Sbjct: 225 PAAEEESAEEPATEE 239
>gi|62000702 diacylglycerol kinase kappa [Homo sapiens]
Length = 1271
Score = 31.6 bits (70), Expect = 0.20
Identities = 18/44 (40%), Positives = 19/44 (43%)
Query: 90 PTDLKPEEVAQEAAEEPLIEPLMEPEGESYEDPPQEEYQEYEPE 133
PT E A E A EP EP EP E +P E E PE
Sbjct: 81 PTPEPATEPASEPAPEPATEPAPEPATEPAPEPAPEPATESAPE 124
Score = 29.6 bits (65), Expect = 0.76
Identities = 17/37 (45%), Positives = 18/37 (48%)
Query: 97 EVAQEAAEEPLIEPLMEPEGESYEDPPQEEYQEYEPE 133
E A E A EP EP EP ES +P E E PE
Sbjct: 100 EPAPEPATEPAPEPAPEPATESAPEPTPEPALESVPE 136
Score = 29.3 bits (64), Expect = 0.99
Identities = 17/44 (38%), Positives = 18/44 (40%)
Query: 90 PTDLKPEEVAQEAAEEPLIEPLMEPEGESYEDPPQEEYQEYEPE 133
P E A E A EP EP EP E +P E E PE
Sbjct: 85 PATEPASEPAPEPATEPAPEPATEPAPEPAPEPATESAPEPTPE 128
Score = 26.9 bits (58), Expect = 4.9
Identities = 15/37 (40%), Positives = 16/37 (43%)
Query: 97 EVAQEAAEEPLIEPLMEPEGESYEDPPQEEYQEYEPE 133
E E A EP EP EP E +P E E PE
Sbjct: 80 EPTPEPATEPASEPAPEPATEPAPEPATEPAPEPAPE 116
Score = 26.6 bits (57), Expect = 6.4
Identities = 18/47 (38%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Query: 88 EFPTDLKPEEVAQEAAEEPLIEPLMEPEGESYEDPPQEEYQEYEPEA 134
E T+ PE A E A EP EP EP E +P E E E+
Sbjct: 76 ELYTEPTPEP-ATEPASEPAPEPATEPAPEPATEPAPEPAPEPATES 121
Score = 26.6 bits (57), Expect = 6.4
Identities = 16/37 (43%), Positives = 17/37 (45%)
Query: 97 EVAQEAAEEPLIEPLMEPEGESYEDPPQEEYQEYEPE 133
E A E A E EP EP ES +P E E PE
Sbjct: 112 EPAPEPATESAPEPTPEPALESVPEPAPELTPEVAPE 148
>gi|14327896 cyclin B1 [Homo sapiens]
Length = 433
Score = 31.2 bits (69), Expect = 0.26
Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Query: 79 AATGLVKREEFPTDLKPEEVAQEAAEEPLIEPLMEPEGESYEDPPQEEYQEYEP 132
+ATG V ++ P KP E P+ EP+ EPE E +P +EE EP
Sbjct: 69 SATGKVIDKKLP---KPLEKVPMLVPVPVSEPVPEPEPEPEPEPVKEEKLSPEP 119
>gi|192807286 zinc finger and BTB domain containing 4 [Homo sapiens]
Length = 1013
Score = 31.2 bits (69), Expect = 0.26
Identities = 20/52 (38%), Positives = 26/52 (50%), Gaps = 7/52 (13%)
Query: 83 LVKREEFPTDLKPEEVAQEAAEEPLIEPLMEPEGESYEDPPQEEYQEYEPEA 134
+VKR TDL+P E++ E EE E E ED +EE E E +A
Sbjct: 613 IVKRRISETDLRPGELSGEEMEE-------SEEDEEEEDEEEEEEDEEESKA 657
>gi|192807284 zinc finger and BTB domain containing 4 [Homo sapiens]
Length = 1013
Score = 31.2 bits (69), Expect = 0.26
Identities = 20/52 (38%), Positives = 26/52 (50%), Gaps = 7/52 (13%)
Query: 83 LVKREEFPTDLKPEEVAQEAAEEPLIEPLMEPEGESYEDPPQEEYQEYEPEA 134
+VKR TDL+P E++ E EE E E ED +EE E E +A
Sbjct: 613 IVKRRISETDLRPGELSGEEMEE-------SEEDEEEEDEEEEEEDEEESKA 657
>gi|224591404 cancer/testis antigen family 147, member B1 [Homo
sapiens]
Length = 299
Score = 30.8 bits (68), Expect = 0.34
Identities = 26/98 (26%), Positives = 43/98 (43%), Gaps = 1/98 (1%)
Query: 38 LYVGSKTREGVVQGVASVAEKTKEQASHLGGAVFSGAGNIAAATGLVKREEFPTDLKPEE 97
L G+ EG G+ A +E AS AV + +A +E P + EE
Sbjct: 175 LGAGAAAPEGEGLGLIQEAASVQEAASVPEPAVPADLAEMAREPAEEAADEKPPEEAAEE 234
Query: 98 -VAQEAAEEPLIEPLMEPEGESYEDPPQEEYQEYEPEA 134
+ +EA EEP E E + E+ + + ++++ EA
Sbjct: 235 KLTEEATEEPAAEEPTSEEAVAPEEVTKSQPEKWDEEA 272
>gi|189409130 zinc finger E-box binding homeobox 1 isoform a [Homo
sapiens]
Length = 1108
Score = 30.4 bits (67), Expect = 0.44
Identities = 17/69 (24%), Positives = 32/69 (46%)
Query: 65 HLGGAVFSGAGNIAAATGLVKREEFPTDLKPEEVAQEAAEEPLIEPLMEPEGESYEDPPQ 124
H+G G+ L + E+ ++ + EE +E E + +P+G+ E+ +
Sbjct: 994 HVGARASPSQGDSDERESLTREEDEDSEKEEEEEDKEMEELQEEKECEKPQGDEEEEEEE 1053
Query: 125 EEYQEYEPE 133
EE +E E E
Sbjct: 1054 EEVEEEEVE 1062
>gi|189409128 zinc finger E-box binding homeobox 1 isoform b [Homo
sapiens]
Length = 1124
Score = 30.4 bits (67), Expect = 0.44
Identities = 17/69 (24%), Positives = 32/69 (46%)
Query: 65 HLGGAVFSGAGNIAAATGLVKREEFPTDLKPEEVAQEAAEEPLIEPLMEPEGESYEDPPQ 124
H+G G+ L + E+ ++ + EE +E E + +P+G+ E+ +
Sbjct: 1010 HVGARASPSQGDSDERESLTREEDEDSEKEEEEEDKEMEELQEEKECEKPQGDEEEEEEE 1069
Query: 125 EEYQEYEPE 133
EE +E E E
Sbjct: 1070 EEVEEEEVE 1078
>gi|100816397 MYST histone acetyltransferase (monocytic leukemia) 4
[Homo sapiens]
Length = 2073
Score = 29.6 bits (65), Expect = 0.76
Identities = 17/49 (34%), Positives = 24/49 (48%)
Query: 85 KREEFPTDLKPEEVAQEAAEEPLIEPLMEPEGESYEDPPQEEYQEYEPE 133
+REE + P E E+ LI+P E E E E+ +EE + E E
Sbjct: 1325 RREETCAPVSPNTSPGEKPEDDLIKPEEEEEEEEEEEEEEEEEEGEEEE 1373
>gi|5031703 Ras-GTPase-activating protein SH3-domain-binding protein
[Homo sapiens]
Length = 466
Score = 29.6 bits (65), Expect = 0.76
Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Query: 96 EEVAQEAAEEPLIEPLMEPEGESYEDPPQE---EYQEYEPE 133
+ V EE L EP+ EPE + +P QE E QE +PE
Sbjct: 176 QAVVSNDMEEHLEEPVAEPEPDPEPEPEQEPVSEIQEEKPE 216
Score = 27.7 bits (60), Expect = 2.9
Identities = 14/38 (36%), Positives = 18/38 (47%)
Query: 96 EEVAQEAAEEPLIEPLMEPEGESYEDPPQEEYQEYEPE 133
EE E +P EP EP E E+ P+ +E PE
Sbjct: 188 EEPVAEPEPDPEPEPEQEPVSEIQEEKPEPVLEETAPE 225
>gi|38327552 Ras-GTPase-activating protein SH3-domain-binding
protein [Homo sapiens]
Length = 466
Score = 29.6 bits (65), Expect = 0.76
Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Query: 96 EEVAQEAAEEPLIEPLMEPEGESYEDPPQE---EYQEYEPE 133
+ V EE L EP+ EPE + +P QE E QE +PE
Sbjct: 176 QAVVSNDMEEHLEEPVAEPEPDPEPEPEQEPVSEIQEEKPE 216
Score = 27.7 bits (60), Expect = 2.9
Identities = 14/38 (36%), Positives = 18/38 (47%)
Query: 96 EEVAQEAAEEPLIEPLMEPEGESYEDPPQEEYQEYEPE 133
EE E +P EP EP E E+ P+ +E PE
Sbjct: 188 EEPVAEPEPDPEPEPEQEPVSEIQEEKPEPVLEETAPE 225
>gi|114155142 nuclear pore complex-associated protein TPR [Homo
sapiens]
Length = 2363
Score = 29.3 bits (64), Expect = 0.99
Identities = 26/106 (24%), Positives = 46/106 (43%), Gaps = 3/106 (2%)
Query: 20 EKTKQGVTEAAEKTKEGVLYVGSKTREGVVQGVASVAEKTKEQASHLGGAVFSGAGNIAA 79
E+ +Q +TE EKT++ + V +K++ + GV K E+ GA+ +
Sbjct: 1540 EQLRQQITEKEEKTRKAI--VAAKSKIAHLAGVKDQLTKENEELKQRNGALDQQKDELDV 1597
Query: 80 ATGLVKREEFPTDLKPEEVAQEAAEEPLIEPLMEPEGESYEDPPQE 125
+K + + E +E E L E EP+ S + P Q+
Sbjct: 1598 RITALKSQYEGRISRLERELREHQERHL-EQRDEPQEPSNKVPEQQ 1642
>gi|239744995 PREDICTED: hypothetical protein XP_002343325 [Homo
sapiens]
Length = 909
Score = 28.9 bits (63), Expect = 1.3
Identities = 21/65 (32%), Positives = 28/65 (43%), Gaps = 4/65 (6%)
Query: 68 GAVFSGAGNIAAATGLVKREEFPTDLKPEEVAQEAAEEPLIEPLMEPEGESYEDPPQEEY 127
GA G G + G V+ P +P AQ A E PL P PE + P+E+
Sbjct: 703 GAALRGGGEVGIQEGGVRG---PPTSRPAR-AQGAQESPLPAPSEPPEAVEGKASPREQG 758
Query: 128 QEYEP 132
+E P
Sbjct: 759 EEGAP 763
>gi|113204617 skeletal muscle ryanodine receptor isoform 2 [Homo
sapiens]
Length = 5033
Score = 28.9 bits (63), Expect = 1.3
Identities = 39/132 (29%), Positives = 51/132 (38%), Gaps = 9/132 (6%)
Query: 7 GLSMAKEGVVAAAEKTKQGVTEAAEKT---KEGVLYVGSKTREGVVQGVASVAEKTKEQA 63
G A G A E +G +AAE +E V G +G V V E A
Sbjct: 4388 GEQPAGPGGDADGEGASEGAGDAAEGAGDEEEAVHEAGPGGADGAV-AVTDGGPFRPEGA 4446
Query: 64 SHLG--GAVFSGAGNIAAATGLVKREEFPTDLKPEEVAQEAAEEPLIEPLMEPEGESYED 121
LG G + ++KR+ D EE+ E EP EP +EPE E+
Sbjct: 4447 GGLGDMGDTTPAEPPTPEGSPILKRK-LGVDGVEEELPPEPEPEP--EPELEPEKADAEN 4503
Query: 122 PPQEEYQEYEPE 133
+EE E PE
Sbjct: 4504 GEKEEVPEPTPE 4515
>gi|113204615 skeletal muscle ryanodine receptor isoform 1 [Homo
sapiens]
Length = 5038
Score = 28.9 bits (63), Expect = 1.3
Identities = 39/132 (29%), Positives = 51/132 (38%), Gaps = 9/132 (6%)
Query: 7 GLSMAKEGVVAAAEKTKQGVTEAAEKT---KEGVLYVGSKTREGVVQGVASVAEKTKEQA 63
G A G A E +G +AAE +E V G +G V V E A
Sbjct: 4393 GEQPAGPGGDADGEGASEGAGDAAEGAGDEEEAVHEAGPGGADGAV-AVTDGGPFRPEGA 4451
Query: 64 SHLG--GAVFSGAGNIAAATGLVKREEFPTDLKPEEVAQEAAEEPLIEPLMEPEGESYED 121
LG G + ++KR+ D EE+ E EP EP +EPE E+
Sbjct: 4452 GGLGDMGDTTPAEPPTPEGSPILKRK-LGVDGVEEELPPEPEPEP--EPELEPEKADAEN 4508
Query: 122 PPQEEYQEYEPE 133
+EE E PE
Sbjct: 4509 GEKEEVPEPTPE 4520
>gi|122937241 SH3 and multiple ankyrin repeat domains 3 [Homo sapiens]
Length = 1747
Score = 28.9 bits (63), Expect = 1.3
Identities = 31/118 (26%), Positives = 45/118 (38%), Gaps = 19/118 (16%)
Query: 19 AEKTKQGVTEAAEKTKEGVLYVGSKTREGVVQGVASVAEKTKEQASHLGGAVFSGAGNIA 78
AEK + ++ E K +L V + + + A ++ S LGGA
Sbjct: 1193 AEKVPREERKSPEDKKSMILSVLDTSLQRPAGLIVVHATSNGQEPSRLGGA--------- 1243
Query: 79 AATGLVKREEFP--TDLKPEEVAQEAAEEPLIEPLMEPEGESYEDP-PQEEYQEYEPE 133
EE P +L P + A EPL P +P G + D P + E EPE
Sbjct: 1244 -------EEERPGTPELAPAPMQSAAVAEPLPSPRAQPPGGTPADAGPGQGSSEEEPE 1294
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.303 0.124 0.327
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,102,618
Number of Sequences: 37866
Number of extensions: 224577
Number of successful extensions: 1077
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 53
Number of HSP's that attempted gapping in prelim test: 861
Number of HSP's gapped (non-prelim): 175
length of query: 134
length of database: 18,247,518
effective HSP length: 91
effective length of query: 43
effective length of database: 14,801,712
effective search space: 636473616
effective search space used: 636473616
T: 11
A: 40
X1: 17 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.8 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.