Guide to the Human Genome
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Name: CRTAC1 Sequence: fasta or formatted (661aa) NCBI GI: 47777317
Description:

cartilage acidic protein 1

Referenced in:

Bone and Related Tissues

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.4         62           7
 C cysteine            2.1         14           1
 D aspartate           7.7         51           2
 E glutamate           5.1         34           2
 F phenylalanine       4.4         29           2
 G glycine            10.0         66           2
 H histidine           1.7         11           1
 I isoleucine          3.8         25           2
 K lysine              2.7         18           2
 L leucine             7.1         47           4
 M methionine          2.0         13           1
 N asparagine          5.9         39           3
 P proline             5.9         39           2
 Q glutamine           2.3         15           2
 R arginine            6.5         43           2
 S serine              7.0         46           3
 T threonine           4.5         30           2
 V valine              7.9         52           2
 W tryptophan          0.8          5           1
 Y tyrosine            3.3         22           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   cartilage acidic protein 1 
FBLN1                 0.032   fibulin 1 isoform B precursor 
FBLN1                 0.032   fibulin 1 isoform A precursor 
FBLN1                 0.032   fibulin 1 isoform D 
FBLN1                 0.032   fibulin 1 isoform C precursor 
FBLN2                 0.026   fibulin 2 isoform b precursor 
FBLN2                 0.026   fibulin 2 isoform a precursor 
FBN2                  0.025   fibrillin 2 precursor 
FBN3                  0.022   fibrillin 3 precursor 
LTBP1                 0.019   latent transforming growth factor beta binding prote...
LTBP1                 0.019   latent transforming growth factor beta binding prote...
FBLN5                 0.019   fibulin 5 precursor 
FBN1                  0.018   fibrillin 1 precursor 
HMCN1                 0.018   hemicentin 1 
LTBP2                 0.017   latent transforming growth factor beta binding protei...
CRELD2                0.017   cysteine-rich with EGF-like domains 2 isoform b [Ho...
CRELD2                0.017   cysteine-rich with EGF-like domains 2 isoform a [Ho...
LTBP3                 0.015   latent transforming growth factor beta binding prot...
LTBP3                 0.015   latent transforming growth factor beta binding prote...
EGFL6                 0.015   epidermal growth factor-like protein 6 precursor [Ho...
SCUBE2                0.014   CEGP1 protein 
NID2                  0.014   nidogen 2 precursor 
LRP2                  0.014   low density lipoprotein-related protein 2 
LTBP4                 0.014   latent transforming growth factor beta binding prot...
LTBP4                 0.014   latent transforming growth factor beta binding prot...
LTBP4                 0.014   latent transforming growth factor beta binding prot...
NID1                  0.014   nidogen 1 precursor 
EFEMP1                0.014   EGF-containing fibulin-like extracellular matrix pro...
EFEMP1                0.014   EGF-containing fibulin-like extracellular matrix pro...
EFEMP1                0.014   EGF-containing fibulin-like extracellular matrix prot...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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