Guide to the Human Genome
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Name: RAB9A Sequence: fasta or formatted (201aa) NCBI GI: 4759012
Description:

RAB9A, member RAS oncogene family

Referenced in:

Rab

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.0         12           3
 C cysteine            2.5          5           2
 D aspartate           8.0         16           2
 E glutamate           6.5         13           2
 F phenylalanine       7.0         14           1
 G glycine             5.5         11           2
 H histidine           2.0          4           1
 I isoleucine          4.0          8           1
 K lysine              6.0         12           2
 L leucine             7.5         15           2
 M methionine          1.5          3           1
 N asparagine          4.5          9           1
 P proline             3.0          6           1
 Q glutamine           4.0          8           1
 R arginine            5.5         11           2
 S serine              9.0         18           3
 T threonine           6.5         13           1
 V valine              7.0         14           1
 W tryptophan          1.5          3           1
 Y tyrosine            3.0          6           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   RAB9A, member RAS oncogene family 
RAB9B                 0.778   RAB9B, member RAS oncogene family 
RAB7A                 0.472   RAB7, member RAS oncogene family 
RAB7B                 0.307   RAB7B, member RAS oncogene family 
RAB11A                0.302   Ras-related protein Rab-11A 
RAB11B                0.281   RAB11B, member RAS oncogene family 
LOC100131294          0.271   PREDICTED: similar to RAB13, member RAS oncogene fa...
LOC100131294          0.271   PREDICTED: similar to hCG24991 
LOC100131294          0.271   PREDICTED: similar to hCG24991 
RAB13                 0.268   RAB13, member RAS oncogene family 
RAB8B                 0.265   RAB8B, member RAS oncogene family 
RAB7L1                0.263   RAB7, member RAS oncogene family-like 1 isoform 1 [...
RAB7L1                0.263   RAB7, member RAS oncogene family-like 1 isoform 1 [Ho...
RAB30                 0.263   RAB30, member RAS oncogene family 
RAB1A                 0.263   RAB1A, member RAS oncogene family isoform 1 
RAB1B                 0.263   RAB1B, member RAS oncogene family 
RAB25                 0.258   RAB25 
RAB8A                 0.258   mel transforming oncogene 
RAB35                 0.255   RAB35, member RAS oncogene family 
RAB18                 0.253   RAB18, member RAS oncogene family 
RAB21                 0.250   RAB21, member RAS oncogene family 
RAB14                 0.250   GTPase Rab14 
RAB4A                 0.247   RAB4A, member RAS oncogene family 
RAB37                 0.245   RAB37, member RAS oncogene family isoform 3 
RAB39B                0.242   RAB39B, member RAS oncogene family 
RAB10                 0.242   ras-related GTP-binding protein RAB10 
RAB27A                0.242   Ras-related protein Rab-27A 
RAB27A                0.242   Ras-related protein Rab-27A 
RAB27A                0.242   Ras-related protein Rab-27A 
RAB27A                0.242   Ras-related protein Rab-27A 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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