Guide to the Human Genome
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Name: RAB39B Sequence: fasta or formatted (213aa) NCBI GI: 25188193
Description:

RAB39B, member RAS oncogene family

Referenced in:

Rab

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.2         11           3
 C cysteine            1.9          4           1
 D aspartate           4.7         10           1
 E glutamate           8.9         19           2
 F phenylalanine       5.2         11           2
 G glycine             6.6         14           2
 H histidine           2.3          5           1
 I isoleucine          7.0         15           1
 K lysine              5.2         11           1
 L leucine             7.0         15           3
 M methionine          0.9          2           1
 N asparagine          2.3          5           1
 P proline             1.9          4           1
 Q glutamine           4.7         10           1
 R arginine            8.9         19           2
 S serine              5.6         12           2
 T threonine           6.1         13           1
 V valine             10.3         22           2
 W tryptophan          1.9          4           1
 Y tyrosine            3.3          7           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   RAB39B, member RAS oncogene family 
RAB39                 0.796   RAB39, member RAS oncogene family 
RAB2B                 0.389   RAB2B protein isoform 1 
RAB2A                 0.387   RAB2A, member RAS oncogene family 
RAB8B                 0.369   RAB8B, member RAS oncogene family 
RAB8A                 0.367   mel transforming oncogene 
RAB13                 0.357   RAB13, member RAS oncogene family 
LOC100131294          0.350   PREDICTED: similar to RAB13, member RAS oncogene fa...
LOC100131294          0.350   PREDICTED: similar to hCG24991 
LOC100131294          0.350   PREDICTED: similar to hCG24991 
RAB14                 0.347   GTPase Rab14 
RAB4B                 0.335   ras-related GTP-binding protein 4b 
RAB11B                0.330   RAB11B, member RAS oncogene family 
RAB11A                0.330   Ras-related protein Rab-11A 
RAB10                 0.325   ras-related GTP-binding protein RAB10 
RAB4A                 0.323   RAB4A, member RAS oncogene family 
RAB30                 0.323   RAB30, member RAS oncogene family 
RAB26                 0.318   RAB26, member RAS oncogene family 
RAB43                 0.318   RAB43 protein 
RAB1A                 0.315   RAB1A, member RAS oncogene family isoform 1 
RAB1B                 0.308   RAB1B, member RAS oncogene family 
RAB37                 0.300   RAB37, member RAS oncogene family isoform 3 
RAB27A                0.298   Ras-related protein Rab-27A 
RAB27A                0.298   Ras-related protein Rab-27A 
RAB27A                0.298   Ras-related protein Rab-27A 
RAB27A                0.298   Ras-related protein Rab-27A 
RAB37                 0.298   RAB37, member RAS oncogene family isoform 2 
RAB19                 0.293   RAB19, member RAS oncogene family 
RAB33B                0.291   RAB33B, member RAS oncogene family 
RAB3A                 0.288   RAB3A, member RAS oncogene family 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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