Guide to the Human Genome
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Name: LOC100131294 Sequence: fasta or formatted (327aa) NCBI GI: 169204174
Description:

PREDICTED: similar to hCG24991

Not currently referenced in the text

Other entries for this name:
alt mRNA {327aa} PREDICTED: similar to RAB13, member RAS oncogene family
alt mRNA {327aa} PREDICTED: similar to hCG24991
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.6         25           1
 C cysteine            2.8          9           1
 D aspartate           5.2         17           1
 E glutamate           5.2         17           2
 F phenylalanine       3.7         12           2
 G glycine             7.6         25           2
 H histidine           2.1          7           1
 I isoleucine          7.3         24           2
 K lysine              7.0         23           2
 L leucine             8.6         28           3
 M methionine          2.1          7           1
 N asparagine          4.3         14           2
 P proline             4.3         14           2
 Q glutamine           3.1         10           1
 R arginine            5.8         19           2
 S serine              8.9         29           2
 T threonine           5.8         19           2
 V valine              4.6         15           1
 W tryptophan          0.9          3           1
 Y tyrosine            3.1         10           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to hCG24991 
LOC100131294          1.000   PREDICTED: similar to RAB13, member RAS oncogene fa...
LOC100131294          1.000   PREDICTED: similar to hCG24991 
RAB13                 0.583   RAB13, member RAS oncogene family 
RAB8B                 0.379   RAB8B, member RAS oncogene family 
RAB8A                 0.373   mel transforming oncogene 
RAB10                 0.351   ras-related GTP-binding protein RAB10 
RAB1A                 0.305   RAB1A, member RAS oncogene family isoform 1 
RAB1B                 0.297   RAB1B, member RAS oncogene family 
RAB35                 0.269   RAB35, member RAS oncogene family 
RAB26                 0.261   RAB26, member RAS oncogene family 
RAB3C                 0.253   RAB3C, member RAS oncogene family 
RAB37                 0.252   RAB37, member RAS oncogene family isoform 2 
RAB3A                 0.250   RAB3A, member RAS oncogene family 
RAB3D                 0.248   RAB3D, member RAS oncogene family 
RAB3B                 0.247   RAB3B, member RAS oncogene family 
RAB2B                 0.247   RAB2B protein isoform 1 
RAB2A                 0.247   RAB2A, member RAS oncogene family 
RAB43                 0.242   RAB43 protein 
RAB12                 0.241   RAB12, member RAS oncogene family 
RAB19                 0.234   RAB19, member RAS oncogene family 
RAB37                 0.230   RAB37, member RAS oncogene family isoform 3 
RAB11B                0.230   RAB11B, member RAS oncogene family 
RAB11A                0.230   Ras-related protein Rab-11A 
RAB39B                0.223   RAB39B, member RAS oncogene family 
RAB30                 0.222   RAB30, member RAS oncogene family 
RAB4A                 0.219   RAB4A, member RAS oncogene family 
RAB4B                 0.215   ras-related GTP-binding protein 4b 
RAB27B                0.214   RAB27B, member RAS oncogene family 
RAB14                 0.212   GTPase Rab14 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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