Guide to the Human Genome
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Name: RAB10 Sequence: fasta or formatted (200aa) NCBI GI: 33695095
Description:

ras-related GTP-binding protein RAB10

Referenced in:

Rab

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.0         10           1
 C cysteine            2.0          4           2
 D aspartate           7.0         14           2
 E glutamate           6.0         12           1
 F phenylalanine       5.5         11           2
 G glycine             9.0         18           3
 H histidine           1.5          3           1
 I isoleucine          9.0         18           1
 K lysine             10.5         21           2
 L leucine             7.5         15           3
 M methionine          2.5          5           1
 N asparagine          5.0         10           1
 P proline             1.5          3           1
 Q glutamine           2.0          4           1
 R arginine            4.5          9           1
 S serine              5.5         11           2
 T threonine           7.5         15           2
 V valine              5.0         10           2
 W tryptophan          1.5          3           1
 Y tyrosine            2.0          4           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ras-related GTP-binding protein RAB10 
RAB8B                 0.662   RAB8B, member RAS oncogene family 
RAB8A                 0.654   mel transforming oncogene 
RAB13                 0.597   RAB13, member RAS oncogene family 
LOC100131294          0.584   PREDICTED: similar to RAB13, member RAS oncogene fa...
LOC100131294          0.584   PREDICTED: similar to hCG24991 
LOC100131294          0.584   PREDICTED: similar to hCG24991 
RAB1A                 0.495   RAB1A, member RAS oncogene family isoform 1 
RAB1B                 0.487   RAB1B, member RAS oncogene family 
RAB3D                 0.455   RAB3D, member RAS oncogene family 
RAB3A                 0.448   RAB3A, member RAS oncogene family 
RAB3B                 0.442   RAB3B, member RAS oncogene family 
RAB3C                 0.442   RAB3C, member RAS oncogene family 
RAB35                 0.442   RAB35, member RAS oncogene family 
RAB26                 0.442   RAB26, member RAS oncogene family 
RAB37                 0.435   RAB37, member RAS oncogene family isoform 2 
RAB12                 0.429   RAB12, member RAS oncogene family 
RAB2B                 0.408   RAB2B protein isoform 1 
RAB2A                 0.401   RAB2A, member RAS oncogene family 
RAB43                 0.387   RAB43 protein 
RAB11A                0.385   Ras-related protein Rab-11A 
RAB37                 0.382   RAB37, member RAS oncogene family isoform 3 
RAB11B                0.382   RAB11B, member RAS oncogene family 
RAB30                 0.377   RAB30, member RAS oncogene family 
RAB18                 0.366   RAB18, member RAS oncogene family 
RAB19                 0.361   RAB19, member RAS oncogene family 
RAB27A                0.351   Ras-related protein Rab-27A 
RAB27A                0.351   Ras-related protein Rab-27A 
RAB27A                0.351   Ras-related protein Rab-27A 
RAB27A                0.351   Ras-related protein Rab-27A 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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