Guide to the Human Genome
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Name: RAB21 Sequence: fasta or formatted (225aa) NCBI GI: 7661922
Description:

RAB21, member RAS oncogene family

Referenced in:

Rab

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.3         21           4
 C cysteine            3.1          7           2
 D aspartate           4.9         11           2
 E glutamate           7.1         16           2
 F phenylalanine       2.7          6           1
 G glycine            12.0         27           6
 H histidine           2.2          5           1
 I isoleucine          6.2         14           2
 K lysine              8.0         18           2
 L leucine             7.6         17           2
 M methionine          1.3          3           1
 N asparagine          4.4         10           1
 P proline             1.3          3           1
 Q glutamine           4.4         10           1
 R arginine            4.9         11           2
 S serine              6.2         14           2
 T threonine           4.4         10           2
 V valine              5.8         13           2
 W tryptophan          0.9          2           1
 Y tyrosine            3.1          7           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   RAB21, member RAS oncogene family 
RAB5C                 0.336   RAB5C, member RAS oncogene family isoform a 
RAB5C                 0.336   RAB5C, member RAS oncogene family isoform b 
RAB5A                 0.315   RAB5A, member RAS oncogene family 
RAB5B                 0.308   RAB5B, member RAS oncogene family 
RAB30                 0.292   RAB30, member RAS oncogene family 
RAB13                 0.289   RAB13, member RAS oncogene family 
RAB31                 0.287   RAB31, member RAS oncogene family 
LOC100131294          0.285   PREDICTED: similar to RAB13, member RAS oncogene fa...
LOC100131294          0.285   PREDICTED: similar to hCG24991 
LOC100131294          0.285   PREDICTED: similar to hCG24991 
RAB1A                 0.285   RAB1A, member RAS oncogene family isoform 1 
RAB8A                 0.282   mel transforming oncogene 
RAB43                 0.275   RAB43 protein 
RAB17                 0.275   RAB17, member RAS oncogene family 
RAB22A                0.275   RAS-related protein RAB-22A 
RAB1B                 0.271   RAB1B, member RAS oncogene family 
RAB8B                 0.269   RAB8B, member RAS oncogene family 
RAB6A                 0.266   RAB6A, member RAS oncogene family isoform b 
RAB6A                 0.266   RAB6A, member RAS oncogene family isoform a 
RAB6B                 0.266   RAB6B, member RAS oncogene family 
RAB2A                 0.266   RAB2A, member RAS oncogene family 
RAB14                 0.264   GTPase Rab14 
RAB35                 0.264   RAB35, member RAS oncogene family 
RAB11B                0.255   RAB11B, member RAS oncogene family 
RAB3D                 0.255   RAB3D, member RAS oncogene family 
RAB2B                 0.252   RAB2B protein isoform 1 
RAB11A                0.250   Ras-related protein Rab-11A 
RAB12                 0.248   RAB12, member RAS oncogene family 
RAB3C                 0.248   RAB3C, member RAS oncogene family 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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