Guide to the Human Genome
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Name: RAB8B Sequence: fasta or formatted (207aa) NCBI GI: 7706563
Description:

RAB8B, member RAS oncogene family

Referenced in:

Rab

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.3         13           1
 C cysteine            1.4          3           1
 D aspartate           6.8         14           1
 E glutamate           6.3         13           2
 F phenylalanine       6.3         13           2
 G glycine             6.8         14           2
 H histidine           0.5          1           1
 I isoleucine          9.2         19           1
 K lysine              9.7         20           2
 L leucine             7.7         16           3
 M methionine          3.4          7           1
 N asparagine          5.8         12           1
 P proline             0.5          1           1
 Q glutamine           1.4          3           1
 R arginine            6.3         13           1
 S serine              7.2         15           2
 T threonine           7.7         16           2
 V valine              2.9          6           1
 W tryptophan          1.0          2           1
 Y tyrosine            2.9          6           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   RAB8B, member RAS oncogene family 
RAB8A                 0.845   mel transforming oncogene 
RAB10                 0.654   ras-related GTP-binding protein RAB10 
RAB13                 0.638   RAB13, member RAS oncogene family 
LOC100131294          0.623   PREDICTED: similar to RAB13, member RAS oncogene fa...
LOC100131294          0.623   PREDICTED: similar to hCG24991 
LOC100131294          0.623   PREDICTED: similar to hCG24991 
RAB1A                 0.519   RAB1A, member RAS oncogene family isoform 1 
RAB1B                 0.509   RAB1B, member RAS oncogene family 
RAB3D                 0.468   RAB3D, member RAS oncogene family 
RAB3A                 0.465   RAB3A, member RAS oncogene family 
RAB3C                 0.457   RAB3C, member RAS oncogene family 
RAB26                 0.450   RAB26, member RAS oncogene family 
RAB2B                 0.444   RAB2B protein isoform 1 
RAB35                 0.442   RAB35, member RAS oncogene family 
RAB37                 0.442   RAB37, member RAS oncogene family isoform 2 
RAB3B                 0.437   RAB3B, member RAS oncogene family 
RAB2A                 0.437   RAB2A, member RAS oncogene family 
RAB11A                0.411   Ras-related protein Rab-11A 
RAB19                 0.406   RAB19, member RAS oncogene family 
RAB12                 0.406   RAB12, member RAS oncogene family 
RAB37                 0.403   RAB37, member RAS oncogene family isoform 3 
RAB43                 0.403   RAB43 protein 
RAB11B                0.401   RAB11B, member RAS oncogene family 
RAB30                 0.401   RAB30, member RAS oncogene family 
RAB39B                0.388   RAB39B, member RAS oncogene family 
RAB4B                 0.380   ras-related GTP-binding protein 4b 
RAB14                 0.375   GTPase Rab14 
RAB39                 0.372   RAB39, member RAS oncogene family 
RAB4A                 0.372   RAB4A, member RAS oncogene family 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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