Guide to the Human Genome
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Name: RAB4A Sequence: fasta or formatted (218aa) NCBI GI: 19923260
Description:

RAB4A, member RAS oncogene family

Referenced in:

Rab

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.2         20           2
 C cysteine            2.3          5           1
 D aspartate           5.0         11           2
 E glutamate           7.8         17           2
 F phenylalanine       5.0         11           1
 G glycine             7.8         17           2
 H histidine           0.9          2           1
 I isoleucine          6.0         13           2
 K lysine              5.5         12           2
 L leucine             9.2         20           2
 M methionine          2.3          5           1
 N asparagine          5.0         11           1
 P proline             1.4          3           1
 Q glutamine           5.0         11           1
 R arginine            6.4         14           2
 S serine              6.4         14           1
 T threonine           6.0         13           1
 V valine              4.6         10           1
 W tryptophan          0.9          2           1
 Y tyrosine            3.2          7           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   RAB4A, member RAS oncogene family 
RAB4B                 0.859   ras-related GTP-binding protein 4b 
RAB14                 0.564   GTPase Rab14 
RAB2B                 0.484   RAB2B protein isoform 1 
RAB2A                 0.474   RAB2A, member RAS oncogene family 
RAB11B                0.355   RAB11B, member RAS oncogene family 
RAB2B                 0.353   RAB2B protein isoform 2 
RAB11A                0.350   Ras-related protein Rab-11A 
RAB8B                 0.350   RAB8B, member RAS oncogene family 
RAB43                 0.345   RAB43 protein 
RAB30                 0.345   RAB30, member RAS oncogene family 
RAB25                 0.343   RAB25 
RAB1A                 0.343   RAB1A, member RAS oncogene family isoform 1 
RAB13                 0.338   RAB13, member RAS oncogene family 
LOC100131294          0.338   PREDICTED: similar to RAB13, member RAS oncogene fa...
LOC100131294          0.338   PREDICTED: similar to hCG24991 
LOC100131294          0.338   PREDICTED: similar to hCG24991 
RAB1B                 0.336   RAB1B, member RAS oncogene family 
RAB8A                 0.326   mel transforming oncogene 
RAB39B                0.319   RAB39B, member RAS oncogene family 
RAB10                 0.316   ras-related GTP-binding protein RAB10 
RAB19                 0.314   RAB19, member RAS oncogene family 
RAB39                 0.311   RAB39, member RAS oncogene family 
RAB37                 0.304   RAB37, member RAS oncogene family isoform 2 
RAB37                 0.297   RAB37, member RAS oncogene family isoform 3 
RAB12                 0.292   RAB12, member RAS oncogene family 
RAB5C                 0.290   RAB5C, member RAS oncogene family isoform a 
RAB5C                 0.290   RAB5C, member RAS oncogene family isoform b 
RAB18                 0.287   RAB18, member RAS oncogene family 
RAB26                 0.287   RAB26, member RAS oncogene family 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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