Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: RAB27A Sequence: fasta or formatted (221aa) NCBI GI: 34485711
Description:

Ras-related protein Rab-27A

Referenced in:

Lysosomes and Related Organelles
Rab

Other entries for this name:
alt mRNA [221aa] Ras-related protein Rab-27A
alt mRNA [221aa] Ras-related protein Rab-27A
alt mRNA [221aa] Ras-related protein Rab-27A
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.8         15           2
 C cysteine            2.3          5           1
 D aspartate           7.2         16           1
 E glutamate           7.2         16           3
 F phenylalanine       5.0         11           2
 G glycine             8.6         19           1
 H histidine           1.4          3           1
 I isoleucine          5.4         12           1
 K lysine              5.4         12           1
 L leucine             9.0         20           3
 M methionine          2.7          6           1
 N asparagine          4.1          9           1
 P proline             1.8          4           1
 Q glutamine           4.5         10           1
 R arginine            5.9         13           1
 S serine              6.8         15           1
 T threonine           5.4         12           2
 V valine              5.4         12           2
 W tryptophan          1.4          3           1
 Y tyrosine            3.6          8           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   Ras-related protein Rab-27A 
RAB27A                1.000   Ras-related protein Rab-27A 
RAB27A                1.000   Ras-related protein Rab-27A 
RAB27A                1.000   Ras-related protein Rab-27A 
RAB27B                0.699   RAB27B, member RAS oncogene family 
RAB3D                 0.362   RAB3D, member RAS oncogene family 
RAB3C                 0.360   RAB3C, member RAS oncogene family 
RAB3A                 0.360   RAB3A, member RAS oncogene family 
RAB3B                 0.353   RAB3B, member RAS oncogene family 
RAB8A                 0.336   mel transforming oncogene 
RAB8B                 0.334   RAB8B, member RAS oncogene family 
RAB10                 0.315   ras-related GTP-binding protein RAB10 
RAB37                 0.308   RAB37, member RAS oncogene family isoform 2 
RAB13                 0.308   RAB13, member RAS oncogene family 
LOC100131294          0.306   PREDICTED: similar to RAB13, member RAS oncogene fa...
LOC100131294          0.306   PREDICTED: similar to hCG24991 
LOC100131294          0.306   PREDICTED: similar to hCG24991 
RAB1B                 0.304   RAB1B, member RAS oncogene family 
RAB1A                 0.296   RAB1A, member RAS oncogene family isoform 1 
RAB35                 0.292   RAB35, member RAS oncogene family 
RAB37                 0.289   RAB37, member RAS oncogene family isoform 3 
RAB39B                0.285   RAB39B, member RAS oncogene family 
RAB26                 0.285   RAB26, member RAS oncogene family 
RAB11A                0.278   Ras-related protein Rab-11A 
RAB11B                0.273   RAB11B, member RAS oncogene family 
RAB2A                 0.268   RAB2A, member RAS oncogene family 
RAB39                 0.268   RAB39, member RAS oncogene family 
RAB2B                 0.259   RAB2B protein isoform 1 
RAB25                 0.259   RAB25 
RAB4A                 0.252   RAB4A, member RAS oncogene family 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press