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Search of human proteins with 4758554
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|4758554 homeobox C6 isoform 1 [Homo sapiens]
(235 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|4758554 homeobox C6 isoform 1 [Homo sapiens] 483 e-137
gi|24497544 homeobox C6 isoform 2 [Homo sapiens] 314 5e-86
gi|13489077 homeobox A6 [Homo sapiens] 205 2e-53
gi|23503237 homeobox B6 [Homo sapiens] 187 9e-48
gi|24497556 homeobox A7 [Homo sapiens] 143 1e-34
gi|24497517 homeobox A5 [Homo sapiens] 142 2e-34
gi|85068580 homeobox B7 [Homo sapiens] 134 7e-32
gi|12056969 homeobox C8 [Homo sapiens] 131 6e-31
gi|4504469 homeobox B5 [Homo sapiens] 128 5e-30
gi|11321638 homeobox C5 [Homo sapiens] 125 4e-29
gi|13273315 homeobox B4 [Homo sapiens] 120 1e-27
gi|23397672 homeobox D4 [Homo sapiens] 118 4e-27
gi|148613882 homeobox A4 [Homo sapiens] 117 7e-27
gi|24497538 homeobox C4 [Homo sapiens] 115 2e-26
gi|24497540 homeobox C4 [Homo sapiens] 115 2e-26
gi|13273317 homeobox B8 [Homo sapiens] 115 2e-26
gi|15029506 homeobox D8 [Homo sapiens] 113 2e-25
gi|24497513 homeobox A3 isoform a [Homo sapiens] 98 7e-21
gi|13562112 homeobox A3 isoform a [Homo sapiens] 98 7e-21
gi|4557673 pancreatic and duodenal homeobox 1 [Homo sapiens] 97 2e-20
gi|24497515 homeobox A3 isoform b [Homo sapiens] 94 1e-19
gi|84570137 homeobox B3 [Homo sapiens] 93 2e-19
gi|10140847 homeobox A2 [Homo sapiens] 93 2e-19
gi|19923391 homeobox D3 [Homo sapiens] 92 5e-19
gi|194363768 homeobox D9 [Homo sapiens] 88 7e-18
gi|89257348 homeo box HB9 [Homo sapiens] 85 5e-17
gi|24497547 homeobox C9 [Homo sapiens] 84 8e-17
gi|4504465 homeobox B2 [Homo sapiens] 84 8e-17
gi|23510366 homeobox D10 [Homo sapiens] 82 4e-16
gi|23097236 homeobox A9 [Homo sapiens] 82 4e-16
>gi|4758554 homeobox C6 isoform 1 [Homo sapiens]
Length = 235
Score = 483 bits (1244), Expect = e-137
Identities = 235/235 (100%), Positives = 235/235 (100%)
Query: 1 MNSYFTNPSLSCHLAGGQDVLPNVALNSTAYDPVRHFSTYGAAVAQNRIYSTPFYSPQEN 60
MNSYFTNPSLSCHLAGGQDVLPNVALNSTAYDPVRHFSTYGAAVAQNRIYSTPFYSPQEN
Sbjct: 1 MNSYFTNPSLSCHLAGGQDVLPNVALNSTAYDPVRHFSTYGAAVAQNRIYSTPFYSPQEN 60
Query: 61 VVFSSSRGPYDYGSNSFYQEKDMLSNCRQNTLGHNTQTSIAQDFSSEQGRTAPQDQKASI 120
VVFSSSRGPYDYGSNSFYQEKDMLSNCRQNTLGHNTQTSIAQDFSSEQGRTAPQDQKASI
Sbjct: 61 VVFSSSRGPYDYGSNSFYQEKDMLSNCRQNTLGHNTQTSIAQDFSSEQGRTAPQDQKASI 120
Query: 121 QIYPWMQRMNSHSGVGYGADRRRGRQIYSRYQTLELEKEFHFNRYLTRRRRIEIANALCL 180
QIYPWMQRMNSHSGVGYGADRRRGRQIYSRYQTLELEKEFHFNRYLTRRRRIEIANALCL
Sbjct: 121 QIYPWMQRMNSHSGVGYGADRRRGRQIYSRYQTLELEKEFHFNRYLTRRRRIEIANALCL 180
Query: 181 TERQIKIWFQNRRMKWKKESNLTSTLSGGGGGATADSLGGKEEKREETEEEKQKE 235
TERQIKIWFQNRRMKWKKESNLTSTLSGGGGGATADSLGGKEEKREETEEEKQKE
Sbjct: 181 TERQIKIWFQNRRMKWKKESNLTSTLSGGGGGATADSLGGKEEKREETEEEKQKE 235
>gi|24497544 homeobox C6 isoform 2 [Homo sapiens]
Length = 153
Score = 314 bits (804), Expect = 5e-86
Identities = 153/153 (100%), Positives = 153/153 (100%)
Query: 83 MLSNCRQNTLGHNTQTSIAQDFSSEQGRTAPQDQKASIQIYPWMQRMNSHSGVGYGADRR 142
MLSNCRQNTLGHNTQTSIAQDFSSEQGRTAPQDQKASIQIYPWMQRMNSHSGVGYGADRR
Sbjct: 1 MLSNCRQNTLGHNTQTSIAQDFSSEQGRTAPQDQKASIQIYPWMQRMNSHSGVGYGADRR 60
Query: 143 RGRQIYSRYQTLELEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKKESNL 202
RGRQIYSRYQTLELEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKKESNL
Sbjct: 61 RGRQIYSRYQTLELEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKKESNL 120
Query: 203 TSTLSGGGGGATADSLGGKEEKREETEEEKQKE 235
TSTLSGGGGGATADSLGGKEEKREETEEEKQKE
Sbjct: 121 TSTLSGGGGGATADSLGGKEEKREETEEEKQKE 153
>gi|13489077 homeobox A6 [Homo sapiens]
Length = 233
Score = 205 bits (522), Expect = 2e-53
Identities = 111/229 (48%), Positives = 144/229 (62%), Gaps = 14/229 (6%)
Query: 1 MNSYFTNPSLSCHLAGGQD-VLPNVALNSTAYDPVRHF-STYGAAVAQNRIYSTPFYSPQ 58
M+SYF NP+ L GQD L + L YD +R F ++YGA+ ++ Y++P + Q
Sbjct: 1 MSSYFVNPTFPGSLPSGQDSFLGQLPLYQAGYDALRPFPASYGASSLPDKTYTSPCFYQQ 60
Query: 59 ENVVFSSSRGPYDYGSNSFYQEKDMLSNCRQNT---------LGHNTQTSIAQDFSSEQG 109
N V + +R Y+YG++ FY +KD+ + L + + D SS QG
Sbjct: 61 SNSVLACNRASYEYGASCFYSDKDLSGASPSGSGKQRGPGDYLHFSPEQQYKPDSSSGQG 120
Query: 110 RTAPQ---DQKASIQIYPWMQRMNSHSGVGYGADRRRGRQIYSRYQTLELEKEFHFNRYL 166
+ D+K + +YPWMQRMNS +G YG+ RRGRQ Y+RYQTLELEKEFHFNRYL
Sbjct: 121 KALHDEGADRKYTSPVYPWMQRMNSCAGAVYGSHGRRGRQTYTRYQTLELEKEFHFNRYL 180
Query: 167 TRRRRIEIANALCLTERQIKIWFQNRRMKWKKESNLTSTLSGGGGGATA 215
TRRRRIEIANALCLTERQIKIWFQNRRMKWKKE+ L ++ G + A
Sbjct: 181 TRRRRIEIANALCLTERQIKIWFQNRRMKWKKENKLINSTQPSGEDSEA 229
>gi|23503237 homeobox B6 [Homo sapiens]
Length = 224
Score = 187 bits (474), Expect = 9e-48
Identities = 115/238 (48%), Positives = 148/238 (62%), Gaps = 23/238 (9%)
Query: 1 MNSYFTNPSLSCHLAGGQD-VLPNVALNSTAY-DPVRHF-STYGAAVAQNRIYSTPFYSP 57
M+SYF N + LA GQ+ L + L S+ Y DP+RH+ + YG Q++ ++T Y P
Sbjct: 1 MSSYFVNSTFPVTLASGQESFLGQLPLYSSGYADPLRHYPAPYGPGPGQDKGFATSSYYP 60
Query: 58 QENVVFSSSRGPYDYG-SNSFYQEKDM---LSNCRQNTLGHNT--QTSIAQDFSSEQGRT 111
+ + P DYG + +FY+EK+ LS + H ++ AQD S G T
Sbjct: 61 PAGGGYGRA-APCDYGPAPAFYREKESACALSGADEQPPFHPEPRKSDCAQD-KSVFGET 118
Query: 112 APQDQKASIQIYPWMQRMNSHSGVGYGADRRRGRQIYSRYQTLELEKEFHFNRYLTRRRR 171
++QK S +YPWMQRMNS + +G RRGRQ Y+RYQTLELEKEFH+NRYLTRRRR
Sbjct: 119 --EEQKCSTPVYPWMQRMNSCNSSSFGPSGRRGRQTYTRYQTLELEKEFHYNRYLTRRRR 176
Query: 172 IEIANALCLTERQIKIWFQNRRMKWKKESNLTSTLSGGGGGATADSLGGKEEKREETE 229
IEIA+ALCLTERQIKIWFQNRRMKWKKES L S A L +EE+ ++ E
Sbjct: 177 IEIAHALCLTERQIKIWFQNRRMKWKKESKLLS----------ASQLSAEEEEEKQAE 224
>gi|24497556 homeobox A7 [Homo sapiens]
Length = 230
Score = 143 bits (361), Expect = 1e-34
Identities = 92/239 (38%), Positives = 126/239 (52%), Gaps = 17/239 (7%)
Query: 2 NSYFTNPSLSCHLAGGQDVLPNVALNSTAYDPVRHFSTYGAAVAQNRIYSTPFYSPQENV 61
+SY+ N S + AG + N S ++ P S YGA Y+ +
Sbjct: 3 SSYYVNALFSKYTAGAS-LFQNAEPTSCSFAPNSQRSGYGAGAGAFASTVPGLYNVNSPL 61
Query: 62 VFSSSRGPYDYGSNSFYQEKDMLSNCRQNTLGHNTQTSIAQDFSSEQGRTAPQDQKASIQ 121
S Y G++++ ++ QN G + + +++G + A+ +
Sbjct: 62 YQSPFASGYGLGADAYGNLP--CASYDQNIPGLCSDLAKGACDKTDEGALHGAAE-ANFR 118
Query: 122 IYPWMQRMNSHSGVGYGADRRRGRQIYSRYQTLELEKEFHFNRYLTRRRRIEIANALCLT 181
IYPWM+ G DR+RGRQ Y+RYQTLELEKEFHFNRYLTRRRRIEIA+ALCLT
Sbjct: 119 IYPWMRSS--------GPDRKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLT 170
Query: 182 ERQIKIWFQNRRMKWKKE-----SNLTSTLSGGGGGATADSLGGKEEKREETEEEKQKE 235
ERQIKIWFQNRRMKWKKE + G A A + K ++ ++ EEE+ +E
Sbjct: 171 ERQIKIWFQNRRMKWKKEHKDEGPTAAAAPEGAVPSAAATAAADKADEEDDDEEEEDEE 229
>gi|24497517 homeobox A5 [Homo sapiens]
Length = 270
Score = 142 bits (358), Expect = 2e-34
Identities = 87/199 (43%), Positives = 116/199 (58%), Gaps = 22/199 (11%)
Query: 35 RHFSTYGAAVAQNRIYSTPF---YSPQENVVFSSSRGPYDYGSNSFYQEKDMLSNCR--- 88
R ++ +A YS P +SPQ + + S+ P GS+S + K+ LSN
Sbjct: 71 RSYAASASAAPAEPRYSQPATSTHSPQPDPLPCSAVAPSP-GSDSHHGGKNSLSNSSGAS 129
Query: 89 --------QNTLGHNTQTSIAQDFSSEQGRTAPQDQK-----ASIQIYPWMQRMN-SHSG 134
+ G T + +D + + + Q + A QIYPWM++++ SH
Sbjct: 130 ADAGSTHISSREGVGTASGAEEDAPASSEQASAQSEPSPAPPAQPQIYPWMRKLHISHDN 189
Query: 135 VGYGADRRRGRQIYSRYQTLELEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRM 194
+G G + +R R Y+RYQTLELEKEFHFNRYLTRRRRIEIA+ALCL+ERQIKIWFQNRRM
Sbjct: 190 IG-GPEGKRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQIKIWFQNRRM 248
Query: 195 KWKKESNLTSTLSGGGGGA 213
KWKK++ L S GGA
Sbjct: 249 KWKKDNKLKSMSMAAAGGA 267
>gi|85068580 homeobox B7 [Homo sapiens]
Length = 217
Score = 134 bits (337), Expect = 7e-32
Identities = 69/127 (54%), Positives = 85/127 (66%), Gaps = 14/127 (11%)
Query: 101 AQDFSSEQGRTAPQDQKASIQIYPWMQRMNSHSGVGYGADRRRGRQIYSRYQTLELEKEF 160
A+ +++ R + +++ +IYPWM+ G DR+RGRQ Y+RYQTLELEKEF
Sbjct: 105 AKAAGAKEQRDSDLAAESNFRIYPWMRSS--------GTDRKRGRQTYTRYQTLELEKEF 156
Query: 161 HFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKKESNLTSTLSGGGGGATADSLGG 220
H+NRYLTRRRRIEIA+ LCLTERQIKIWFQNRRMKWKKE+ G G T
Sbjct: 157 HYNRYLTRRRRIEIAHTLCLTERQIKIWFQNRRMKWKKENKT------AGPGTTGQDRAE 210
Query: 221 KEEKREE 227
EE+ EE
Sbjct: 211 AEEEEEE 217
>gi|12056969 homeobox C8 [Homo sapiens]
Length = 242
Score = 131 bits (329), Expect = 6e-31
Identities = 94/261 (36%), Positives = 132/261 (50%), Gaps = 45/261 (17%)
Query: 1 MNSYFTNPSLSCHLAGGQDVLPNVALNSTAYDPVRHFSTYGAAVAQNRIYSTPFYSPQEN 60
M+SYF NP S + AG + + P AY R + G + A +Y +P
Sbjct: 1 MSSYFVNPLFSKYKAG-ESLEP-------AYYDCRFPQSVGRSHAL--VYGPGGSAPGFQ 50
Query: 61 VVFSSSRGPYDYG----SNSFYQEKDMLSNC--------------RQNTLGHNTQTSIAQ 102
+ + +G SNS YQ+ +C RQ+ G + S+ Q
Sbjct: 51 HASHHVQDFFHHGTSGISNSGYQQNPCSLSCHGDASKFYGYEALPRQSLYGAQQEASVVQ 110
Query: 103 --------DFSSEQGRTAPQDQKASIQIYPWMQRMNSHSGVGYGADRRRGRQIYSRYQTL 154
+ +S +G+ + ++PWM+ + RR GRQ YSRYQTL
Sbjct: 111 YPDCKSSANTNSSEGQGHLNQNSSPSLMFPWMRP--------HAPGRRSGRQTYSRYQTL 162
Query: 155 ELEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKKESNLTSTLSGGGGGAT 214
ELEKEF FN YLTR+RRIE+++AL LTERQ+KIWFQNRRMKWKKE+N L G
Sbjct: 163 ELEKEFLFNPYLTRKRRIEVSHALGLTERQVKIWFQNRRMKWKKENN-KDKLPGARDEEK 221
Query: 215 ADSLGGKEEKREETEEEKQKE 235
+ G +EE++EE E+E+ K+
Sbjct: 222 VEEEGNEEEEKEEEEKEENKD 242
>gi|4504469 homeobox B5 [Homo sapiens]
Length = 269
Score = 128 bits (321), Expect = 5e-30
Identities = 66/103 (64%), Positives = 78/103 (75%), Gaps = 5/103 (4%)
Query: 112 APQDQKASIQIYPWMQRMN-SHSGVGYGADRRRGRQIYSRYQTLELEKEFHFNRYLTRRR 170
AP+ Q QI+PWM++++ SH G D +R R Y+RYQTLELEKEFHFNRYLTRRR
Sbjct: 168 APEGQTP--QIFPWMRKLHISHDMTG--PDGKRARTAYTRYQTLELEKEFHFNRYLTRRR 223
Query: 171 RIEIANALCLTERQIKIWFQNRRMKWKKESNLTSTLSGGGGGA 213
RIEIA+ALCL+ERQIKIWFQNRRMKWKK++ L S G A
Sbjct: 224 RIEIAHALCLSERQIKIWFQNRRMKWKKDNKLKSMSLATAGSA 266
>gi|11321638 homeobox C5 [Homo sapiens]
Length = 222
Score = 125 bits (313), Expect = 4e-29
Identities = 59/84 (70%), Positives = 68/84 (80%), Gaps = 4/84 (4%)
Query: 121 QIYPWMQRMNSHSGVGYGADRRRGRQIYSRYQTLELEKEFHFNRYLTRRRRIEIANALCL 180
QIYPWM +++ + + D +R R Y+RYQTLELEKEFHFNRYLTRRRRIEIAN LCL
Sbjct: 139 QIYPWMTKLH----MSHETDGKRSRTSYTRYQTLELEKEFHFNRYLTRRRRIEIANNLCL 194
Query: 181 TERQIKIWFQNRRMKWKKESNLTS 204
ERQIKIWFQNRRMKWKK+S + S
Sbjct: 195 NERQIKIWFQNRRMKWKKDSKMKS 218
>gi|13273315 homeobox B4 [Homo sapiens]
Length = 251
Score = 120 bits (301), Expect = 1e-27
Identities = 61/101 (60%), Positives = 75/101 (74%), Gaps = 4/101 (3%)
Query: 122 IYPWMQRMN-SHSGVGY-GADRRRGRQIYSRYQTLELEKEFHFNRYLTRRRRIEIANALC 179
+YPWM++++ S Y G + +R R Y+R Q LELEKEFH+NRYLTRRRR+EIA+ALC
Sbjct: 141 VYPWMRKVHVSTVNPNYAGGEPKRSRTAYTRQQVLELEKEFHYNRYLTRRRRVEIAHALC 200
Query: 180 LTERQIKIWFQNRRMKWKKESNLTSTLSGGGGGATADSLGG 220
L+ERQIKIWFQNRRMKWKK+ L +T GG A S GG
Sbjct: 201 LSERQIKIWFQNRRMKWKKDHKLPNTKIRSGG--AAGSAGG 239
>gi|23397672 homeobox D4 [Homo sapiens]
Length = 255
Score = 118 bits (296), Expect = 4e-27
Identities = 57/98 (58%), Positives = 73/98 (74%), Gaps = 2/98 (2%)
Query: 122 IYPWMQRMNSHS-GVGY-GADRRRGRQIYSRYQTLELEKEFHFNRYLTRRRRIEIANALC 179
+YPWM++++ +S Y G + +R R Y+R Q LELEKEFHFNRYLTRRRRIEIA+ LC
Sbjct: 133 VYPWMKKVHVNSVNPNYTGGEPKRSRTAYTRQQVLELEKEFHFNRYLTRRRRIEIAHTLC 192
Query: 180 LTERQIKIWFQNRRMKWKKESNLTSTLSGGGGGATADS 217
L+ERQIKIWFQNRRMKWKK+ L +T +++ S
Sbjct: 193 LSERQIKIWFQNRRMKWKKDHKLPNTKGRSSSSSSSSS 230
>gi|148613882 homeobox A4 [Homo sapiens]
Length = 320
Score = 117 bits (294), Expect = 7e-27
Identities = 57/98 (58%), Positives = 72/98 (73%), Gaps = 2/98 (2%)
Query: 122 IYPWMQRMN-SHSGVGY-GADRRRGRQIYSRYQTLELEKEFHFNRYLTRRRRIEIANALC 179
+YPWM++++ S Y G + +R R Y+R Q LELEKEFHFNRYLTRRRRIEIA+ LC
Sbjct: 194 VYPWMKKIHVSAVNPSYNGGEPKRSRTAYTRQQVLELEKEFHFNRYLTRRRRIEIAHTLC 253
Query: 180 LTERQIKIWFQNRRMKWKKESNLTSTLSGGGGGATADS 217
L+ERQ+KIWFQNRRMKWKK+ L +T A+A +
Sbjct: 254 LSERQVKIWFQNRRMKWKKDHKLPNTKMRSSNSASASA 291
>gi|24497538 homeobox C4 [Homo sapiens]
Length = 264
Score = 115 bits (289), Expect = 2e-26
Identities = 62/123 (50%), Positives = 81/123 (65%), Gaps = 10/123 (8%)
Query: 122 IYPWMQRMN-SHSGVGY-GADRRRGRQIYSRYQTLELEKEFHFNRYLTRRRRIEIANALC 179
+YPWM++++ S Y G + +R R Y+R Q LELEKEFH+NRYLTRRRRIEIA++LC
Sbjct: 135 VYPWMKKIHVSTVNPNYNGGEPKRSRTAYTRQQVLELEKEFHYNRYLTRRRRIEIAHSLC 194
Query: 180 LTERQIKIWFQNRRMKWKKESNL--TSTLSGGGGGATADSLG------GKEEKREETEEE 231
L+ERQIKIWFQNRRMKWKK+ L T S GA +L ++ + T E
Sbjct: 195 LSERQIKIWFQNRRMKWKKDHRLPNTKVRSAPPAGAAPSTLSAATPGTSEDHSQSATPPE 254
Query: 232 KQK 234
+Q+
Sbjct: 255 QQR 257
>gi|24497540 homeobox C4 [Homo sapiens]
Length = 264
Score = 115 bits (289), Expect = 2e-26
Identities = 62/123 (50%), Positives = 81/123 (65%), Gaps = 10/123 (8%)
Query: 122 IYPWMQRMN-SHSGVGY-GADRRRGRQIYSRYQTLELEKEFHFNRYLTRRRRIEIANALC 179
+YPWM++++ S Y G + +R R Y+R Q LELEKEFH+NRYLTRRRRIEIA++LC
Sbjct: 135 VYPWMKKIHVSTVNPNYNGGEPKRSRTAYTRQQVLELEKEFHYNRYLTRRRRIEIAHSLC 194
Query: 180 LTERQIKIWFQNRRMKWKKESNL--TSTLSGGGGGATADSLG------GKEEKREETEEE 231
L+ERQIKIWFQNRRMKWKK+ L T S GA +L ++ + T E
Sbjct: 195 LSERQIKIWFQNRRMKWKKDHRLPNTKVRSAPPAGAAPSTLSAATPGTSEDHSQSATPPE 254
Query: 232 KQK 234
+Q+
Sbjct: 255 QQR 257
>gi|13273317 homeobox B8 [Homo sapiens]
Length = 243
Score = 115 bits (289), Expect = 2e-26
Identities = 56/81 (69%), Positives = 66/81 (81%), Gaps = 7/81 (8%)
Query: 121 QIYPWMQRMNSHSGVGYGADRRRGRQIYSRYQTLELEKEFHFNRYLTRRRRIEIANALCL 180
Q++PWM+ + A RRRGRQ YSRYQTLELEKEF FN YLTR+RRIE+++AL L
Sbjct: 133 QLFPWMRPQAA-------AGRRRGRQTYSRYQTLELEKEFLFNPYLTRKRRIEVSHALGL 185
Query: 181 TERQIKIWFQNRRMKWKKESN 201
TERQ+KIWFQNRRMKWKKE+N
Sbjct: 186 TERQVKIWFQNRRMKWKKENN 206
>gi|15029506 homeobox D8 [Homo sapiens]
Length = 290
Score = 113 bits (282), Expect = 2e-25
Identities = 54/81 (66%), Positives = 65/81 (80%), Gaps = 7/81 (8%)
Query: 121 QIYPWMQRMNSHSGVGYGADRRRGRQIYSRYQTLELEKEFHFNRYLTRRRRIEIANALCL 180
Q++PWM+ + RRRGRQ YSR+QTLELEKEF FN YLTR+RRIE+++AL L
Sbjct: 184 QMFPWMRPQAAPG-------RRRGRQTYSRFQTLELEKEFLFNPYLTRKRRIEVSHALAL 236
Query: 181 TERQIKIWFQNRRMKWKKESN 201
TERQ+KIWFQNRRMKWKKE+N
Sbjct: 237 TERQVKIWFQNRRMKWKKENN 257
>gi|24497513 homeobox A3 isoform a [Homo sapiens]
Length = 443
Score = 97.8 bits (242), Expect = 7e-21
Identities = 54/114 (47%), Positives = 68/114 (59%), Gaps = 17/114 (14%)
Query: 121 QIYPWMQRM---------NSHSGVGYGADR--------RRGRQIYSRYQTLELEKEFHFN 163
QI+PWM+ +S SG D+ +R R Y+ Q +ELEKEFHFN
Sbjct: 154 QIFPWMKESRQNTKQKTSSSSSGESCAGDKSPPGQASSKRARTAYTSAQLVELEKEFHFN 213
Query: 164 RYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKKESNLTSTLSGGGGGATADS 217
RYL R RR+E+AN L LTERQIKIWFQNRRMK+KK+ L+ GG + + S
Sbjct: 214 RYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQKGKGMLTSSGGQSPSRS 267
>gi|13562112 homeobox A3 isoform a [Homo sapiens]
Length = 443
Score = 97.8 bits (242), Expect = 7e-21
Identities = 54/114 (47%), Positives = 68/114 (59%), Gaps = 17/114 (14%)
Query: 121 QIYPWMQRM---------NSHSGVGYGADR--------RRGRQIYSRYQTLELEKEFHFN 163
QI+PWM+ +S SG D+ +R R Y+ Q +ELEKEFHFN
Sbjct: 154 QIFPWMKESRQNTKQKTSSSSSGESCAGDKSPPGQASSKRARTAYTSAQLVELEKEFHFN 213
Query: 164 RYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKKESNLTSTLSGGGGGATADS 217
RYL R RR+E+AN L LTERQIKIWFQNRRMK+KK+ L+ GG + + S
Sbjct: 214 RYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQKGKGMLTSSGGQSPSRS 267
>gi|4557673 pancreatic and duodenal homeobox 1 [Homo sapiens]
Length = 283
Score = 96.7 bits (239), Expect = 2e-20
Identities = 52/103 (50%), Positives = 65/103 (63%), Gaps = 12/103 (11%)
Query: 123 YPWMQRMNSHSGVGYGA---------DRRRGRQIYSRYQTLELEKEFHFNRYLTRRRRIE 173
+PWM+ +H+ G A + +R R Y+R Q LELEKEF FN+Y++R RR+E
Sbjct: 119 FPWMKSTKAHAWKGQWAGGAYAAEPEENKRTRTAYTRAQLLELEKEFLFNKYISRPRRVE 178
Query: 174 IANALCLTERQIKIWFQNRRMKWKKESNLT---STLSGGGGGA 213
+A L LTER IKIWFQNRRMKWKKE + T GGGG A
Sbjct: 179 LAVMLNLTERHIKIWFQNRRMKWKKEEDKKRGGGTAVGGGGVA 221
>gi|24497515 homeobox A3 isoform b [Homo sapiens]
Length = 285
Score = 93.6 bits (231), Expect = 1e-19
Identities = 46/79 (58%), Positives = 56/79 (70%)
Query: 139 ADRRRGRQIYSRYQTLELEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKK 198
A +R R Y+ Q +ELEKEFHFNRYL R RR+E+AN L LTERQIKIWFQNRRMK+KK
Sbjct: 31 ASSKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKK 90
Query: 199 ESNLTSTLSGGGGGATADS 217
+ L+ GG + + S
Sbjct: 91 DQKGKGMLTSSGGQSPSRS 109
>gi|84570137 homeobox B3 [Homo sapiens]
Length = 431
Score = 93.2 bits (230), Expect = 2e-19
Identities = 46/79 (58%), Positives = 55/79 (69%)
Query: 139 ADRRRGRQIYSRYQTLELEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKK 198
A +R R Y+ Q +ELEKEFHFNRYL R RR+E+AN L L+ERQIKIWFQNRRMK+KK
Sbjct: 186 AASKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLSERQIKIWFQNRRMKYKK 245
Query: 199 ESNLTSTLSGGGGGATADS 217
+ S GG + A S
Sbjct: 246 DQKAKGLASSSGGPSPAGS 264
>gi|10140847 homeobox A2 [Homo sapiens]
Length = 376
Score = 92.8 bits (229), Expect = 2e-19
Identities = 50/97 (51%), Positives = 61/97 (62%), Gaps = 4/97 (4%)
Query: 136 GYGADRRRGRQIYSRYQTLELEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMK 195
G G RR R Y+ Q LELEKEFHFN+YL R RR+EIA L LTERQ+K+WFQNRRMK
Sbjct: 138 GSGGGSRRLRTAYTNTQLLELEKEFHFNKYLCRPRRVEIAALLDLTERQVKVWFQNRRMK 197
Query: 196 WKKESNLTSTLSGGGGGATADSLGGKEEKREETEEEK 232
K+++ + G + + EK EE EEEK
Sbjct: 198 HKRQTQCKENQNSEGKCKSLED----SEKVEEDEEEK 230
>gi|19923391 homeobox D3 [Homo sapiens]
Length = 432
Score = 91.7 bits (226), Expect = 5e-19
Identities = 52/103 (50%), Positives = 63/103 (61%), Gaps = 15/103 (14%)
Query: 119 SIQIYPWMQ-------RMNSHSGVGY--------GADRRRGRQIYSRYQTLELEKEFHFN 163
S QI+PWM+ + NS + G G +R R Y+ Q +ELEKEFHFN
Sbjct: 157 SKQIFPWMKESRQNSKQKNSCATAGESCEDKSPPGPASKRVRTAYTSAQLVELEKEFHFN 216
Query: 164 RYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKKESNLTSTL 206
RYL R RR+E+AN L LTERQIKIWFQNRRMK+KK+ L
Sbjct: 217 RYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQKAKGIL 259
>gi|194363768 homeobox D9 [Homo sapiens]
Length = 352
Score = 87.8 bits (216), Expect = 7e-18
Identities = 60/146 (41%), Positives = 81/146 (55%), Gaps = 14/146 (9%)
Query: 66 SRGPYDYGSNSFYQEKDMLSNCRQNT---LGHNTQTSIAQDFSSEQGRTAP-----QDQK 117
S GP ++ NSF QEK + +G T T + + S+ P +++K
Sbjct: 202 SSGP-EFSCNSFLQEKAAAATGGTGPGAGIGAATGTGGSSEPSACSDHPIPGCSLKEEEK 260
Query: 118 ASIQIYPWMQRMNSHSGVG---YGADRRRGRQIYSRYQTLELEKEFHFNRYLTRRRRIEI 174
Q P Q+++ ++ + R+ R Y++YQTLELEKEF FN YLTR RR E+
Sbjct: 261 QHSQ--PQQQQLDPNNPAANWIHARSTRKKRCPYTKYQTLELEKEFLFNMYLTRDRRYEV 318
Query: 175 ANALCLTERQIKIWFQNRRMKWKKES 200
A L LTERQ+KIWFQNRRMK KK S
Sbjct: 319 ARILNLTERQVKIWFQNRRMKMKKMS 344
>gi|89257348 homeo box HB9 [Homo sapiens]
Length = 401
Score = 85.1 bits (209), Expect = 5e-17
Identities = 49/113 (43%), Positives = 61/113 (53%), Gaps = 10/113 (8%)
Query: 122 IYPWMQRMNSHSGVGYGADRRRGRQIYSRYQTLELEKEFHFNRYLTRRRRIEIANALCLT 181
I P M NS + RR R ++ Q LELE +F N+YL+R +R E+A +L LT
Sbjct: 222 ILPKMPDFNSQAQSNLLGKCRRPRTAFTSQQLLELEHQFKLNKYLSRPKRFEVATSLMLT 281
Query: 182 ERQIKIWFQNRRMKWKKESNLTSTLS-------GGGGGATADSLGGKEEKREE 227
E Q+KIWFQNRRMKWK+ + GGGGGA GG EE E
Sbjct: 282 ETQVKIWFQNRRMKWKRSKKAKEQAAQEAEKQKGGGGGA---GKGGAEEPGAE 331
>gi|24497547 homeobox C9 [Homo sapiens]
Length = 260
Score = 84.3 bits (207), Expect = 8e-17
Identities = 41/57 (71%), Positives = 46/57 (80%)
Query: 142 RRGRQIYSRYQTLELEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKK 198
R+ R Y++YQTLELEKEF FN YLTR RR E+A L LTERQ+KIWFQNRRMK KK
Sbjct: 193 RKKRCPYTKYQTLELEKEFLFNMYLTRDRRYEVARVLNLTERQVKIWFQNRRMKMKK 249
>gi|4504465 homeobox B2 [Homo sapiens]
Length = 356
Score = 84.3 bits (207), Expect = 8e-17
Identities = 40/63 (63%), Positives = 48/63 (76%)
Query: 138 GADRRRGRQIYSRYQTLELEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWK 197
G RR R Y+ Q LELEKEFHFN+YL R RR+EIA L LTERQ+K+WFQNRRMK K
Sbjct: 140 GGGARRLRTAYTNTQLLELEKEFHFNKYLCRPRRVEIAALLDLTERQVKVWFQNRRMKHK 199
Query: 198 KES 200
+++
Sbjct: 200 RQT 202
>gi|23510366 homeobox D10 [Homo sapiens]
Length = 340
Score = 82.0 bits (201), Expect = 4e-16
Identities = 39/59 (66%), Positives = 49/59 (83%)
Query: 142 RRGRQIYSRYQTLELEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKKES 200
R+ R Y+++QTLELEKEF FN YLTR RR+EI+ ++ LT+RQ+KIWFQNRRMK KK S
Sbjct: 267 RKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISKSVNLTDRQVKIWFQNRRMKLKKMS 325
>gi|23097236 homeobox A9 [Homo sapiens]
Length = 272
Score = 82.0 bits (201), Expect = 4e-16
Identities = 40/57 (70%), Positives = 46/57 (80%)
Query: 142 RRGRQIYSRYQTLELEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKK 198
R+ R Y+++QTLELEKEF FN YLTR RR E+A L LTERQ+KIWFQNRRMK KK
Sbjct: 207 RKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKK 263
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.129 0.378
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,308,278
Number of Sequences: 37866
Number of extensions: 398808
Number of successful extensions: 2657
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 258
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 2275
Number of HSP's gapped (non-prelim): 384
length of query: 235
length of database: 18,247,518
effective HSP length: 99
effective length of query: 136
effective length of database: 14,498,784
effective search space: 1971834624
effective search space used: 1971834624
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.