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Search of human proteins with 4758420
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|4758420 glial cells missing homolog 2 [Homo sapiens]
(506 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|4758420 glial cells missing homolog 2 [Homo sapiens] 1073 0.0
gi|45269133 glial cells missing homolog a [Homo sapiens] 238 1e-62
gi|4505939 DNA-directed RNA polymerase II A [Homo sapiens] 38 0.025
gi|238624188 diffuse panbronchiolitis critical region 1 protein ... 37 0.055
gi|239740773 PREDICTED: similar to diffuse panbronchiolitis crit... 37 0.055
gi|157817073 Cdc2-related kinase, arginine/serine-rich isoform 2... 35 0.21
gi|157817023 Cdc2-related kinase, arginine/serine-rich isoform 1... 35 0.21
gi|7657387 CCR4-NOT transcription complex, subunit 3 [Homo sapiens] 34 0.36
gi|90819229 cutaneous T-cell lymphoma-associated antigen 1 isofo... 33 0.47
gi|21264565 AT rich interactive domain 1A isoform a [Homo sapiens] 33 0.61
gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens] 33 0.61
gi|5174681 SIX homeobox 1 [Homo sapiens] 33 0.80
gi|23397666 transcriptional co-repressor Sin3A [Homo sapiens] 32 1.0
gi|223941785 transcriptional co-repressor Sin3A [Homo sapiens] 32 1.0
gi|223941782 transcriptional co-repressor Sin3A [Homo sapiens] 32 1.0
gi|237757312 synaptojanin 1 isoform c [Homo sapiens] 32 1.0
gi|110347400 odz, odd Oz/ten-m homolog 1 isoform 3 [Homo sapiens] 32 1.4
gi|253970446 odz, odd Oz/ten-m homolog 1 isoform 2 [Homo sapiens] 32 1.4
gi|253970444 odz, odd Oz/ten-m homolog 1 isoform 1 [Homo sapiens] 32 1.4
gi|4757918 runt-related transcription factor 3 isoform 2 [Homo s... 32 1.4
gi|72534652 runt-related transcription factor 3 isoform 1 [Homo ... 32 1.4
gi|239748384 PREDICTED: hypothetical protein XP_002346651 [Homo ... 32 1.4
gi|239742312 PREDICTED: hypothetical protein XP_002342488 [Homo ... 32 1.4
gi|150170722 G protein-coupled receptor 50 [Homo sapiens] 32 1.4
gi|41281981 toll-like receptor adaptor molecule 1 [Homo sapiens] 32 1.8
gi|122937496 WAS/WASL interacting protein family, member 3 [Homo... 32 1.8
gi|50897850 KIAA1914 protein isoform 1 [Homo sapiens] 32 1.8
gi|24308338 KIAA1914 protein isoform 2 [Homo sapiens] 32 1.8
gi|7662010 zinc finger protein 516 [Homo sapiens] 32 1.8
gi|146134388 YLP motif containing 1 [Homo sapiens] 32 1.8
>gi|4758420 glial cells missing homolog 2 [Homo sapiens]
Length = 506
Score = 1073 bits (2774), Expect = 0.0
Identities = 506/506 (100%), Positives = 506/506 (100%)
Query: 1 MPAAAVQEAVGVCSYGMQLSWDINDPQMPQELALFDQFREWPDGYVRFIYSSDEKKAQRH 60
MPAAAVQEAVGVCSYGMQLSWDINDPQMPQELALFDQFREWPDGYVRFIYSSDEKKAQRH
Sbjct: 1 MPAAAVQEAVGVCSYGMQLSWDINDPQMPQELALFDQFREWPDGYVRFIYSSDEKKAQRH 60
Query: 61 LSGWAMRNTNNHNGHILKKSCLGVVVCTQACTLPDGSRLQLRPAICDKARLKQQKKACPN 120
LSGWAMRNTNNHNGHILKKSCLGVVVCTQACTLPDGSRLQLRPAICDKARLKQQKKACPN
Sbjct: 61 LSGWAMRNTNNHNGHILKKSCLGVVVCTQACTLPDGSRLQLRPAICDKARLKQQKKACPN 120
Query: 121 CHSALELIPCRGHSGYPVTNFWRLDGNAIFFQAKGVHDHPRPESKSETEARRSAIKRQMA 180
CHSALELIPCRGHSGYPVTNFWRLDGNAIFFQAKGVHDHPRPESKSETEARRSAIKRQMA
Sbjct: 121 CHSALELIPCRGHSGYPVTNFWRLDGNAIFFQAKGVHDHPRPESKSETEARRSAIKRQMA 180
Query: 181 SFYQPQKKRIRESEAEENQDSSGHFSNIPPLENPEDFDIVTETSFPIPGQPCPSFPKSDV 240
SFYQPQKKRIRESEAEENQDSSGHFSNIPPLENPEDFDIVTETSFPIPGQPCPSFPKSDV
Sbjct: 181 SFYQPQKKRIRESEAEENQDSSGHFSNIPPLENPEDFDIVTETSFPIPGQPCPSFPKSDV 240
Query: 241 YKATCDLATFQGDKMPPFQKYSSPRIYLPRPPCSYELANPGYTNSSPYPTLYKDSTSIPN 300
YKATCDLATFQGDKMPPFQKYSSPRIYLPRPPCSYELANPGYTNSSPYPTLYKDSTSIPN
Sbjct: 241 YKATCDLATFQGDKMPPFQKYSSPRIYLPRPPCSYELANPGYTNSSPYPTLYKDSTSIPN 300
Query: 301 DTDWVHLNTLQCNVNSYSSYERSFDFTNKQHGWKPALGKPSLVERTNHGQFQAMATRPYY 360
DTDWVHLNTLQCNVNSYSSYERSFDFTNKQHGWKPALGKPSLVERTNHGQFQAMATRPYY
Sbjct: 301 DTDWVHLNTLQCNVNSYSSYERSFDFTNKQHGWKPALGKPSLVERTNHGQFQAMATRPYY 360
Query: 361 NPELPCRYLTTPPPGAPALQTVITTTTKVSYQAYQPPAMKYSDSVREVKSLSSCNYAPED 420
NPELPCRYLTTPPPGAPALQTVITTTTKVSYQAYQPPAMKYSDSVREVKSLSSCNYAPED
Sbjct: 361 NPELPCRYLTTPPPGAPALQTVITTTTKVSYQAYQPPAMKYSDSVREVKSLSSCNYAPED 420
Query: 421 TGMSVYPEPWGPPVTVTRAASPSGPPPMKIAGDCRAIRPTVAIPHEPVSSRTDEAETWDV 480
TGMSVYPEPWGPPVTVTRAASPSGPPPMKIAGDCRAIRPTVAIPHEPVSSRTDEAETWDV
Sbjct: 421 TGMSVYPEPWGPPVTVTRAASPSGPPPMKIAGDCRAIRPTVAIPHEPVSSRTDEAETWDV 480
Query: 481 CLSGLGSAVSYSDRVGPFFTYNNEDF 506
CLSGLGSAVSYSDRVGPFFTYNNEDF
Sbjct: 481 CLSGLGSAVSYSDRVGPFFTYNNEDF 506
>gi|45269133 glial cells missing homolog a [Homo sapiens]
Length = 436
Score = 238 bits (606), Expect = 1e-62
Identities = 106/158 (67%), Positives = 124/158 (78%)
Query: 19 LSWDINDPQMPQELALFDQFREWPDGYVRFIYSSDEKKAQRHLSGWAMRNTNNHNGHILK 78
LSWDIND ++PQ + D F+EWPD Y + IYSS++K AQRHLS WAMRNTNNHN ILK
Sbjct: 14 LSWDINDVKLPQNVKKTDWFQEWPDSYAKHIYSSEDKNAQRHLSSWAMRNTNNHNSRILK 73
Query: 79 KSCLGVVVCTQACTLPDGSRLQLRPAICDKARLKQQKKACPNCHSALELIPCRGHSGYPV 138
KSCLGVVVC + C +G ++ LRPAICDKAR KQQ+K CPNC L+LIPCRGH G+PV
Sbjct: 74 KSCLGVVVCGRDCLAEEGRKIYLRPAICDKARQKQQRKRCPNCDGPLKLIPCRGHGGFPV 133
Query: 139 TNFWRLDGNAIFFQAKGVHDHPRPESKSETEARRSAIK 176
TNFWR DG IFFQ+KG HDHP+PE+K E EARR+ K
Sbjct: 134 TNFWRHDGRFIFFQSKGEHDHPKPETKLEAEARRAMKK 171
>gi|4505939 DNA-directed RNA polymerase II A [Homo sapiens]
Length = 1970
Score = 37.7 bits (86), Expect = 0.025
Identities = 59/226 (26%), Positives = 83/226 (36%), Gaps = 31/226 (13%)
Query: 226 PIPGQPCPSFPKSDVYKATCDLATFQGDKMPPFQKYSSPRIYLPRPPCSYELANPGYTNS 285
P PG P P S + G M P +SP Y PR P Y +P Y+ +
Sbjct: 1567 PTPGSPGSPGPSSPYIPSP-------GGAMSPSYSPTSPA-YEPRSPGGYTPQSPSYSPT 1618
Query: 286 SP--YPTLYKDSTSIPNDTDWVHLNTLQCNVNSYSSYERSFDFTNKQHG-WKPALGKPSL 342
SP PT S + PN + SYS S+ T+ + P+ S
Sbjct: 1619 SPSYSPTSPSYSPTSPNYSP---------TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1669
Query: 343 VERTNHGQFQAMATRPYYNPELPCRYLTTPPPGAPALQTVITTTTKVS--YQAYQPPAMK 400
+ T P Y+P P Y T P +P + T+ S +Y P +
Sbjct: 1670 SYSPTSPSYS--PTSPSYSPTSP-SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1726
Query: 401 YSDSVREVKSLSSCNYAPEDTGMSVYPEPWGPPVTVTRAA-SPSGP 445
YS + S +S +Y+P S P P T T + SP+ P
Sbjct: 1727 YSPTSPSY-SPTSPSYSPTSPNYS----PTSPNYTPTSPSYSPTSP 1767
>gi|238624188 diffuse panbronchiolitis critical region 1 protein
[Homo sapiens]
Length = 1393
Score = 36.6 bits (83), Expect = 0.055
Identities = 55/218 (25%), Positives = 84/218 (38%), Gaps = 26/218 (11%)
Query: 168 TEARRS-AIKRQMASFYQPQKKRIRESEAEENQDSSGHFSNIPPLENPEDFDIVTETSFP 226
TE R + A ++ S +P + R A E SS + P E+ E + E + P
Sbjct: 480 TENRETTANEKTTPSPAEPTENGQRTPFANEKTTSS----SAEPTEHGERTPLANENTTP 535
Query: 227 IPGQPCPSFPKSDVYKATCDLA--TFQGDKMPPFQKYSSPRIYLP-----RPPCSYELAN 279
P +P + ++ K T A T GD+ P + ++P + P R P AN
Sbjct: 536 SPAEPTENRERTANEKTTPSPAEPTENGDRTPLANEKTTPSLAEPTENGQRTP----FAN 591
Query: 280 PGYTNSSPYPTLYKDSTSIPNDTDWVHLNTLQCNVNSYSSYERSFDFTNKQHGWKPALGK 339
T+SS PT +++ T + N+ NT + ER+ N+ PA G
Sbjct: 592 EKTTSSSAEPTEHEERTPLANE------NTTPSPAEPTENRERT---ANENTTPSPA-GP 641
Query: 340 PSLVERTNHGQFQAMATRPYYNPELPCRYLTTPPPGAP 377
E T + + P N E TT P P
Sbjct: 642 TENREMTANEKTTLFPAEPTENRERTANEKTTSSPAEP 679
>gi|239740773 PREDICTED: similar to diffuse panbronchiolitis
critical region 1 [Homo sapiens]
Length = 1400
Score = 36.6 bits (83), Expect = 0.055
Identities = 55/218 (25%), Positives = 84/218 (38%), Gaps = 26/218 (11%)
Query: 168 TEARRS-AIKRQMASFYQPQKKRIRESEAEENQDSSGHFSNIPPLENPEDFDIVTETSFP 226
TE R + A ++ S +P + R A E SS + P E+ E + E + P
Sbjct: 542 TENRETTANEKTTPSPAEPTENGQRTPFANEKTTSS----SAEPTEHGERTPLANENTTP 597
Query: 227 IPGQPCPSFPKSDVYKATCDLA--TFQGDKMPPFQKYSSPRIYLP-----RPPCSYELAN 279
P +P + ++ K T A T GD+ P + ++P + P R P AN
Sbjct: 598 SPAEPTENRERTANEKTTPSPAEPTENGDRTPLANEKTTPSLAEPTENGQRTP----FAN 653
Query: 280 PGYTNSSPYPTLYKDSTSIPNDTDWVHLNTLQCNVNSYSSYERSFDFTNKQHGWKPALGK 339
T+SS PT +++ T + N+ NT + ER+ N+ PA G
Sbjct: 654 EKTTSSSAEPTEHEERTPLANE------NTTPSPAEPTENRERT---ANENTTPSPA-GP 703
Query: 340 PSLVERTNHGQFQAMATRPYYNPELPCRYLTTPPPGAP 377
E T + + P N E TT P P
Sbjct: 704 TENREMTANEKTTLFPAEPTENRERTANEKTTSSPAEP 741
>gi|157817073 Cdc2-related kinase, arginine/serine-rich isoform 2
[Homo sapiens]
Length = 1481
Score = 34.7 bits (78), Expect = 0.21
Identities = 73/352 (20%), Positives = 120/352 (34%), Gaps = 58/352 (16%)
Query: 133 HSGYPVTNFWRLDGNAIFFQAKGVHDHPRPESKSETEARRSAIKRQMASFYQPQKKRIRE 192
+SG + + R ++ F + + P P KS RS + +S + +K+
Sbjct: 319 YSGRSPSPYGRRRSSSPFLSKRSLSRSPLPSRKSMKSRSRSPAYSRHSSSHSKKKR---- 374
Query: 193 SEAEENQDSSGHFSNIPPLENPEDFDIVTETSFPIPGQPCPSFPKSDVYKATCDLATFQG 252
S S+I P+ P + + E S K A
Sbjct: 375 ------SSSRSRHSSISPVRLPLNSSLGAELS----------------RKKKERAAAAAA 412
Query: 253 DKMPPFQKYSSPRIYLPRPPCSYELANPGYTNSSPYPTLYKDSTSIPNDTDWVHLNTLQC 312
KM + SP ++LPR S A S P K S P DT+ V++ L
Sbjct: 413 AKMDGKESKGSP-VFLPRKENSSVEAKDSGLESKKLPRSVKLEKSAP-DTELVNVTHLNT 470
Query: 313 NV-NSYSSYERSFDFTNKQH-----------GWKPALGKPSLV--ERTNHGQFQAMATRP 358
V NS + + D +++H KP K +V + T + + P
Sbjct: 471 EVKNSSDTGKVKLDENSEKHLVKDLKAQGTRDSKPIALKEEIVTPKETETSEKETPPPLP 530
Query: 359 YYNPELPCRYLTTPPPGAPALQTVITTTTKVSYQAYQPPAMKYSDSVREVKSLSSCNYAP 418
P TTPPP P L + + QPP + +V + S+ P
Sbjct: 531 TIASPPPPLPTTTPPPQTPPLPPL----PPIPALPQQPPLPPSQPAFSQVPASSTSTLPP 586
Query: 419 EDTGMSVYPEPWGPPVTVTRAASPSGPPPMKIAGDCRAIRPTVAIPHEPVSS 470
T ++ + PP++++ + + T AIPH S+
Sbjct: 587 STHSK-----------TSAVSSQANSQPPVQVSVKTQ-VSVTAAIPHLKTST 626
>gi|157817023 Cdc2-related kinase, arginine/serine-rich isoform 1
[Homo sapiens]
Length = 1490
Score = 34.7 bits (78), Expect = 0.21
Identities = 73/352 (20%), Positives = 120/352 (34%), Gaps = 58/352 (16%)
Query: 133 HSGYPVTNFWRLDGNAIFFQAKGVHDHPRPESKSETEARRSAIKRQMASFYQPQKKRIRE 192
+SG + + R ++ F + + P P KS RS + +S + +K+
Sbjct: 319 YSGRSPSPYGRRRSSSPFLSKRSLSRSPLPSRKSMKSRSRSPAYSRHSSSHSKKKR---- 374
Query: 193 SEAEENQDSSGHFSNIPPLENPEDFDIVTETSFPIPGQPCPSFPKSDVYKATCDLATFQG 252
S S+I P+ P + + E S K A
Sbjct: 375 ------SSSRSRHSSISPVRLPLNSSLGAELS----------------RKKKERAAAAAA 412
Query: 253 DKMPPFQKYSSPRIYLPRPPCSYELANPGYTNSSPYPTLYKDSTSIPNDTDWVHLNTLQC 312
KM + SP ++LPR S A S P K S P DT+ V++ L
Sbjct: 413 AKMDGKESKGSP-VFLPRKENSSVEAKDSGLESKKLPRSVKLEKSAP-DTELVNVTHLNT 470
Query: 313 NV-NSYSSYERSFDFTNKQH-----------GWKPALGKPSLV--ERTNHGQFQAMATRP 358
V NS + + D +++H KP K +V + T + + P
Sbjct: 471 EVKNSSDTGKVKLDENSEKHLVKDLKAQGTRDSKPIALKEEIVTPKETETSEKETPPPLP 530
Query: 359 YYNPELPCRYLTTPPPGAPALQTVITTTTKVSYQAYQPPAMKYSDSVREVKSLSSCNYAP 418
P TTPPP P L + + QPP + +V + S+ P
Sbjct: 531 TIASPPPPLPTTTPPPQTPPLPPL----PPIPALPQQPPLPPSQPAFSQVPASSTSTLPP 586
Query: 419 EDTGMSVYPEPWGPPVTVTRAASPSGPPPMKIAGDCRAIRPTVAIPHEPVSS 470
T ++ + PP++++ + + T AIPH S+
Sbjct: 587 STHSK-----------TSAVSSQANSQPPVQVSVKTQ-VSVTAAIPHLKTST 626
>gi|7657387 CCR4-NOT transcription complex, subunit 3 [Homo sapiens]
Length = 753
Score = 33.9 bits (76), Expect = 0.36
Identities = 43/176 (24%), Positives = 59/176 (33%), Gaps = 23/176 (13%)
Query: 271 PPCSYELANPGYTNSSPYPTLYKDSTSIPNDTDWVHLNTLQCNVNSYSSYERSFDFTNKQ 330
PP + + + SS PT S+ IP + C + ++ T+ +
Sbjct: 243 PPSHSHMEDEIFNQSSSTPTSTTSSSPIPP-------SPANCTTENSEDDKKRGRSTDSE 295
Query: 331 HGWKPALGKPSLVERTNHGQFQAMATRPYYNPELPCRYLTTPPPGAPALQTVITTTTKVS 390
PA V H Q +P +P Y + PPP A AL TT
Sbjct: 296 VSQSPAKNGSKPVHSNQHPQ----------SPAVPPTYPSGPPPAASALS---TTPGNNG 342
Query: 391 YQAYQPPAMKYSDSVREVKSLSSCNYAPEDTGMSVYPEPWGPPVTVTRAAS--PSG 444
A P S +S AP ++ P P GP T R S PSG
Sbjct: 343 VPAPAAPPSALGPKASPAPSHNSGTPAPYAQAVAP-PAPSGPSTTQPRPPSVQPSG 397
>gi|90819229 cutaneous T-cell lymphoma-associated antigen 1 isoform
1 [Homo sapiens]
Length = 745
Score = 33.5 bits (75), Expect = 0.47
Identities = 32/124 (25%), Positives = 48/124 (38%), Gaps = 8/124 (6%)
Query: 166 SETEARRSAIKRQMASFYQPQKKRIRESEAEENQDSSGHFSNIPPLENPED--FDIVTET 223
SE E+ R+ K + + P E+EA +G PPL F + T
Sbjct: 626 SEMESSRNDTKDNLGNLKVPDSSLPAENEA------TGPGFVPPPLAPIRGLLFPVDTRG 679
Query: 224 SFPIPGQPCPSFPKSDVYKATCDLATFQGDKMPPFQKYSSPRIYLPRPPCSYELANPGYT 283
F G P P P V+ A+ D + + PP ++ +YLPR Y P +
Sbjct: 680 PFIRRGPPFPPPPPGTVFGASPDYFSPRDVPGPPRAPFAMRNVYLPRGFLPYRPPRPAFF 739
Query: 284 NSSP 287
+P
Sbjct: 740 PPAP 743
>gi|21264565 AT rich interactive domain 1A isoform a [Homo sapiens]
Length = 2285
Score = 33.1 bits (74), Expect = 0.61
Identities = 35/111 (31%), Positives = 47/111 (42%), Gaps = 19/111 (17%)
Query: 344 ERTNH-GQFQAMATR-PYYNPELPCRYLTTPPPG----APALQTVITTTTKVSYQAYQPP 397
+R NH G + + TR P Y P P +T PPP P++Q I +VS A P
Sbjct: 1537 QRANHEGSWPSHGTRQPPYGPSAPVPPMTRPPPSNYQPPPSMQNHI---PQVSSPAPLPR 1593
Query: 398 AMKYSDSVREVKSLSSCNYAPEDTGMSVYPEPWGPPVTVTRAASPSGPPPM 448
M+ S + L S GM + + GPPV + A PPM
Sbjct: 1594 PMENRTSPSKSPFLHS--------GMKM--QKAGPPVPASHIAPAPVQPPM 1634
>gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens]
Length = 904
Score = 33.1 bits (74), Expect = 0.61
Identities = 55/231 (23%), Positives = 76/231 (32%), Gaps = 61/231 (26%)
Query: 254 KMPPFQKYSSP--RIYLPRPPCSYELANPGYTNSSPYPTLYKDSTSIPNDTDWVHLNTLQ 311
+ P ++YS P R Y P PP A+P P P + S S P H
Sbjct: 589 RSPSPRRYSPPIQRRYSPSPPPKRRTASP------PPPPKRRASPSPPPKRRVSH----- 637
Query: 312 CNVNSYSSYERSFDFTNKQHGWKPALGKPSLVERTNHGQFQAMATRPYYNPELPCRYLTT 371
S +RS T ++ PSL + G + +TR +P+ R+ +
Sbjct: 638 ----SPPPKQRSSPVTKRR--------SPSLSSKHRKGSSPSRSTREARSPQPNKRHSPS 685
Query: 372 PPPGAPALQT---VITTTTKVSYQAYQPP----------------------AMKYSDSVR 406
P P AP + + S Q Q P A SVR
Sbjct: 686 PRPRAPQTSSSPPPVRRGASSSPQRRQSPSPSTRPIRRVSRTPEPKKIKKAASPSPQSVR 745
Query: 407 EVKSLSSCNYAPEDTGMSVYPEP-----------WGPPVTVTRAASPSGPP 446
V S S + +PE P W P V V +A SP+ P
Sbjct: 746 RVSSSRSVSGSPEPAAKKPPAPPSPVQSQSPSTNWSPAVPVKKAKSPTPSP 796
>gi|5174681 SIX homeobox 1 [Homo sapiens]
Length = 284
Score = 32.7 bits (73), Expect = 0.80
Identities = 20/79 (25%), Positives = 36/79 (45%), Gaps = 6/79 (7%)
Query: 159 HPRPESKSETEARRSAIKRQMASFYQPQKKRIRESEAEE------NQDSSGHFSNIPPLE 212
+P P K E Q++++++ +++R R +EA+E N SS + + PLE
Sbjct: 148 YPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAAEAKERENTENNNSSSNKQNQLSPLE 207
Query: 213 NPEDFDIVTETSFPIPGQP 231
+ +E F P P
Sbjct: 208 GGKPLMSSSEEEFSPPQSP 226
>gi|23397666 transcriptional co-repressor Sin3A [Homo sapiens]
Length = 1273
Score = 32.3 bits (72), Expect = 1.0
Identities = 25/83 (30%), Positives = 34/83 (40%), Gaps = 7/83 (8%)
Query: 209 PPLENPEDFDIVTETSFPIPGQPCPSFPKSDVYK-ATCDLATFQGDKMPPFQKYSSPRI- 266
PP ++P + S P P QP P P + V K + T + PP Y+SPR
Sbjct: 222 PPPQHPSQ---PSAQSAPAPAQPAPQPPPAKVSKPSQLQAHTPASQQTPPLPPYASPRSP 278
Query: 267 -YLPRPPCSYELAN-PGYTNSSP 287
P P + L P N+ P
Sbjct: 279 PVQPHTPVTISLGTAPSLQNNQP 301
Score = 29.6 bits (65), Expect = 6.7
Identities = 16/87 (18%), Positives = 37/87 (42%), Gaps = 3/87 (3%)
Query: 389 VSYQAYQPPAMKYSDSVREVKSLSSCNYAPEDTGMSVYPEPWGPPVTVTRAASPSGPPPM 448
+ + + PP K ++ ++++ + + P+P PP ++ ++ S P P
Sbjct: 180 MGFNTFLPPGYKIEVQTNDMVNVTTPGQVHQIPTHGIQPQPQPPPQHPSQPSAQSAPAPA 239
Query: 449 KIAGD---CRAIRPTVAIPHEPVSSRT 472
+ A + +P+ H P S +T
Sbjct: 240 QPAPQPPPAKVSKPSQLQAHTPASQQT 266
>gi|223941785 transcriptional co-repressor Sin3A [Homo sapiens]
Length = 1273
Score = 32.3 bits (72), Expect = 1.0
Identities = 25/83 (30%), Positives = 34/83 (40%), Gaps = 7/83 (8%)
Query: 209 PPLENPEDFDIVTETSFPIPGQPCPSFPKSDVYK-ATCDLATFQGDKMPPFQKYSSPRI- 266
PP ++P + S P P QP P P + V K + T + PP Y+SPR
Sbjct: 222 PPPQHPSQ---PSAQSAPAPAQPAPQPPPAKVSKPSQLQAHTPASQQTPPLPPYASPRSP 278
Query: 267 -YLPRPPCSYELAN-PGYTNSSP 287
P P + L P N+ P
Sbjct: 279 PVQPHTPVTISLGTAPSLQNNQP 301
Score = 29.6 bits (65), Expect = 6.7
Identities = 16/87 (18%), Positives = 37/87 (42%), Gaps = 3/87 (3%)
Query: 389 VSYQAYQPPAMKYSDSVREVKSLSSCNYAPEDTGMSVYPEPWGPPVTVTRAASPSGPPPM 448
+ + + PP K ++ ++++ + + P+P PP ++ ++ S P P
Sbjct: 180 MGFNTFLPPGYKIEVQTNDMVNVTTPGQVHQIPTHGIQPQPQPPPQHPSQPSAQSAPAPA 239
Query: 449 KIAGD---CRAIRPTVAIPHEPVSSRT 472
+ A + +P+ H P S +T
Sbjct: 240 QPAPQPPPAKVSKPSQLQAHTPASQQT 266
>gi|223941782 transcriptional co-repressor Sin3A [Homo sapiens]
Length = 1273
Score = 32.3 bits (72), Expect = 1.0
Identities = 25/83 (30%), Positives = 34/83 (40%), Gaps = 7/83 (8%)
Query: 209 PPLENPEDFDIVTETSFPIPGQPCPSFPKSDVYK-ATCDLATFQGDKMPPFQKYSSPRI- 266
PP ++P + S P P QP P P + V K + T + PP Y+SPR
Sbjct: 222 PPPQHPSQ---PSAQSAPAPAQPAPQPPPAKVSKPSQLQAHTPASQQTPPLPPYASPRSP 278
Query: 267 -YLPRPPCSYELAN-PGYTNSSP 287
P P + L P N+ P
Sbjct: 279 PVQPHTPVTISLGTAPSLQNNQP 301
Score = 29.6 bits (65), Expect = 6.7
Identities = 16/87 (18%), Positives = 37/87 (42%), Gaps = 3/87 (3%)
Query: 389 VSYQAYQPPAMKYSDSVREVKSLSSCNYAPEDTGMSVYPEPWGPPVTVTRAASPSGPPPM 448
+ + + PP K ++ ++++ + + P+P PP ++ ++ S P P
Sbjct: 180 MGFNTFLPPGYKIEVQTNDMVNVTTPGQVHQIPTHGIQPQPQPPPQHPSQPSAQSAPAPA 239
Query: 449 KIAGD---CRAIRPTVAIPHEPVSSRT 472
+ A + +P+ H P S +T
Sbjct: 240 QPAPQPPPAKVSKPSQLQAHTPASQQT 266
>gi|237757312 synaptojanin 1 isoform c [Homo sapiens]
Length = 1295
Score = 32.3 bits (72), Expect = 1.0
Identities = 47/192 (24%), Positives = 65/192 (33%), Gaps = 32/192 (16%)
Query: 285 SSPYPTLYKDSTSIPNDTDWVHLNTLQCNVNSYSSYERSFDFTNKQHGWKPALG-KPSLV 343
SS TL + + D D ++ +V+ YS+ + Q LG PS
Sbjct: 992 SSTSSTLLGEDAEVAADFD------MEGDVDDYSAEVEELLPQHLQPSSSSGLGTSPSSS 1045
Query: 344 ERTNHGQFQAMATRPYYNPELPCRYLTTPP--PGAPALQTVITTTTKVSYQAYQPPAMKY 401
RT+ Q ++ P P LP R P PG P+ Q+ + + PA
Sbjct: 1046 PRTSPCQSPTISEGPV--PSLPIRPSRAPSRTPGPPSAQSSPIDAQPATPLPQKDPAQ-- 1101
Query: 402 SDSVREVKSLSSCNYAPEDTGMSVYPEPWGPPVTVTRAASPSGPPPMKIAGDCRAIRPTV 461
P + P P PP TR A P PPP A R
Sbjct: 1102 ----------------PLEPKRPPPPRPVAPP---TRPAPPQRPPPPSGARSPAPTRKEF 1142
Query: 462 AIPHEPVSSRTD 473
P P ++R D
Sbjct: 1143 GAPKSPGTTRKD 1154
>gi|110347400 odz, odd Oz/ten-m homolog 1 isoform 3 [Homo sapiens]
Length = 2725
Score = 32.0 bits (71), Expect = 1.4
Identities = 25/88 (28%), Positives = 30/88 (34%)
Query: 318 SSYERSFDFTNKQHGWKPALGKPSLVERTNHGQFQAMATRPYYNPELPCRYLTTPPPGAP 377
S E F F+ + G V+ + H QF P P C PPP A
Sbjct: 155 SDGENGFKFSPVCCDMEAQAGSTQDVQSSPHNQFTFRPLPPPPPPPHACTCARKPPPAAD 214
Query: 378 ALQTVITTTTKVSYQAYQPPAMKYSDSV 405
+LQ TT A P DSV
Sbjct: 215 SLQRRSMTTRSQPSPAAPAPPTSTQDSV 242
>gi|253970446 odz, odd Oz/ten-m homolog 1 isoform 2 [Homo sapiens]
Length = 2731
Score = 32.0 bits (71), Expect = 1.4
Identities = 25/88 (28%), Positives = 30/88 (34%)
Query: 318 SSYERSFDFTNKQHGWKPALGKPSLVERTNHGQFQAMATRPYYNPELPCRYLTTPPPGAP 377
S E F F+ + G V+ + H QF P P C PPP A
Sbjct: 155 SDGENGFKFSPVCCDMEAQAGSTQDVQSSPHNQFTFRPLPPPPPPPHACTCARKPPPAAD 214
Query: 378 ALQTVITTTTKVSYQAYQPPAMKYSDSV 405
+LQ TT A P DSV
Sbjct: 215 SLQRRSMTTRSQPSPAAPAPPTSTQDSV 242
>gi|253970444 odz, odd Oz/ten-m homolog 1 isoform 1 [Homo sapiens]
Length = 2732
Score = 32.0 bits (71), Expect = 1.4
Identities = 25/88 (28%), Positives = 30/88 (34%)
Query: 318 SSYERSFDFTNKQHGWKPALGKPSLVERTNHGQFQAMATRPYYNPELPCRYLTTPPPGAP 377
S E F F+ + G V+ + H QF P P C PPP A
Sbjct: 155 SDGENGFKFSPVCCDMEAQAGSTQDVQSSPHNQFTFRPLPPPPPPPHACTCARKPPPAAD 214
Query: 378 ALQTVITTTTKVSYQAYQPPAMKYSDSV 405
+LQ TT A P DSV
Sbjct: 215 SLQRRSMTTRSQPSPAAPAPPTSTQDSV 242
>gi|4757918 runt-related transcription factor 3 isoform 2 [Homo
sapiens]
Length = 415
Score = 32.0 bits (71), Expect = 1.4
Identities = 26/103 (25%), Positives = 39/103 (37%), Gaps = 13/103 (12%)
Query: 206 SNIPPLENPEDFD-------IVTETSFP-----IPGQPCPSFPKSDVYKATCDLATFQGD 253
S + P +P FD +TE+ FP PG +FP S T +++
Sbjct: 237 SELNPFSDPRQFDRSFPTLPTLTESRFPDPRMHYPGAMSAAFPYSATPSGT-SISSLSVA 295
Query: 254 KMPPFQKYSSPRIYLPRPPCSYELANPGYTNSSPYPTLYKDST 296
MP ++ + P P + P N SPY Y S+
Sbjct: 296 GMPATSRFHHTYLPPPYPGAPQNQSGPFQANPSPYHLYYGTSS 338
>gi|72534652 runt-related transcription factor 3 isoform 1 [Homo
sapiens]
Length = 429
Score = 32.0 bits (71), Expect = 1.4
Identities = 26/103 (25%), Positives = 39/103 (37%), Gaps = 13/103 (12%)
Query: 206 SNIPPLENPEDFD-------IVTETSFP-----IPGQPCPSFPKSDVYKATCDLATFQGD 253
S + P +P FD +TE+ FP PG +FP S T +++
Sbjct: 251 SELNPFSDPRQFDRSFPTLPTLTESRFPDPRMHYPGAMSAAFPYSATPSGT-SISSLSVA 309
Query: 254 KMPPFQKYSSPRIYLPRPPCSYELANPGYTNSSPYPTLYKDST 296
MP ++ + P P + P N SPY Y S+
Sbjct: 310 GMPATSRFHHTYLPPPYPGAPQNQSGPFQANPSPYHLYYGTSS 352
>gi|239748384 PREDICTED: hypothetical protein XP_002346651 [Homo
sapiens]
Length = 246
Score = 32.0 bits (71), Expect = 1.4
Identities = 27/86 (31%), Positives = 30/86 (34%), Gaps = 22/86 (25%)
Query: 361 NPELPCRYLTTPPPGAPALQTVITTTTKVSYQAYQPPAMKYSDSVREVKSLSSCNYAPED 420
NPE PCR TP PGAP LQ PP+ R + L AP
Sbjct: 179 NPERPCR--RTPAPGAPRLQPP------------PPPSCSCQPGSRSSECLEPERRAP-- 222
Query: 421 TGMSVYPEPWGPPVTVTRAASPSGPP 446
P P P AA+P P
Sbjct: 223 ------PRPANPAKRERAAAAPRSAP 242
>gi|239742312 PREDICTED: hypothetical protein XP_002342488 [Homo
sapiens]
Length = 246
Score = 32.0 bits (71), Expect = 1.4
Identities = 27/86 (31%), Positives = 30/86 (34%), Gaps = 22/86 (25%)
Query: 361 NPELPCRYLTTPPPGAPALQTVITTTTKVSYQAYQPPAMKYSDSVREVKSLSSCNYAPED 420
NPE PCR TP PGAP LQ PP+ R + L AP
Sbjct: 179 NPERPCR--RTPAPGAPRLQPP------------PPPSCSCQPGSRSSECLEPERRAP-- 222
Query: 421 TGMSVYPEPWGPPVTVTRAASPSGPP 446
P P P AA+P P
Sbjct: 223 ------PRPANPAKRERAAAAPRSAP 242
>gi|150170722 G protein-coupled receptor 50 [Homo sapiens]
Length = 617
Score = 32.0 bits (71), Expect = 1.4
Identities = 46/198 (23%), Positives = 75/198 (37%), Gaps = 41/198 (20%)
Query: 107 DKARLKQQKKACPNCHSALELIPCRGHSGYPVTNFWRLDGNAIFFQAKGVHDHPRPESKS 166
D+AR + + ACP A+E P V N L G+A HP+P S+S
Sbjct: 344 DQAREQDRAHACP----AVEETPMN------VRNV-PLPGDAAAGHPDRASGHPKPHSRS 392
Query: 167 ETEARRSAIKRQMASFYQPQKKRIRESEAEENQDSSGHFSNIPPLENPEDFDIVTETSFP 226
+ R+SA + F ++ +SGH + P + T +P
Sbjct: 393 SSAYRKSASTHHKSVF-------------SHSKAASGHLKPVSGHSKPASGHPKSATVYP 439
Query: 227 IPGQPCPSFPKSDVYKATCDLATFQGDKM--PPFQKYSSPRIYLPRPPCSYELANPGYTN 284
P S +KA D F+GD + P + P P+P + ++ ++
Sbjct: 440 KPA--------SVHFKA--DSVHFKGDSVHFKPDSVHFKPASSNPKPITGHHVSAGSHSK 489
Query: 285 SSPYPTLYKDSTSIPNDT 302
S+ + +TS P T
Sbjct: 490 SA-----FSAATSHPKPT 502
>gi|41281981 toll-like receptor adaptor molecule 1 [Homo sapiens]
Length = 712
Score = 31.6 bits (70), Expect = 1.8
Identities = 36/131 (27%), Positives = 51/131 (38%), Gaps = 28/131 (21%)
Query: 362 PELPCRYLTTPPPGAPALQTVITTT----------TKVSY-----------QAYQPPAMK 400
PELP ++PPPG P + T+T T +Y Q+ P ++
Sbjct: 265 PELP----SSPPPGLPEVAPDATSTGLPDTPAAPETSTNYPVECTEGSAGPQSLPLPILE 320
Query: 401 YSDSVREVKSLSSCNYAPEDTGMSVYPEPWGPPVTVTRAASPSGPPPMKIAGDCRA-IRP 459
+ VK + + EDT S +P PP T SP PPP + C A + P
Sbjct: 321 PVKNPCSVKDQTPLQLSVEDT-TSPNTKPC-PPTPTTPETSPPPPPPPPSSTPCSAHLTP 378
Query: 460 TVAIPHEPVSS 470
+ P SS
Sbjct: 379 SSLFPSSLESS 389
>gi|122937496 WAS/WASL interacting protein family, member 3 [Homo
sapiens]
Length = 483
Score = 31.6 bits (70), Expect = 1.8
Identities = 26/106 (24%), Positives = 40/106 (37%), Gaps = 16/106 (15%)
Query: 362 PELPCRYLTTPPPGAPALQTVITTTTKVSYQAYQPPAMKYSDSVREVKSLSSCNYAPEDT 421
P +P TPPP P L + +++ + PP ++ V C P
Sbjct: 169 PNVPAPPPPTPPPPPPPLPPPLPSSSPIKTPLVSPPGPLTKGNLPVVAPPVPCAPPP--- 225
Query: 422 GMSVYPEPWGPPVTVTRAASPSGPPPMKIAGDCRAIRPTVAIPHEP 467
P P PP +P PP + D +A++P +A H P
Sbjct: 226 -----PPPPPPP-------TPPPLPPASVLSD-KAVKPQLAPLHLP 258
>gi|50897850 KIAA1914 protein isoform 1 [Homo sapiens]
Length = 818
Score = 31.6 bits (70), Expect = 1.8
Identities = 30/103 (29%), Positives = 47/103 (45%), Gaps = 12/103 (11%)
Query: 404 SVREVKSLSSCNYAPEDTGMSVYPEPWGPPVTVTRAASPSGPPPMKIAGDCRAIRPTVAI 463
++ + ++ S APE+ G+ EP + + + P PPP I R +AI
Sbjct: 61 TINKQQNAESQGKAPEEQGLLPNGEP-SQHSSAPQKSLPDLPPPKMIPE-----RKQLAI 114
Query: 464 PH-EPVSSRTDEAETWDVCLSGLGSAVSYSDRVGPFFTYNNED 505
P E +EAE +D L+ G AVS S + +Y+ ED
Sbjct: 115 PKTESPEGYYEEAEPYDTSLNEDGEAVSSS-----YESYDEED 152
>gi|24308338 KIAA1914 protein isoform 2 [Homo sapiens]
Length = 814
Score = 31.6 bits (70), Expect = 1.8
Identities = 30/103 (29%), Positives = 47/103 (45%), Gaps = 12/103 (11%)
Query: 404 SVREVKSLSSCNYAPEDTGMSVYPEPWGPPVTVTRAASPSGPPPMKIAGDCRAIRPTVAI 463
++ + ++ S APE+ G+ EP + + + P PPP I R +AI
Sbjct: 61 TINKQQNAESQGKAPEEQGLLPNGEP-SQHSSAPQKSLPDLPPPKMIPE-----RKQLAI 114
Query: 464 PH-EPVSSRTDEAETWDVCLSGLGSAVSYSDRVGPFFTYNNED 505
P E +EAE +D L+ G AVS S + +Y+ ED
Sbjct: 115 PKTESPEGYYEEAEPYDTSLNEDGEAVSSS-----YESYDEED 152
>gi|7662010 zinc finger protein 516 [Homo sapiens]
Length = 1163
Score = 31.6 bits (70), Expect = 1.8
Identities = 34/140 (24%), Positives = 43/140 (30%), Gaps = 15/140 (10%)
Query: 348 HGQ--FQAMATRPYYNPELPCRYLTTPPPGAPALQTVITTTTKVSYQAYQPPAMKYSDSV 405
HGQ A P P P PG T T V +A P+
Sbjct: 892 HGQEPHGAATQGPLAKPRQEASSKPVPAPGGGGFSRSATPTPTVIARAGAQPSANS---- 947
Query: 406 REVKSLSSCNYAPEDTGMSVYPEPWGPPVTVTR-AASPSGPPPMKIAGDCRAIRPTVAIP 464
K + P G + + P + +A P GPPP K G + P
Sbjct: 948 ---KPVEKFGVPPAGAGFAPTNKHSAPDSLKAKFSAQPQGPPPAKGEGGAPPLP-----P 999
Query: 465 HEPVSSRTDEAETWDVCLSG 484
EP S E T C +G
Sbjct: 1000 REPPSKAAQELRTLATCAAG 1019
>gi|146134388 YLP motif containing 1 [Homo sapiens]
Length = 2146
Score = 31.6 bits (70), Expect = 1.8
Identities = 33/115 (28%), Positives = 40/115 (34%), Gaps = 31/115 (26%)
Query: 358 PYYNPELPCRYLTTPPPGAPALQTVITTTTKVSYQAYQPPAMKYSDSVREVKSLSSCNYA 417
P P LP T PPPG P + T V PP M SLSS
Sbjct: 545 PVMPPALPA---TVPPPGMPPPVMPPSLPTSVP-----PPGMP--------PSLSSAG-- 586
Query: 418 PEDTGMSVYPEPWGPPVTVTRAASPSGPPPMKIAGDCRAIRPTVAIPHEPVSSRT 472
PPV + S +GPPP+ + P +P P+SS T
Sbjct: 587 -------------PPPVLPPPSLSSAGPPPVLPPPSLSSTAPPPVMPLPPLSSAT 628
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.132 0.420
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,449,529
Number of Sequences: 37866
Number of extensions: 1334179
Number of successful extensions: 4459
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 55
Number of HSP's that attempted gapping in prelim test: 4367
Number of HSP's gapped (non-prelim): 138
length of query: 506
length of database: 18,247,518
effective HSP length: 107
effective length of query: 399
effective length of database: 14,195,856
effective search space: 5664146544
effective search space used: 5664146544
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.