Guide to the Human Genome
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Name: LOC100291075 Sequence: fasta or formatted (246aa) NCBI GI: 239748384
Description:

PREDICTED: hypothetical protein XP_002346651

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.4         28           4
 C cysteine            3.7          9           1
 D aspartate           1.6          4           1
 E glutamate           5.7         14           2
 F phenylalanine       2.0          5           2
 G glycine             5.3         13           2
 H histidine           2.8          7           2
 I isoleucine          3.3          8           2
 K lysine              2.8          7           1
 L leucine             6.5         16           2
 M methionine          2.0          5           1
 N asparagine          3.7          9           1
 P proline            13.4         33           5
 Q glutamine           4.1         10           2
 R arginine            6.5         16           2
 S serine             13.0         32           2
 T threonine           5.7         14           1
 V valine              4.1         10           2
 W tryptophan          1.6          4           1
 Y tyrosine            0.8          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002346651 
LOC100288832          1.000   PREDICTED: hypothetical protein XP_002342488 
LOC100293495          0.041   PREDICTED: hypothetical protein 
TAF4                  0.037   TBP-associated factor 4 
SYN2                  0.035   synapsin II isoform IIa 
ZNF219                0.035   zinc finger protein 219 
ZNF219                0.035   zinc finger protein 219 
ZNF219                0.035   zinc finger protein 219 
FMN1                  0.033   formin 1 
TBKBP1                0.033   TBK1 binding protein 1 
PRR18                 0.033   proline rich region 18 
LOC388906             0.031   PREDICTED: hypothetical protein 
LOC388906             0.031   PREDICTED: hypothetical protein 
LOC388906             0.031   PREDICTED: hypothetical protein 
FHDC1                 0.031   FH2 domain containing 1 
PPP1R3D               0.029   protein phosphatase 1, regulatory subunit 3D 
DCHS1                 0.029   dachsous 1 precursor 
LRRC38                0.029   PREDICTED: leucine rich repeat containing 38 
LRRC38                0.029   PREDICTED: leucine rich repeat containing 38 
MLL2                  0.029   myeloid/lymphoid or mixed-lineage leukemia 2 
LOC100290263          0.029   PREDICTED: hypothetical protein XP_002347916 
NFATC1                0.027   nuclear factor of activated T-cells, cytosolic compo...
ZNF385C               0.027   PREDICTED: zinc finger protein 385C 
ZNF385C               0.027   PREDICTED: zinc finger protein 385C 
ZNF385C               0.027   PREDICTED: zinc finger protein 385C 
SYNJ1                 0.027   synaptojanin 1 isoform d 
TENC1                 0.027   tensin like C1 domain containing phosphatase isoform...
TENC1                 0.027   tensin like C1 domain containing phosphatase isoform...
TENC1                 0.027   tensin like C1 domain containing phosphatase isoform...
SPEG                  0.027   SPEG complex locus 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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