Guide to the Human Genome
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Name: CDKN1B Sequence: fasta or formatted (198aa) NCBI GI: 4757962
Description:

cyclin-dependent kinase inhibitor 1B

Referenced in:

Cyclins and Related Functions
E2F Pathways

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.6         15           2
 C cysteine            2.0          4           1
 D aspartate           6.6         13           2
 E glutamate           9.1         18           2
 F phenylalanine       2.0          4           1
 G glycine             6.1         12           1
 H histidine           2.5          5           1
 I isoleucine          1.0          2           1
 K lysine              6.6         13           2
 L leucine             5.1         10           1
 M methionine          1.5          3           1
 N asparagine          5.1         10           1
 P proline            10.1         20           2
 Q glutamine           5.6         11           1
 R arginine            8.6         17           3
 S serine              9.1         18           2
 T threonine           4.5          9           1
 V valine              4.5          9           1
 W tryptophan          1.0          2           1
 Y tyrosine            1.5          3           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   cyclin-dependent kinase inhibitor 1B 
CDKN1C                0.129   cyclin-dependent kinase inhibitor 1C isoform b [Hom...
CDKN1C                0.129   cyclin-dependent kinase inhibitor 1C isoform b [Hom...
CDKN1C                0.129   cyclin-dependent kinase inhibitor 1C isoform a 
CDKN1A                0.103   cyclin-dependent kinase inhibitor 1A 
CDKN1A                0.103   cyclin-dependent kinase inhibitor 1A 
LENG9                 0.021   leukocyte receptor cluster (LRC) member 9 
LOC100292618          0.021   PREDICTED: hypothetical protein 
LOC100290170          0.021   PREDICTED: hypothetical protein XP_002347382 
LOC100289646          0.021   PREDICTED: hypothetical protein XP_002343220 
CEP164                0.018   centrosomal protein 164kDa 
PTPRN                 0.018   protein tyrosine phosphatase, receptor type, N precur...
ANKRD43               0.018   ankyrin repeat domain 43 
LOC642515             0.018   PREDICTED: similar to NG5 protein 
LOC642515             0.018   PREDICTED: similar to NG5 protein 
LBX1                  0.018   ladybird homeobox 1 
CTR9                  0.018   SH2 domain binding protein 1 
OGFR                  0.015   opioid growth factor receptor 
ARHGEF5               0.015   rho guanine nucleotide exchange factor 5 
LIN54                 0.015   lin-54 homolog isoform a 
TCEB3B                0.015   elongin A2 
MLL                   0.013   myeloid/lymphoid or mixed-lineage leukemia protein [...
SPEN                  0.013   spen homolog, transcriptional regulator 
C17orf28              0.013   hypothetical protein LOC283987 
LOC646862             0.013   PREDICTED: hypothetical protein LOC646862 
LOC646862             0.013   PREDICTED: hypothetical protein LOC646862 
LOC646862             0.013   PREDICTED: hypothetical protein LOC646862 
LIPE                  0.010   hormone-sensitive lipase 
ATG9B                 0.010   ATG9 autophagy related 9 homolog B 
KIAA0232              0.010   hypothetical protein LOC9778 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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